Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47420 * 281.01434 * 3 2 1 5 5 C 1.36934 * 119.99943 * 264.22329 * 4 3 2 6 6 H 1.08006 * 119.99309 * 199.26248 * 5 4 3 7 7 C 1.38811 * 120.00451 * 19.26950 * 5 4 3 8 8 N 1.31621 * 119.99634 * 11.61203 * 7 5 4 9 9 Si 1.86796 * 120.00163 * 191.61726 * 7 5 4 10 10 H 1.48499 * 109.47294 * 84.97346 * 9 7 5 11 11 H 1.48495 * 109.47071 * 204.97600 * 9 7 5 12 12 H 1.48503 * 109.47071 * 324.97909 * 9 7 5 13 13 C 1.46497 * 119.99424 * 84.22393 * 4 3 2 14 14 C 1.50706 * 109.47032 * 269.99966 * 13 4 3 15 15 N 1.27931 * 124.23944 * 90.02624 * 14 13 4 16 16 C 1.34661 * 117.84762 * 180.02562 * 15 14 13 17 17 C 1.40971 * 129.68890 * 179.71907 * 16 15 14 18 18 C 1.36180 * 120.42201 * 179.85853 * 17 16 15 19 19 C 1.50701 * 119.60682 * 180.22227 * 18 17 16 20 20 C 1.38789 * 120.78003 * 0.44693 * 18 17 16 21 21 C 1.37656 * 120.06550 * 359.77382 * 20 18 17 22 22 C 1.39327 * 119.95420 * 359.97438 * 21 20 18 23 23 S 1.70646 * 124.23862 * 270.02849 * 14 13 4 24 24 H 4.40641 * 5.51427 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.46540 * 161.01604 * 3 2 1 26 26 H 1.09000 * 109.47346 * 41.01937 * 3 2 1 27 27 H 0.97002 * 119.99311 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47233 * 150.00503 * 13 4 3 29 29 H 1.08993 * 109.47746 * 29.99591 * 13 4 3 30 30 H 1.07993 * 119.78787 * 0.27329 * 17 16 15 31 31 H 1.09002 * 109.47122 * 270.22071 * 19 18 17 32 32 H 1.09001 * 109.47171 * 30.22749 * 19 18 17 33 33 H 1.09008 * 109.46913 * 150.22198 * 19 18 17 34 34 H 1.07995 * 119.96607 * 179.75309 * 20 18 17 35 35 H 1.07999 * 120.02215 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2630 1.3558 5 6 3.4749 0.7796 2.1757 6 1 4.1118 0.6082 3.0310 7 6 3.0012 2.0566 1.9079 8 7 2.0512 2.2320 1.0139 9 14 3.7119 3.5260 2.8161 10 1 4.9403 3.9898 2.1226 11 1 2.7124 4.6239 2.8399 12 1 4.0481 3.1323 4.2080 13 6 3.2589 -1.6421 1.8341 14 6 1.9688 -2.0652 2.4881 15 7 0.9974 -2.6227 1.8698 16 6 -0.0981 -2.9476 2.5823 17 6 -1.2979 -3.5563 2.1614 18 6 -2.2957 -3.8041 3.0545 19 6 -3.5687 -4.4602 2.5855 20 6 -2.1559 -3.4552 4.3905 21 6 -0.9970 -2.8554 4.8290 22 6 0.0366 -2.5989 3.9306 23 16 1.6206 -1.8608 4.1461 24 1 -1.0499 0.0002 0.0002 25 1 3.0088 0.9727 -0.3343 26 1 3.0097 -0.7745 -0.6745 27 1 1.7205 3.1244 0.8265 28 1 4.0708 -1.7035 2.5589 29 1 3.4726 -2.3008 0.9925 30 1 -1.4240 -3.8340 1.1255 31 1 -4.2786 -3.6943 2.2733 32 1 -3.3500 -5.1177 1.7441 33 1 -3.9983 -5.0435 3.4001 34 1 -2.9571 -3.6541 5.0867 35 1 -0.8888 -2.5846 5.8689 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859292583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = 120.856953 kcal Electronic energy + Delta-G solvation = -19677.476995 eV Core-core repulsion = 16768.823181 eV Total energy + Delta-G solvation = -2908.653814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22474 -38.67839 -37.47903 -33.76322 -33.40171 -33.03662 -31.21103 -28.86863 -27.95623 -27.63355 -24.88363 -23.53871 -23.01128 -21.08525 -19.37303 -19.12908 -18.35020 -17.34317 -17.12343 -16.61775 -15.92908 -15.61140 -15.43311 -15.17752 -15.06676 -14.76738 -14.18743 -14.00331 -13.38197 -13.35277 -13.22269 -13.03079 -12.76814 -12.67719 -12.41755 -12.27944 -12.25537 -11.93521 -11.74620 -10.98488 -10.84835 -10.73797 -10.46540 -10.25651 -9.42076 -9.07391 -8.95078 -7.86956 -5.36539 -0.41501 0.21198 0.49018 0.97000 1.46448 1.49462 1.53965 1.57552 2.33860 2.52149 2.65238 2.75861 3.11389 3.32302 3.73813 3.78490 3.95000 4.08247 4.23197 4.26546 4.36975 4.51149 4.66623 4.71195 4.78792 4.87889 4.91857 5.02038 5.18760 5.24786 5.34692 5.35762 5.56159 5.58913 5.64992 5.89050 6.21230 6.86808 7.02346 7.38911 7.69007 8.12176 9.12169 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.005503 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.665109 B = 5087.150068 C = 5414.965628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.103 4.103 3 C 0.269 3.731 4 N -0.575 5.575 5 C -0.266 4.266 6 H 0.086 0.914 7 C -0.041 4.041 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.303 1.303 12 H -0.270 1.270 13 C 0.202 3.798 14 C 0.091 3.909 15 N -0.494 5.494 16 C 0.067 3.933 17 C -0.094 4.094 18 C -0.072 4.072 19 C -0.107 4.107 20 C -0.107 4.107 21 C -0.076 4.076 22 C -0.220 4.220 23 S 0.078 5.922 24 H 0.201 0.799 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.248 0.752 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.170 0.830 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 -12.217 5.597 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 C -0.106 4.106 3 C 0.144 3.856 4 N -0.294 5.294 5 C -0.396 4.396 6 H 0.104 0.896 7 C -0.238 4.238 8 N -0.559 5.559 9 Si 0.797 3.203 10 H -0.204 1.204 11 H -0.230 1.230 12 H -0.195 1.195 13 C 0.072 3.928 14 C -0.196 4.196 15 N -0.208 5.208 16 C -0.054 4.054 17 C -0.115 4.115 18 C -0.075 4.075 19 C -0.164 4.164 20 C -0.129 4.129 21 C -0.098 4.098 22 C -0.339 4.339 23 S 0.335 5.665 24 H 0.218 0.782 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.147 0.853 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.187 0.813 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.703 -11.693 5.771 14.232 hybrid contribution -0.852 1.018 -0.079 1.330 sum -6.555 -10.675 5.692 13.760 Atomic orbital electron populations 1.24537 0.96006 1.07940 1.04504 1.24423 0.95792 0.93960 0.96385 1.17983 0.82515 0.99935 0.85131 1.44554 1.72900 1.00805 1.11117 1.19613 1.23702 0.86887 1.09386 0.89608 1.25752 0.97135 1.00888 1.00029 1.70239 1.28113 1.21073 1.36506 0.85270 0.77206 0.78997 0.78858 1.20446 1.23046 1.19468 1.20207 0.88296 0.86138 0.98151 1.28854 1.02068 0.95190 0.93515 1.66194 1.00605 1.16655 1.37390 1.19665 0.94944 1.01773 0.88989 1.20404 0.90503 0.99966 1.00633 1.19828 0.96490 0.97926 0.93295 1.20857 0.92373 1.00388 1.02746 1.21373 0.97227 0.98415 0.95838 1.20675 0.91559 0.98682 0.98932 1.24195 1.01299 1.09048 0.99329 1.83666 1.09818 1.60832 1.12200 0.78180 0.89536 0.92143 0.94245 0.88737 0.89053 0.85330 0.90175 0.90878 0.88960 0.81284 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.46 19.25 74.32 1.43 -14.03 16 2 C -0.10 -5.27 11.16 31.12 0.35 -4.92 16 3 C 0.27 12.98 5.45 84.57 0.46 13.44 16 4 N -0.58 -27.31 2.49 -716.90 -1.79 -29.09 16 5 C -0.27 -13.53 9.71 84.03 0.82 -12.71 16 6 H 0.09 4.16 7.84 -2.91 -0.02 4.14 16 7 C -0.04 -2.19 5.10 84.86 0.43 -1.76 16 8 N -0.92 -51.88 9.00 21.65 0.19 -51.68 16 9 Si 0.97 43.42 29.57 68.60 2.03 45.45 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.20 8.10 6.25 85.64 0.54 8.64 16 14 C 0.09 3.83 6.55 88.68 0.58 4.41 16 15 N -0.49 -21.40 10.44 -182.51 -1.91 -23.31 16 16 C 0.07 2.65 7.00 39.79 0.28 2.93 16 17 C -0.09 -3.04 9.66 22.46 0.22 -2.82 16 18 C -0.07 -1.78 5.83 -20.21 -0.12 -1.89 16 19 C -0.11 -1.68 9.98 71.24 0.71 -0.97 16 20 C -0.11 -2.46 9.68 22.26 0.22 -2.24 16 21 C -0.08 -2.16 10.07 22.39 0.23 -1.94 16 22 C -0.22 -8.09 6.56 22.94 0.15 -7.94 16 23 S 0.08 3.01 23.11 -56.49 -1.31 1.71 16 24 H 0.20 8.80 7.80 -4.42 -0.03 8.76 16 25 H 0.09 4.55 6.25 -2.38 -0.01 4.53 16 26 H 0.06 2.56 7.98 -2.39 -0.02 2.54 16 27 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 29 H 0.09 3.32 7.95 -2.39 -0.02 3.30 16 30 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.08 8.07 -2.39 -0.02 1.06 16 33 H 0.09 1.01 8.08 -2.38 -0.02 0.99 16 34 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -66.36 320.80 4.60 -61.75 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 1.09 Total: 16.97 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 6.28 Total: -21.81 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -3.50 Total: -104.08 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.31 Total: 1.71 kcal Total: -66.36 4.60 -61.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859292583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.611 kcal (2) G-P(sol) polarization free energy of solvation -66.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds