Wall clock time and date at job start Tue Mar 31 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99759 * 2 1 4 4 H 1.48498 * 109.47036 * 239.99723 * 3 2 1 5 5 H 1.48500 * 109.47423 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47020 * 120.00332 * 3 2 1 7 7 C 1.37874 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00098 * 173.70487 * 7 2 1 9 9 C 1.50704 * 120.00110 * 353.70319 * 7 2 1 10 10 C 1.52997 * 115.54984 * 86.11386 * 9 7 2 11 11 O 1.42904 * 109.47253 * 65.11077 * 10 9 7 12 12 C 1.35743 * 117.00430 * 180.02562 * 11 10 9 13 13 C 1.39374 * 119.72318 * 359.97438 * 12 11 10 14 14 C 1.36464 * 120.42508 * 180.27679 * 13 12 11 15 15 C 1.39970 * 119.79576 * 359.49690 * 14 13 12 16 16 C 1.46430 * 120.98421 * 180.27421 * 15 14 13 17 17 C 1.35844 * 118.19484 * 180.20862 * 16 15 14 18 18 C 1.41004 * 119.82320 * 359.97438 * 17 16 15 19 19 O 1.21795 * 119.15604 * 180.02562 * 18 17 16 20 20 O 1.34222 * 121.68935 * 0.02562 * 18 17 16 21 21 C 1.35035 * 121.46510 * 359.97438 * 20 18 17 22 22 C 1.38507 * 119.73213 * 180.02562 * 12 11 10 23 23 C 1.52994 * 117.49964 * 231.78434 * 9 7 2 24 24 C 1.52998 * 117.49700 * 300.44743 * 9 7 2 25 25 H 0.96995 * 120.00139 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46961 * 305.11435 * 10 9 7 27 27 H 1.08997 * 109.47412 * 185.11024 * 10 9 7 28 28 H 1.08004 * 119.78709 * 0.02562 * 13 12 11 29 29 H 1.08002 * 120.10299 * 179.74405 * 14 13 12 30 30 H 1.08005 * 120.90034 * 0.18180 * 16 15 14 31 31 H 1.07997 * 120.09032 * 179.97438 * 17 16 15 32 32 H 1.08011 * 120.10544 * 359.95609 * 22 12 11 33 33 H 1.08998 * 117.50134 * 215.00503 * 23 9 7 34 34 H 1.08999 * 117.49752 * 0.02562 * 23 9 7 35 35 H 1.09002 * 117.50279 * 359.97379 * 24 9 7 36 36 H 1.08999 * 117.49818 * 144.97802 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1031 9 6 1.2579 -2.4953 0.1420 10 6 0.7193 -3.0931 -1.1593 11 8 1.8126 -3.4584 -2.0040 12 6 1.5054 -4.0074 -3.2069 13 6 0.1702 -4.1895 -3.5626 14 6 -0.1548 -4.7451 -4.7659 15 6 0.8590 -5.1250 -5.6530 16 6 0.5398 -5.7181 -6.9532 17 6 1.5682 -6.0699 -7.7681 18 6 2.8981 -5.8587 -7.3499 19 8 3.8108 -6.1782 -8.0904 20 8 3.1840 -5.3145 -6.1568 21 6 2.2090 -4.9428 -5.2997 22 6 2.5214 -4.3829 -4.0701 23 6 1.7340 -3.4683 1.2225 24 6 0.4252 -2.6967 1.4097 25 1 -0.4850 0.8400 -0.0004 26 1 0.0979 -2.3560 -1.6679 27 1 0.1233 -3.9773 -0.9337 28 1 -0.6122 -3.8926 -2.8799 29 1 -1.1911 -4.8876 -5.0345 30 1 -0.4855 -5.8720 -7.2559 31 1 1.3677 -6.5102 -8.7337 32 1 3.5538 -4.2386 -3.7871 33 1 1.6636 -4.5343 1.0062 34 1 2.5870 -3.1671 1.8305 35 1 0.4178 -1.8883 2.1408 36 1 -0.5064 -3.2549 1.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853638101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:20 Heat of formation + Delta-G solvation = -55.405711 kcal Electronic energy + Delta-G solvation = -21443.161294 eV Core-core repulsion = 18051.818535 eV Total energy + Delta-G solvation = -3391.342759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.93509 -40.99148 -39.33029 -38.28725 -37.37274 -35.11554 -34.01452 -32.05277 -30.35323 -28.48008 -27.32834 -25.33278 -25.00508 -23.90097 -22.92926 -21.29231 -20.51918 -19.16316 -18.73945 -18.03222 -17.89216 -17.77900 -16.87200 -16.56245 -16.36244 -16.28877 -15.52882 -15.01193 -14.93387 -14.74563 -14.64746 -14.37879 -13.84590 -13.51123 -13.26037 -13.02667 -12.88849 -12.85082 -12.49390 -12.28344 -12.22855 -12.03277 -11.50189 -11.37835 -11.04741 -10.74897 -10.47495 -10.08482 -9.91080 -9.03548 -8.15401 -6.24239 -0.69842 -0.02689 0.56683 1.19593 1.40871 1.42275 1.48908 1.80787 2.32958 2.42433 2.68353 3.14216 3.17132 3.46005 3.50324 3.53467 3.80536 3.95907 4.12002 4.24829 4.40542 4.44124 4.50338 4.63726 4.66304 4.70809 4.78389 4.85547 4.99475 5.10617 5.16080 5.21304 5.23715 5.42187 5.53788 5.62290 5.74818 6.08704 6.33984 6.38468 6.49185 6.78766 7.43942 8.92707 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.003763 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.281516 B = 7438.570188 C = 7803.517606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.034 3.966 3 Si 0.941 3.059 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.043 0.957 9 C 0.004 3.996 10 C 0.115 3.885 11 O -0.311 6.311 12 C 0.185 3.815 13 C -0.234 4.234 14 C 0.013 3.987 15 C -0.216 4.216 16 C 0.056 3.944 17 C -0.283 4.283 18 C 0.499 3.501 19 O -0.522 6.522 20 O -0.294 6.294 21 C 0.170 3.830 22 C -0.207 4.207 23 C -0.188 4.188 24 C -0.139 4.139 25 H 0.263 0.737 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.151 0.849 29 H 0.193 0.807 30 H 0.208 0.792 31 H 0.186 0.814 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 -11.044 -10.127 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.003 3.997 10 C 0.041 3.959 11 O -0.223 6.223 12 C 0.137 3.863 13 C -0.253 4.253 14 C -0.005 4.005 15 C -0.217 4.217 16 C 0.038 3.962 17 C -0.302 4.302 18 C 0.353 3.647 19 O -0.415 6.415 20 O -0.206 6.206 21 C 0.126 3.874 22 C -0.226 4.226 23 C -0.225 4.225 24 C -0.176 4.176 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.168 0.832 29 H 0.210 0.790 30 H 0.225 0.775 31 H 0.204 0.796 32 H 0.153 0.847 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.682 -10.982 -10.302 16.473 hybrid contribution 0.848 1.276 0.309 1.563 sum -5.834 -9.706 -9.992 15.102 Atomic orbital electron populations 1.70025 1.06525 1.27343 1.49893 1.25513 0.95616 1.01345 0.94263 0.85885 0.78755 0.80071 0.78565 1.20470 1.20489 1.19889 1.20577 0.92648 0.90426 1.51135 0.93845 1.18864 1.00474 0.94232 0.86088 1.22488 0.86268 0.96993 0.90151 1.86147 1.37829 1.73222 1.25110 1.19247 0.93413 0.88508 0.85157 1.21417 0.94648 1.07908 1.01316 1.21149 1.00432 0.89426 0.89479 1.19351 0.91132 1.11692 0.99496 1.23268 1.02266 0.83543 0.87145 1.22539 0.89354 1.12477 1.05797 1.20005 0.92235 0.75013 0.77449 1.90927 1.51820 1.50299 1.48442 1.83454 1.40871 1.67627 1.28642 1.18723 0.86167 0.94411 0.88105 1.19481 1.00355 1.09951 0.92860 1.23024 0.97843 0.96691 1.04988 1.22470 0.93606 1.00945 1.00603 0.92835 0.92710 0.91647 0.83174 0.79029 0.77482 0.79633 0.84654 0.88857 0.90677 0.91642 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.92 12.88 21.45 0.28 -47.65 16 2 C 0.03 1.78 5.38 84.65 0.46 2.23 16 3 Si 0.94 42.43 29.54 68.60 2.03 44.46 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.51 -27.19 8.77 25.60 0.22 -26.96 16 8 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 9 C 0.00 0.18 1.62 -52.93 -0.09 0.09 16 10 C 0.12 4.62 4.55 71.98 0.33 4.95 16 11 O -0.31 -12.54 10.05 -90.68 -0.91 -13.45 16 12 C 0.19 6.06 6.69 22.61 0.15 6.21 16 13 C -0.23 -5.82 8.96 22.13 0.20 -5.62 16 14 C 0.01 0.21 9.78 22.28 0.22 0.43 16 15 C -0.22 -4.31 5.87 -20.12 -0.12 -4.43 16 16 C 0.06 0.69 10.12 23.85 0.24 0.93 16 17 C -0.28 -5.02 9.93 22.39 0.22 -4.80 16 18 C 0.50 14.45 7.89 68.50 0.54 15.00 16 19 O -0.52 -18.68 17.91 18.96 0.34 -18.34 16 20 O -0.29 -9.30 9.82 14.57 0.14 -9.16 16 21 C 0.17 4.83 6.76 22.98 0.16 4.98 16 22 C -0.21 -6.64 9.93 22.44 0.22 -6.41 16 23 C -0.19 -7.55 9.96 30.62 0.30 -7.25 16 24 C -0.14 -5.85 9.37 30.62 0.29 -5.57 16 25 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 26 H 0.05 2.36 7.64 -2.38 -0.02 2.34 16 27 H 0.07 2.19 7.59 -2.39 -0.02 2.17 16 28 H 0.15 3.51 6.24 -2.91 -0.02 3.49 16 29 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 30 H 0.21 0.26 8.06 -2.91 -0.02 0.24 16 31 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.14 4.51 8.06 -2.90 -0.02 4.49 16 33 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -67.80 319.51 6.32 -61.48 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.10 Total: 8.89 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 3.35 Total: -26.22 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.28 Total: -47.65 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.43 Total: -40.95 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -67.80 6.32 -61.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853638101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.076 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds