Wall clock time and date at job start Tue Mar 31 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00088 * 2 1 4 4 H 1.48505 * 109.47378 * 89.99471 * 3 2 1 5 5 H 1.48503 * 109.47382 * 329.99533 * 3 2 1 6 6 H 1.48500 * 109.47303 * 209.99770 * 3 2 1 7 7 C 1.37875 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00324 * 5.17373 * 7 2 1 9 9 C 1.50702 * 119.99840 * 185.17229 * 7 2 1 10 10 H 1.09003 * 109.50364 * 305.30822 * 9 7 2 11 11 C 1.53125 * 109.50387 * 65.38005 * 9 7 2 12 12 C 1.53114 * 109.15968 * 177.59658 * 11 9 7 13 13 C 1.53038 * 109.27998 * 302.34482 * 12 11 9 14 14 N 1.46854 * 109.51962 * 59.18258 * 13 12 11 15 15 C 1.46907 * 110.99760 * 174.16278 * 14 13 12 16 16 N 1.46504 * 109.46598 * 278.95211 * 15 14 13 17 17 C 1.44543 * 120.61194 * 269.74019 * 16 15 14 18 18 C 1.53431 * 111.71167 * 179.84590 * 17 16 15 19 19 S 1.82059 * 103.93767 * 0.37355 * 18 17 16 20 20 C 1.32998 * 120.61538 * 90.02707 * 16 15 14 21 21 S 1.71207 * 125.19995 * 0.02562 * 20 16 15 22 22 C 1.46848 * 111.19584 * 298.25451 * 14 13 12 23 23 H 0.96993 * 120.00348 * 174.99443 * 1 2 3 24 24 H 1.08999 * 109.52267 * 297.50300 * 11 9 7 25 25 H 1.09006 * 109.51809 * 57.62794 * 11 9 7 26 26 H 1.08994 * 109.50586 * 62.28946 * 12 11 9 27 27 H 1.09002 * 109.50093 * 182.36770 * 12 11 9 28 28 H 1.09001 * 109.46166 * 179.19663 * 13 12 11 29 29 H 1.09001 * 109.46504 * 299.17918 * 13 12 11 30 30 H 1.08997 * 109.47002 * 38.95257 * 15 14 13 31 31 H 1.08994 * 109.47129 * 158.95205 * 15 14 13 32 32 H 1.08989 * 109.04345 * 300.62410 * 17 16 15 33 33 H 1.09000 * 109.03833 * 59.44029 * 17 16 15 34 34 H 1.09007 * 110.71478 * 241.67259 * 18 17 16 35 35 H 1.08993 * 110.47379 * 118.96287 * 18 17 16 36 36 H 1.08995 * 109.46210 * 301.72735 * 22 14 13 37 37 H 1.08998 * 109.45841 * 181.75920 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4467 2.6527 -0.7001 6 1 3.5468 1.4401 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4678 -2.1275 -0.0834 9 6 3.5069 -1.1968 0.1182 10 1 3.9341 -0.5667 -0.6620 11 6 3.9131 -0.6555 1.4918 12 6 5.4371 -0.7177 1.6258 13 6 5.9032 -2.1619 1.4281 14 7 5.4911 -2.6330 0.0996 15 6 6.0402 -3.9667 -0.1797 16 7 7.4293 -3.8387 -0.6275 17 6 7.7395 -3.6930 -2.0317 18 6 9.2504 -3.5724 -2.2696 19 16 9.9677 -3.6858 -0.6001 20 6 8.4285 -3.8603 0.2500 21 16 8.2507 -4.0323 1.9441 22 6 4.0289 -2.6270 -0.0359 23 1 -0.4850 -0.8368 -0.0733 24 1 3.5807 0.3780 1.5889 25 1 3.4527 -1.2611 2.2725 26 1 5.8953 -0.0807 0.8694 27 1 5.7295 -0.3729 2.6177 28 1 6.9892 -2.2073 1.5088 29 1 5.4553 -2.7961 2.1932 30 1 6.0048 -4.5712 0.7265 31 1 5.4496 -4.4466 -0.9600 32 1 7.3599 -4.5603 -2.5716 33 1 7.2495 -2.7970 -2.4129 34 1 9.4935 -2.6126 -2.7258 35 1 9.6046 -4.3921 -2.8945 36 1 3.5901 -3.2590 0.7362 37 1 3.7537 -3.0102 -1.0185 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853526404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:26 Heat of formation + Delta-G solvation = 31.018433 kcal Electronic energy + Delta-G solvation = -19045.297215 eV Core-core repulsion = 16268.191661 eV Total energy + Delta-G solvation = -2777.105554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.01135 -37.93875 -33.89868 -32.35200 -31.52319 -30.20990 -27.87267 -25.36133 -24.62956 -22.82451 -21.91663 -21.05085 -18.89804 -18.75382 -17.63457 -17.19287 -16.84309 -15.52682 -15.22630 -14.55440 -14.31940 -14.06584 -13.69407 -13.44726 -13.30293 -13.14683 -12.71502 -12.34392 -12.19868 -11.99696 -11.71929 -11.51979 -11.22524 -11.09171 -10.82505 -10.61490 -10.13456 -9.86301 -9.62942 -9.50112 -8.74702 -8.63215 -8.44557 -8.21218 -7.91481 -7.49198 -6.45345 -4.11989 0.41124 0.65639 1.30049 1.87607 2.39166 3.37859 3.43465 3.59012 3.63744 4.06319 4.20992 4.47033 4.67134 4.81361 4.85343 5.02022 5.21928 5.26601 5.53139 5.64909 5.66113 5.90935 6.02380 6.07801 6.17304 6.30989 6.36032 6.51064 6.55682 6.79161 6.84213 7.17211 7.30485 7.35013 7.55396 8.09598 8.33201 8.85150 9.58442 10.94647 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027337 B = 0.004625 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.015698 B = 6053.233334 C = 6279.157117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.029 3.971 3 Si 1.056 2.944 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.592 4.592 8 H 0.054 0.946 9 C 0.024 3.976 10 H 0.034 0.966 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.055 3.945 14 N -0.552 5.552 15 C 0.259 3.741 16 N -0.511 5.511 17 C 0.081 3.919 18 C -0.128 4.128 19 S -0.054 6.054 20 C 0.319 3.681 21 S -0.495 6.495 22 C 0.082 3.918 23 H 0.266 0.734 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.031 0.969 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.451 -7.991 -6.680 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.886 3.114 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.630 4.630 8 H 0.072 0.928 9 C 0.004 3.996 10 H 0.052 0.948 11 C -0.159 4.159 12 C -0.159 4.159 13 C -0.073 4.073 14 N -0.278 5.278 15 C 0.045 3.955 16 N -0.213 5.213 17 C -0.046 4.046 18 C -0.279 4.279 19 S 0.176 5.824 20 C -0.047 4.047 21 S -0.364 6.364 22 C -0.045 4.045 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.049 0.951 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.334 -6.110 -5.682 21.057 hybrid contribution -1.329 -2.124 -0.819 2.636 sum 18.005 -8.234 -6.500 20.838 Atomic orbital electron populations 1.70820 1.06838 1.30569 1.46752 1.25758 0.96258 1.02476 0.93011 0.83823 0.75119 0.75437 0.76986 1.21102 1.21894 1.20359 1.22018 0.90420 0.95043 1.55552 0.92761 1.19155 0.96470 0.91032 0.92934 0.94765 1.22001 0.92592 1.00697 1.00607 1.21698 0.98030 0.95773 1.00353 1.22559 1.01194 0.95939 0.87558 1.61860 1.13378 1.21516 1.31055 1.22490 0.78092 0.93307 1.01581 1.47519 1.08119 1.60131 1.05580 1.21922 0.95117 1.06221 0.81303 1.24522 0.95791 1.08966 0.98649 1.87339 1.08377 1.86550 1.00155 1.27877 0.92196 0.84914 0.99731 1.93096 1.90427 1.63232 0.89621 1.22125 0.81962 1.00653 0.99772 0.92364 0.93172 0.92767 0.92355 0.92561 0.89650 0.94386 0.89223 0.88127 0.88028 0.87084 0.85909 0.86042 0.95114 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.95 13.70 55.43 0.76 -27.19 16 2 C 0.03 0.83 5.43 -17.82 -0.10 0.73 16 3 Si 1.06 25.56 25.30 -169.99 -4.30 21.26 16 4 H -0.28 -6.62 6.79 56.52 0.38 -6.23 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.28 6.36 56.52 0.36 -5.92 16 7 C -0.59 -16.12 8.92 -34.44 -0.31 -16.43 16 8 H 0.05 1.58 7.98 -52.49 -0.42 1.16 16 9 C 0.02 0.54 1.84 -91.69 -0.17 0.37 16 10 H 0.03 0.82 6.65 -51.93 -0.35 0.47 16 11 C -0.12 -2.63 4.89 -26.61 -0.13 -2.76 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 13 C 0.06 0.96 4.49 -3.83 -0.02 0.95 16 14 N -0.55 -9.01 4.75 -238.57 -1.13 -10.14 16 15 C 0.26 3.36 5.44 -63.30 -0.34 3.01 16 16 N -0.51 -5.73 3.00 -179.09 -0.54 -6.26 16 17 C 0.08 0.57 6.80 -4.86 -0.03 0.54 16 18 C -0.13 -0.69 7.42 37.38 0.28 -0.42 16 19 S -0.05 -0.53 23.24 -107.50 -2.50 -3.03 16 20 C 0.32 4.17 6.82 53.27 0.36 4.53 16 21 S -0.50 -8.26 26.41 -107.50 -2.84 -11.10 16 22 C 0.08 1.55 4.62 -3.84 -0.02 1.53 16 23 H 0.27 8.08 8.72 -40.82 -0.36 7.72 16 24 H 0.05 1.14 4.37 -51.93 -0.23 0.91 16 25 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.50 4.66 -41.80 -0.19 1.31 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.28 6.77 -51.93 -0.35 0.93 16 31 H 0.10 1.08 7.64 -51.93 -0.40 0.68 16 32 H 0.10 0.48 8.14 -51.94 -0.42 0.06 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.12 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.17 7.91 -51.93 -0.41 0.76 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -32.25 307.38 -11.91 -44.17 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.36 Total: -1.99 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.64 Total: -10.34 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.91 Total: -43.60 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -4.30 Total: 21.26 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -5.34 Total: -14.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.25 -11.91 -44.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.184 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds