Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47420 * 281.01434 * 3 2 1 5 5 C 1.36934 * 119.99943 * 264.22329 * 4 3 2 6 6 H 1.08006 * 119.99309 * 199.26248 * 5 4 3 7 7 C 1.38811 * 120.00451 * 19.26950 * 5 4 3 8 8 N 1.31621 * 119.99634 * 11.61203 * 7 5 4 9 9 Si 1.86796 * 120.00163 * 191.61726 * 7 5 4 10 10 H 1.48499 * 109.47294 * 84.97346 * 9 7 5 11 11 H 1.48495 * 109.47071 * 204.97600 * 9 7 5 12 12 H 1.48503 * 109.47071 * 324.97909 * 9 7 5 13 13 C 1.46497 * 119.99424 * 84.22393 * 4 3 2 14 14 C 1.50706 * 109.47032 * 269.99966 * 13 4 3 15 15 N 1.27931 * 124.23944 * 90.02624 * 14 13 4 16 16 C 1.34661 * 117.84762 * 180.02562 * 15 14 13 17 17 C 1.40971 * 129.68890 * 179.71907 * 16 15 14 18 18 C 1.36180 * 120.42201 * 179.85853 * 17 16 15 19 19 C 1.50701 * 119.60682 * 180.22227 * 18 17 16 20 20 C 1.38789 * 120.78003 * 0.44693 * 18 17 16 21 21 C 1.37656 * 120.06550 * 359.77382 * 20 18 17 22 22 C 1.39327 * 119.95420 * 359.97438 * 21 20 18 23 23 S 1.70646 * 124.23862 * 270.02849 * 14 13 4 24 24 H 4.40641 * 5.51427 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.46540 * 161.01604 * 3 2 1 26 26 H 1.09000 * 109.47346 * 41.01937 * 3 2 1 27 27 H 0.97002 * 119.99311 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47233 * 150.00503 * 13 4 3 29 29 H 1.08993 * 109.47746 * 29.99591 * 13 4 3 30 30 H 1.07993 * 119.78787 * 0.27329 * 17 16 15 31 31 H 1.09002 * 109.47122 * 270.22071 * 19 18 17 32 32 H 1.09001 * 109.47171 * 30.22749 * 19 18 17 33 33 H 1.09008 * 109.46913 * 150.22198 * 19 18 17 34 34 H 1.07995 * 119.96607 * 179.75309 * 20 18 17 35 35 H 1.07999 * 120.02215 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2630 1.3558 5 6 3.4749 0.7796 2.1757 6 1 4.1118 0.6082 3.0310 7 6 3.0012 2.0566 1.9079 8 7 2.0512 2.2320 1.0139 9 14 3.7119 3.5260 2.8161 10 1 4.9403 3.9898 2.1226 11 1 2.7124 4.6239 2.8399 12 1 4.0481 3.1323 4.2080 13 6 3.2589 -1.6421 1.8341 14 6 1.9688 -2.0652 2.4881 15 7 0.9974 -2.6227 1.8698 16 6 -0.0981 -2.9476 2.5823 17 6 -1.2979 -3.5563 2.1614 18 6 -2.2957 -3.8041 3.0545 19 6 -3.5687 -4.4602 2.5855 20 6 -2.1559 -3.4552 4.3905 21 6 -0.9970 -2.8554 4.8290 22 6 0.0366 -2.5989 3.9306 23 16 1.6206 -1.8608 4.1461 24 1 -1.0499 0.0002 0.0002 25 1 3.0088 0.9727 -0.3343 26 1 3.0097 -0.7745 -0.6745 27 1 1.7205 3.1244 0.8265 28 1 4.0708 -1.7035 2.5589 29 1 3.4726 -2.3008 0.9925 30 1 -1.4240 -3.8340 1.1255 31 1 -4.2786 -3.6943 2.2733 32 1 -3.3500 -5.1177 1.7441 33 1 -3.9983 -5.0435 3.4001 34 1 -2.9571 -3.6541 5.0867 35 1 -0.8888 -2.5846 5.8689 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859292583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = 136.426340 kcal Electronic energy + Delta-G solvation = -19676.801856 eV Core-core repulsion = 16768.823181 eV Total energy + Delta-G solvation = -2907.978675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86135 -37.19588 -35.85487 -32.32143 -31.63021 -31.44026 -29.76306 -27.38753 -26.50349 -26.01345 -23.27332 -22.25640 -21.42810 -19.66378 -17.73131 -17.52022 -16.51613 -15.99583 -15.51154 -15.09572 -14.44092 -14.25581 -13.76191 -13.72825 -13.50833 -13.30871 -13.05665 -12.49565 -12.08352 -11.97922 -11.68770 -11.56954 -11.39587 -10.98092 -10.94769 -10.80117 -10.41243 -10.36471 -10.14230 -9.51288 -9.11808 -8.86815 -8.83985 -8.37818 -8.03818 -7.57798 -7.22005 -5.94829 -3.40683 0.96498 1.46590 1.92614 2.47487 2.89533 3.29084 3.35015 3.36448 4.05388 4.22505 4.40277 4.51022 4.57519 4.91863 5.05780 5.23306 5.31526 5.38466 5.55601 5.61246 5.62965 5.73716 5.85358 5.94503 5.99833 6.10598 6.23555 6.31949 6.40925 6.69219 6.71336 6.74127 7.07248 7.25177 7.47558 7.57081 8.09539 8.38232 8.92712 9.29942 9.53102 9.98581 11.05154 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.005503 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.665109 B = 5087.150068 C = 5414.965628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.089 4.089 3 C 0.268 3.732 4 N -0.561 5.561 5 C -0.266 4.266 6 H 0.081 0.919 7 C 0.009 3.991 8 N -0.882 5.882 9 Si 0.912 3.088 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.277 1.277 13 C 0.202 3.798 14 C 0.111 3.889 15 N -0.479 5.479 16 C 0.108 3.892 17 C -0.076 4.076 18 C -0.082 4.082 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.064 4.064 22 C -0.205 4.205 23 S 0.080 5.920 24 H 0.183 0.817 25 H 0.109 0.891 26 H 0.038 0.962 27 H 0.259 0.741 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -10.516 3.954 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.092 4.092 3 C 0.143 3.857 4 N -0.279 5.279 5 C -0.396 4.396 6 H 0.099 0.901 7 C -0.192 4.192 8 N -0.524 5.524 9 Si 0.741 3.259 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.071 3.929 14 C -0.176 4.176 15 N -0.194 5.194 16 C -0.015 4.015 17 C -0.097 4.097 18 C -0.085 4.085 19 C -0.165 4.165 20 C -0.148 4.148 21 C -0.086 4.086 22 C -0.324 4.324 23 S 0.337 5.663 24 H 0.200 0.800 25 H 0.126 0.874 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.944 -9.950 4.111 11.466 hybrid contribution -1.216 0.775 0.339 1.481 sum -5.160 -9.175 4.451 11.429 Atomic orbital electron populations 1.23976 0.95155 1.07933 1.04442 1.23911 0.94974 0.93925 0.96352 1.18042 0.83072 1.00299 0.84265 1.44635 1.72198 0.99917 1.11123 1.19384 1.24135 0.86234 1.09829 0.90112 1.25142 0.96432 0.98766 0.98884 1.70068 1.26190 1.21761 1.34337 0.86151 0.78228 0.81953 0.79520 1.20942 1.21579 1.20233 1.20143 0.88073 0.87613 0.97091 1.29080 1.02228 0.93862 0.92435 1.66223 0.99970 1.16839 1.36355 1.19263 0.94123 0.99772 0.88301 1.20112 0.90556 0.99469 0.99591 1.19295 0.96000 0.99750 0.93463 1.20754 0.94385 0.99963 1.01436 1.20787 0.97243 1.01428 0.95330 1.20227 0.91746 0.98527 0.98112 1.23942 1.01074 1.08478 0.98929 1.83900 1.08630 1.60521 1.13243 0.79953 0.87375 0.94432 0.93016 0.90546 0.90409 0.85646 0.91267 0.91605 0.91651 0.85721 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.25 19.25 29.55 0.57 -6.68 16 2 C -0.09 -2.23 11.16 -37.12 -0.41 -2.65 16 3 C 0.27 6.32 5.45 -6.83 -0.04 6.28 16 4 N -0.56 -13.19 2.49 -177.95 -0.44 -13.63 16 5 C -0.27 -6.70 9.71 -15.06 -0.15 -6.85 16 6 H 0.08 1.96 7.84 -52.48 -0.41 1.55 16 7 C 0.01 0.23 5.10 -17.43 -0.09 0.14 16 8 N -0.88 -24.25 9.00 55.49 0.50 -23.75 16 9 Si 0.91 20.75 29.57 -169.99 -5.03 15.72 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.20 4.05 6.25 -5.19 -0.03 4.02 16 14 C 0.11 2.32 6.55 -13.90 -0.09 2.23 16 15 N -0.48 -10.34 10.44 -9.08 -0.09 -10.43 16 16 C 0.11 2.16 7.00 -84.96 -0.59 1.56 16 17 C -0.08 -1.29 9.66 -39.29 -0.38 -1.67 16 18 C -0.08 -1.15 5.83 -105.16 -0.61 -1.76 16 19 C -0.11 -1.10 9.98 36.01 0.36 -0.74 16 20 C -0.13 -1.73 9.68 -39.59 -0.38 -2.11 16 21 C -0.06 -1.00 10.07 -39.39 -0.40 -1.39 16 22 C -0.20 -3.88 6.56 -38.55 -0.25 -4.13 16 23 S 0.08 1.55 23.11 -107.50 -2.48 -0.94 16 24 H 0.18 3.99 7.80 -54.10 -0.42 3.57 16 25 H 0.11 2.74 6.25 -51.93 -0.32 2.41 16 26 H 0.04 0.79 7.98 -51.93 -0.41 0.37 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 29 H 0.08 1.42 7.95 -51.93 -0.41 1.01 16 30 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.06 0.55 8.08 -51.92 -0.42 0.13 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -30.04 320.80 -9.28 -39.32 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.07 Total: 2.63 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -2.50 Total: -13.76 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.04 Total: -47.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.48 Total: -0.94 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.04 -9.28 -39.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859292583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.749 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds