Wall clock time and date at job start Tue Mar 31 2020 06:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99759 * 2 1 4 4 H 1.48498 * 109.47036 * 239.99723 * 3 2 1 5 5 H 1.48500 * 109.47423 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47020 * 120.00332 * 3 2 1 7 7 C 1.37874 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00098 * 173.70487 * 7 2 1 9 9 C 1.50704 * 120.00110 * 353.70319 * 7 2 1 10 10 C 1.52997 * 115.54984 * 86.11386 * 9 7 2 11 11 O 1.42904 * 109.47253 * 65.11077 * 10 9 7 12 12 C 1.35743 * 117.00430 * 180.02562 * 11 10 9 13 13 C 1.39374 * 119.72318 * 359.97438 * 12 11 10 14 14 C 1.36464 * 120.42508 * 180.27679 * 13 12 11 15 15 C 1.39970 * 119.79576 * 359.49690 * 14 13 12 16 16 C 1.46430 * 120.98421 * 180.27421 * 15 14 13 17 17 C 1.35844 * 118.19484 * 180.20862 * 16 15 14 18 18 C 1.41004 * 119.82320 * 359.97438 * 17 16 15 19 19 O 1.21795 * 119.15604 * 180.02562 * 18 17 16 20 20 O 1.34222 * 121.68935 * 0.02562 * 18 17 16 21 21 C 1.35035 * 121.46510 * 359.97438 * 20 18 17 22 22 C 1.38507 * 119.73213 * 180.02562 * 12 11 10 23 23 C 1.52994 * 117.49964 * 231.78434 * 9 7 2 24 24 C 1.52998 * 117.49700 * 300.44743 * 9 7 2 25 25 H 0.96995 * 120.00139 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46961 * 305.11435 * 10 9 7 27 27 H 1.08997 * 109.47412 * 185.11024 * 10 9 7 28 28 H 1.08004 * 119.78709 * 0.02562 * 13 12 11 29 29 H 1.08002 * 120.10299 * 179.74405 * 14 13 12 30 30 H 1.08005 * 120.90034 * 0.18180 * 16 15 14 31 31 H 1.07997 * 120.09032 * 179.97438 * 17 16 15 32 32 H 1.08011 * 120.10544 * 359.95609 * 22 12 11 33 33 H 1.08998 * 117.50134 * 215.00503 * 23 9 7 34 34 H 1.08999 * 117.49752 * 0.02562 * 23 9 7 35 35 H 1.09002 * 117.50279 * 359.97379 * 24 9 7 36 36 H 1.08999 * 117.49818 * 144.97802 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1031 9 6 1.2579 -2.4953 0.1420 10 6 0.7193 -3.0931 -1.1593 11 8 1.8126 -3.4584 -2.0040 12 6 1.5054 -4.0074 -3.2069 13 6 0.1702 -4.1895 -3.5626 14 6 -0.1548 -4.7451 -4.7659 15 6 0.8590 -5.1250 -5.6530 16 6 0.5398 -5.7181 -6.9532 17 6 1.5682 -6.0699 -7.7681 18 6 2.8981 -5.8587 -7.3499 19 8 3.8108 -6.1782 -8.0904 20 8 3.1840 -5.3145 -6.1568 21 6 2.2090 -4.9428 -5.2997 22 6 2.5214 -4.3829 -4.0701 23 6 1.7340 -3.4683 1.2225 24 6 0.4252 -2.6967 1.4097 25 1 -0.4850 0.8400 -0.0004 26 1 0.0979 -2.3560 -1.6679 27 1 0.1233 -3.9773 -0.9337 28 1 -0.6122 -3.8926 -2.8799 29 1 -1.1911 -4.8876 -5.0345 30 1 -0.4855 -5.8720 -7.2559 31 1 1.3677 -6.5102 -8.7337 32 1 3.5538 -4.2386 -3.7871 33 1 1.6636 -4.5343 1.0062 34 1 2.5870 -3.1671 1.8305 35 1 0.4178 -1.8883 2.1408 36 1 -0.5064 -3.2549 1.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853638101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:21 Heat of formation + Delta-G solvation = -40.676538 kcal Electronic energy + Delta-G solvation = -21442.522589 eV Core-core repulsion = 18051.818535 eV Total energy + Delta-G solvation = -3390.704054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84722 -39.74281 -38.07241 -36.91149 -36.00028 -34.14016 -32.06483 -30.98826 -29.25389 -26.98127 -25.47135 -24.33971 -23.86419 -22.85845 -21.27634 -19.74369 -19.17064 -18.16690 -17.52278 -16.74640 -16.59283 -16.35095 -15.37627 -15.25174 -15.15854 -14.60230 -14.19016 -14.07809 -13.78159 -13.66844 -13.30746 -12.94456 -12.50061 -12.12193 -11.99409 -11.76491 -11.29846 -11.14660 -11.01771 -10.81762 -10.58774 -10.36923 -10.34850 -9.93982 -9.73159 -9.01105 -8.81047 -8.56781 -8.35953 -7.91723 -6.18478 -4.23374 0.23368 1.05069 1.58023 2.30501 2.82807 3.25157 3.29646 3.33491 3.63740 3.71136 4.13575 4.30962 4.31748 4.36106 4.79150 4.91700 5.10806 5.13849 5.20468 5.33243 5.56400 5.63423 5.68486 5.75221 5.99679 6.01422 6.06470 6.15898 6.21595 6.32074 6.40938 6.55080 6.62642 6.89319 7.15901 7.19017 7.30914 7.45392 7.76623 7.77656 8.26600 8.79051 9.43603 10.90823 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.003763 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.281516 B = 7438.570188 C = 7803.517606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.099 3.901 11 O -0.280 6.280 12 C 0.213 3.787 13 C -0.230 4.230 14 C -0.011 4.011 15 C -0.222 4.222 16 C 0.025 3.975 17 C -0.278 4.278 18 C 0.511 3.489 19 O -0.477 6.477 20 O -0.270 6.270 21 C 0.189 3.811 22 C -0.191 4.191 23 C -0.205 4.205 24 C -0.143 4.143 25 H 0.262 0.738 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 -9.794 -8.704 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.529 4.529 8 H 0.081 0.919 9 C 0.037 3.963 10 C 0.025 3.975 11 O -0.190 6.190 12 C 0.163 3.837 13 C -0.248 4.248 14 C -0.029 4.029 15 C -0.223 4.223 16 C 0.006 3.994 17 C -0.297 4.297 18 C 0.361 3.639 19 O -0.367 6.367 20 O -0.182 6.182 21 C 0.144 3.856 22 C -0.210 4.210 23 C -0.242 4.242 24 C -0.181 4.181 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.813 -9.729 -8.886 13.717 hybrid contribution -0.082 0.937 -0.079 0.944 sum -3.895 -8.792 -8.965 13.147 Atomic orbital electron populations 1.69965 1.05904 1.26941 1.49187 1.24983 0.94871 0.99098 0.94273 0.86645 0.79707 0.82744 0.78926 1.20045 1.21226 1.20059 1.20364 0.93189 0.88295 1.51049 0.91861 1.18709 0.99146 0.94297 0.84127 1.22871 0.86470 0.96601 0.91523 1.86230 1.37605 1.71737 1.23462 1.19055 0.91790 0.86930 0.85896 1.21236 0.96078 1.07661 0.99863 1.20626 0.98305 0.92421 0.91532 1.18918 0.92440 1.12976 0.97955 1.22772 1.00078 0.86725 0.89834 1.22388 0.91538 1.11596 1.04202 1.19212 0.90704 0.75759 0.78211 1.90959 1.50249 1.48081 1.47378 1.83535 1.39386 1.67396 1.27860 1.18552 0.84879 0.93618 0.88532 1.19496 1.00817 1.08849 0.91854 1.23028 0.98631 0.95727 1.06813 1.22545 0.92253 1.01219 1.02037 0.92804 0.90668 0.94418 0.83898 0.84367 0.83348 0.82412 0.83174 0.91436 0.89979 0.89352 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.31 12.88 55.43 0.71 -22.59 16 2 C 0.07 1.84 5.38 -17.82 -0.10 1.74 16 3 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.49 -12.73 8.77 -34.44 -0.30 -13.04 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.04 0.86 1.62 -155.66 -0.25 0.61 16 10 C 0.10 2.00 4.55 37.16 0.17 2.17 16 11 O -0.28 -5.50 10.05 -18.94 -0.19 -5.69 16 12 C 0.21 3.48 6.69 -39.06 -0.26 3.22 16 13 C -0.23 -3.12 8.96 -39.80 -0.36 -3.48 16 14 C -0.01 -0.12 9.78 -39.57 -0.39 -0.50 16 15 C -0.22 -2.63 5.87 -105.01 -0.62 -3.25 16 16 C 0.02 0.22 10.12 -37.14 -0.38 -0.15 16 17 C -0.28 -2.95 9.93 -39.39 -0.39 -3.34 16 18 C 0.51 7.50 7.89 31.78 0.25 7.76 16 19 O -0.48 -8.36 17.91 -19.60 -0.35 -8.71 16 20 O -0.27 -4.18 9.82 -20.83 -0.20 -4.39 16 21 C 0.19 2.72 6.76 -38.48 -0.26 2.46 16 22 C -0.19 -2.94 9.93 -39.32 -0.39 -3.33 16 23 C -0.20 -4.16 9.96 -26.69 -0.27 -4.42 16 24 C -0.14 -3.05 9.37 -26.69 -0.25 -3.30 16 25 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 26 H 0.08 1.61 7.64 -51.93 -0.40 1.21 16 27 H 0.04 0.66 7.59 -51.93 -0.39 0.27 16 28 H 0.14 1.85 6.24 -52.48 -0.33 1.53 16 29 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 31 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.15 2.26 8.06 -52.48 -0.42 1.83 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 319.51 15.07 4.81 4.81 Total: -1.00 -29.13 319.51 -8.07 -37.20 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.05 Total: 0.89 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -3.79 Total: -16.87 kcal Atomic # 7 Polarization: -23.31 SS G_CDS: 0.71 Total: -22.59 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.75 Total: -18.79 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.13 -8.07 -37.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853638101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.480 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds