Wall clock time and date at job start Tue Mar 31 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00088 * 2 1 4 4 H 1.48505 * 109.47378 * 89.99471 * 3 2 1 5 5 H 1.48503 * 109.47382 * 329.99533 * 3 2 1 6 6 H 1.48500 * 109.47303 * 209.99770 * 3 2 1 7 7 C 1.37875 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00324 * 5.17373 * 7 2 1 9 9 C 1.50702 * 119.99840 * 185.17229 * 7 2 1 10 10 H 1.09003 * 109.50364 * 305.30822 * 9 7 2 11 11 C 1.53125 * 109.50387 * 65.38005 * 9 7 2 12 12 C 1.53114 * 109.15968 * 177.59658 * 11 9 7 13 13 C 1.53038 * 109.27998 * 302.34482 * 12 11 9 14 14 N 1.46854 * 109.51962 * 59.18258 * 13 12 11 15 15 C 1.46907 * 110.99760 * 174.16278 * 14 13 12 16 16 N 1.46504 * 109.46598 * 278.95211 * 15 14 13 17 17 C 1.44543 * 120.61194 * 269.74019 * 16 15 14 18 18 C 1.53431 * 111.71167 * 179.84590 * 17 16 15 19 19 S 1.82059 * 103.93767 * 0.37355 * 18 17 16 20 20 C 1.32998 * 120.61538 * 90.02707 * 16 15 14 21 21 S 1.71207 * 125.19995 * 0.02562 * 20 16 15 22 22 C 1.46848 * 111.19584 * 298.25451 * 14 13 12 23 23 H 0.96993 * 120.00348 * 174.99443 * 1 2 3 24 24 H 1.08999 * 109.52267 * 297.50300 * 11 9 7 25 25 H 1.09006 * 109.51809 * 57.62794 * 11 9 7 26 26 H 1.08994 * 109.50586 * 62.28946 * 12 11 9 27 27 H 1.09002 * 109.50093 * 182.36770 * 12 11 9 28 28 H 1.09001 * 109.46166 * 179.19663 * 13 12 11 29 29 H 1.09001 * 109.46504 * 299.17918 * 13 12 11 30 30 H 1.08997 * 109.47002 * 38.95257 * 15 14 13 31 31 H 1.08994 * 109.47129 * 158.95205 * 15 14 13 32 32 H 1.08989 * 109.04345 * 300.62410 * 17 16 15 33 33 H 1.09000 * 109.03833 * 59.44029 * 17 16 15 34 34 H 1.09007 * 110.71478 * 241.67259 * 18 17 16 35 35 H 1.08993 * 110.47379 * 118.96287 * 18 17 16 36 36 H 1.08995 * 109.46210 * 301.72735 * 22 14 13 37 37 H 1.08998 * 109.45841 * 181.75920 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4467 2.6527 -0.7001 6 1 3.5468 1.4401 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4678 -2.1275 -0.0834 9 6 3.5069 -1.1968 0.1182 10 1 3.9341 -0.5667 -0.6620 11 6 3.9131 -0.6555 1.4918 12 6 5.4371 -0.7177 1.6258 13 6 5.9032 -2.1619 1.4281 14 7 5.4911 -2.6330 0.0996 15 6 6.0402 -3.9667 -0.1797 16 7 7.4293 -3.8387 -0.6275 17 6 7.7395 -3.6930 -2.0317 18 6 9.2504 -3.5724 -2.2696 19 16 9.9677 -3.6858 -0.6001 20 6 8.4285 -3.8603 0.2500 21 16 8.2507 -4.0323 1.9441 22 6 4.0289 -2.6270 -0.0359 23 1 -0.4850 -0.8368 -0.0733 24 1 3.5807 0.3780 1.5889 25 1 3.4527 -1.2611 2.2725 26 1 5.8953 -0.0807 0.8694 27 1 5.7295 -0.3729 2.6177 28 1 6.9892 -2.2073 1.5088 29 1 5.4553 -2.7961 2.1932 30 1 6.0048 -4.5712 0.7265 31 1 5.4496 -4.4466 -0.9600 32 1 7.3599 -4.5603 -2.5716 33 1 7.2495 -2.7970 -2.4129 34 1 9.4935 -2.6126 -2.7258 35 1 9.6046 -4.3921 -2.8945 36 1 3.5901 -3.2590 0.7362 37 1 3.7537 -3.0102 -1.0185 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853526404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:26 Heat of formation + Delta-G solvation = 8.932424 kcal Electronic energy + Delta-G solvation = -19046.254936 eV Core-core repulsion = 16268.191661 eV Total energy + Delta-G solvation = -2778.063275 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06820 -39.31811 -35.59529 -33.96612 -32.44505 -31.92747 -28.97964 -26.64282 -26.19367 -24.09440 -23.10061 -22.51457 -20.56741 -19.84554 -19.52821 -18.19619 -17.81042 -16.69198 -16.25844 -15.92417 -15.75825 -15.25368 -15.13998 -14.80737 -14.54386 -14.27829 -14.13092 -13.72641 -13.53563 -13.20462 -12.91938 -12.71677 -12.64084 -12.55425 -12.34764 -11.83910 -11.76927 -11.65151 -11.38941 -11.23142 -10.67113 -10.60227 -9.68146 -9.47383 -9.02935 -8.75732 -8.68758 -6.38799 -0.59441 -0.21742 0.60583 0.93176 1.43699 1.44872 1.51444 1.69483 2.46962 2.85043 3.06682 3.09844 3.71762 3.77348 3.96264 4.11698 4.15540 4.24279 4.37458 4.40765 4.49157 4.54365 4.57653 4.67115 4.79837 4.84325 4.94136 5.03092 5.14464 5.16379 5.29250 5.41155 5.67151 5.79306 5.93903 6.04703 6.17338 6.58110 7.40032 8.67468 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027337 B = 0.004625 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.015698 B = 6053.233334 C = 6279.157117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.022 4.022 3 Si 1.090 2.910 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.248 1.248 7 C -0.588 4.588 8 H 0.022 0.978 9 C 0.023 3.977 10 H 0.035 0.965 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.063 3.937 14 N -0.546 5.546 15 C 0.260 3.740 16 N -0.500 5.500 17 C 0.068 3.932 18 C -0.114 4.114 19 S -0.041 6.041 20 C 0.330 3.670 21 S -0.613 6.613 22 C 0.093 3.907 23 H 0.252 0.748 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.015 0.985 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.314 -7.774 -9.609 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.219 4.219 3 Si 0.914 3.086 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.172 1.172 7 C -0.627 4.627 8 H 0.040 0.960 9 C 0.003 3.997 10 H 0.053 0.947 11 C -0.157 4.157 12 C -0.152 4.152 13 C -0.065 4.065 14 N -0.271 5.271 15 C 0.046 3.954 16 N -0.199 5.199 17 C -0.056 4.056 18 C -0.263 4.263 19 S 0.190 5.810 20 C -0.041 4.041 21 S -0.482 6.482 22 C -0.034 4.034 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.176 0.824 36 H 0.034 0.966 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 22.235 -5.924 -8.649 24.582 hybrid contribution -2.180 -2.283 -0.142 3.160 sum 20.055 -8.207 -8.791 23.384 Atomic orbital electron populations 1.70940 1.08165 1.29766 1.49858 1.27085 0.96189 1.06167 0.92470 0.83423 0.75267 0.71887 0.78039 1.19786 1.22062 1.17233 1.22280 0.93086 0.93541 1.53776 0.95987 1.19070 0.93465 0.93624 0.93530 0.94721 1.21896 0.94977 0.99656 0.99209 1.21645 0.95350 0.96678 1.01491 1.22454 1.01319 0.94953 0.87740 1.61797 1.11471 1.23663 1.30212 1.22490 0.79253 0.91386 1.02298 1.47702 1.07086 1.57962 1.07200 1.22377 0.96547 1.08262 0.78462 1.24864 0.93837 1.12020 0.95623 1.87377 1.05810 1.84725 1.03077 1.27804 0.94114 0.83792 0.98394 1.93347 1.92101 1.68796 0.93990 1.21817 0.83720 0.97882 0.99999 0.93892 0.93999 0.94388 0.91592 0.91235 0.89089 0.96150 0.90800 0.85011 0.84500 0.86349 0.83535 0.82394 0.96634 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.61 13.70 21.45 0.29 -59.31 16 2 C -0.02 -1.28 5.43 84.65 0.46 -0.82 16 3 Si 1.09 50.72 25.30 68.60 1.74 52.45 16 4 H -0.27 -12.04 6.79 99.48 0.68 -11.37 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.25 -10.28 6.36 99.48 0.63 -9.65 16 7 C -0.59 -32.51 8.92 25.60 0.23 -32.28 16 8 H 0.02 1.32 7.98 -2.91 -0.02 1.29 16 9 C 0.02 1.01 1.84 -11.49 -0.02 0.99 16 10 H 0.03 1.57 6.65 -2.39 -0.02 1.56 16 11 C -0.12 -5.10 4.89 30.67 0.15 -4.95 16 12 C -0.11 -4.05 6.09 30.64 0.19 -3.86 16 13 C 0.06 2.17 4.49 86.32 0.39 2.56 16 14 N -0.55 -16.74 4.75 -908.70 -4.32 -21.06 16 15 C 0.26 6.13 5.44 170.80 0.93 7.06 16 16 N -0.50 -9.54 3.00 -720.53 -2.16 -11.70 16 17 C 0.07 0.58 6.80 86.89 0.59 1.17 16 18 C -0.11 -0.53 7.42 72.13 0.54 0.00 16 19 S -0.04 -0.66 23.24 -56.49 -1.31 -1.98 16 20 C 0.33 7.99 6.82 130.07 0.89 8.87 16 21 S -0.61 -21.02 26.41 -56.49 -1.49 -22.51 16 22 C 0.09 3.45 4.62 86.32 0.40 3.84 16 23 H 0.25 15.96 8.72 -92.71 -0.81 15.15 16 24 H 0.04 1.84 4.37 -2.39 -0.01 1.83 16 25 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 3.15 4.66 -8.83 -0.04 3.11 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 2.07 6.77 -2.39 -0.02 2.06 16 31 H 0.13 2.32 7.64 -2.39 -0.02 2.30 16 32 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.15 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.16 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 2.66 7.91 -2.39 -0.02 2.64 16 Total: -1.00 -75.10 307.38 -1.64 -76.73 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 0.89 Total: 4.78 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 4.73 Total: -17.41 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -6.19 Total: -92.07 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 1.74 Total: 52.45 kcal Atomic # 16 Polarization: -21.68 SS G_CDS: -2.80 Total: -24.49 kcal Total: -75.10 -1.64 -76.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.663 kcal (2) G-P(sol) polarization free energy of solvation -75.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds