Wall clock time and date at job start Tue Mar 31 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39906 * 109.46806 * 2 1 4 4 F 1.39903 * 109.47371 * 240.00252 * 2 1 3 5 5 C 1.52997 * 109.47562 * 119.99930 * 2 1 3 6 6 O 1.45193 * 109.47068 * 59.99797 * 5 2 1 7 7 C 1.34765 * 117.00108 * 180.02562 * 6 5 2 8 8 O 1.21514 * 119.99595 * 0.02562 * 7 6 5 9 9 C 1.47394 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.39734 * 120.20524 * 359.97438 * 9 7 6 11 11 C 1.37800 * 119.91551 * 180.02562 * 10 9 7 12 12 C 1.38597 * 120.32764 * 359.97438 * 11 10 9 13 13 C 1.38019 * 120.41522 * 0.02562 * 12 11 10 14 14 C 1.38827 * 120.07722 * 0.02562 * 13 12 11 15 15 O 1.35513 * 120.16168 * 180.02562 * 14 13 12 16 16 C 1.34810 * 117.00005 * 354.40002 * 15 14 13 17 17 H 1.07997 * 120.00078 * 5.06925 * 16 15 14 18 18 C 1.38703 * 119.99974 * 185.06721 * 16 15 14 19 19 N 1.31515 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99911 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46987 * 60.00442 * 20 18 16 22 22 H 1.48507 * 109.46808 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47417 * 299.99719 * 20 18 16 24 24 H 1.08995 * 109.47061 * 299.99747 * 1 2 3 25 25 H 1.08994 * 109.47354 * 59.99921 * 1 2 3 26 26 H 1.09007 * 109.46573 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47011 * 300.00029 * 5 2 1 28 28 H 1.08997 * 109.47543 * 180.02562 * 5 2 1 29 29 H 1.07995 * 120.04182 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.83753 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.78289 * 179.74090 * 12 11 10 32 32 H 1.08006 * 119.95762 * 179.97438 * 13 12 11 33 33 H 0.96993 * 120.00448 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 8 1.5561 -2.0901 1.2492 7 6 1.9179 -2.8669 2.2894 8 8 2.6182 -2.4124 3.1723 9 6 1.4640 -4.2677 2.3560 10 6 0.6582 -4.7944 1.3432 11 6 0.2368 -6.1046 1.4118 12 6 0.6088 -6.9044 2.4809 13 6 1.4044 -6.3981 3.4886 14 6 1.8377 -5.0801 3.4373 15 8 2.6194 -4.5814 4.4256 16 6 2.8459 -5.3793 5.4883 17 1 2.4802 -6.3955 5.4883 18 6 3.5486 -4.8952 6.5817 19 7 3.9935 -3.6576 6.5820 20 14 3.8618 -6.0006 8.0546 21 1 4.6416 -7.1890 7.6247 22 1 4.6279 -5.2506 9.0823 23 1 2.5647 -6.4406 8.6282 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.6768 -0.2073 2.1392 28 1 3.1301 -0.7208 1.2494 29 1 0.3652 -4.1753 0.5083 30 1 -0.3863 -6.5104 0.6286 31 1 0.2701 -7.9289 2.5278 32 1 1.6896 -7.0277 4.3185 33 1 4.4846 -3.3188 7.3468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861225847.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:26 Heat of formation + Delta-G solvation = -185.978725 kcal Electronic energy + Delta-G solvation = -22363.264362 eV Core-core repulsion = 18412.030003 eV Total energy + Delta-G solvation = -3951.234360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.05427 -47.05655 -39.97911 -38.77978 -36.50487 -35.86845 -32.48205 -32.37489 -30.70029 -29.05235 -27.47636 -25.53329 -23.64669 -21.95629 -21.49423 -20.37557 -18.15087 -17.96111 -17.53306 -16.90528 -16.69823 -16.37618 -15.65010 -15.30883 -14.70128 -14.45626 -14.03913 -13.95145 -13.86786 -13.60029 -13.41484 -13.26959 -12.73811 -12.66195 -12.51985 -12.37113 -12.21699 -11.81433 -11.42615 -11.21820 -11.01569 -10.96650 -10.83487 -10.55248 -10.38765 -9.87953 -9.38084 -8.98798 -8.40849 -7.45840 -6.57426 -4.17397 1.50600 2.23878 2.73312 3.05246 3.07455 3.10089 3.32100 3.74374 3.83833 4.03765 4.25688 4.47159 4.51820 4.94527 5.05826 5.18742 5.27212 5.34747 5.43500 5.50724 5.58633 5.70441 5.80261 5.97002 6.05175 6.47737 6.55912 6.75543 6.85120 7.00672 7.15109 7.21551 7.58162 7.80699 8.53269 8.82380 9.50185 10.56063 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018928 B = 0.004726 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.914320 B = 5923.521749 C = 7213.913357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.295 3.705 3 F -0.193 7.193 4 F -0.193 7.193 5 C 0.030 3.970 6 O -0.356 6.356 7 C 0.501 3.499 8 O -0.472 6.472 9 C -0.217 4.217 10 C -0.015 4.015 11 C -0.234 4.234 12 C -0.042 4.042 13 C -0.237 4.237 14 C 0.191 3.809 15 O -0.124 6.124 16 C -0.403 4.403 17 H 0.097 0.903 18 C 0.045 3.955 19 N -0.831 5.831 20 Si 0.944 3.056 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.267 1.267 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 1.941 -9.684 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.259 3.741 3 F -0.174 7.174 4 F -0.174 7.174 5 C -0.046 4.046 6 O -0.275 6.275 7 C 0.346 3.654 8 O -0.357 6.357 9 C -0.220 4.220 10 C -0.033 4.033 11 C -0.253 4.253 12 C -0.061 4.061 13 C -0.256 4.256 14 C 0.131 3.869 15 O -0.022 6.022 16 C -0.479 4.479 17 H 0.114 0.886 18 C -0.163 4.163 19 N -0.462 5.462 20 Si 0.767 3.233 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.192 1.192 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.143 0.857 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.152 0.848 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.785 2.548 -9.200 11.712 hybrid contribution 0.381 -0.398 0.664 0.862 sum -6.404 2.150 -8.536 10.886 Atomic orbital electron populations 1.22750 0.90680 1.06382 1.05061 1.20827 0.94578 0.75339 0.83374 1.93033 1.90816 1.36854 1.96729 1.93041 1.90460 1.80822 1.53058 1.23605 1.01587 0.82439 0.96977 1.86475 1.71030 1.21936 1.48091 1.21158 0.78788 0.86499 0.78944 1.91026 1.34155 1.73521 1.37045 1.17919 1.13352 0.90094 1.00617 1.20959 0.92199 0.94936 0.95208 1.20547 1.08671 0.94848 1.01215 1.20986 0.93966 0.98467 0.92642 1.21110 1.06263 0.95701 1.02575 1.19211 0.88191 0.91059 0.88439 1.84134 1.52896 1.40878 1.24286 1.21501 1.37367 0.95714 0.93294 0.88601 1.25431 0.95776 0.96678 0.98423 1.70096 1.31406 1.14174 1.30533 0.85746 0.79071 0.79096 0.79346 1.19228 1.20062 1.19232 0.89244 0.90038 0.88180 0.88339 0.89149 0.85738 0.86886 0.86875 0.84756 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 9.24 37.16 0.34 -1.53 16 2 C 0.30 3.78 2.35 -26.73 -0.06 3.71 16 3 F -0.19 -2.52 17.06 2.25 0.04 -2.49 16 4 F -0.19 -2.76 17.01 2.25 0.04 -2.73 16 5 C 0.03 0.45 5.11 37.16 0.19 0.64 16 6 O -0.36 -6.25 8.75 -40.67 -0.36 -6.61 16 7 C 0.50 10.98 7.89 34.46 0.27 11.25 16 8 O -0.47 -12.36 14.96 -26.59 -0.40 -12.76 16 9 C -0.22 -4.68 5.89 -104.83 -0.62 -5.30 16 10 C -0.01 -0.26 9.61 -39.18 -0.38 -0.63 16 11 C -0.23 -3.74 10.02 -39.61 -0.40 -4.14 16 12 C -0.04 -0.71 10.03 -39.53 -0.40 -1.11 16 13 C -0.24 -4.88 9.16 -39.44 -0.36 -5.24 16 14 C 0.19 4.59 6.66 -38.58 -0.26 4.33 16 15 O -0.12 -3.54 7.84 -21.03 -0.16 -3.70 16 16 C -0.40 -11.00 9.49 30.90 0.29 -10.71 16 17 H 0.10 2.35 5.21 -52.49 -0.27 2.07 16 18 C 0.05 1.22 5.49 -17.52 -0.10 1.13 16 19 N -0.83 -24.27 13.67 55.48 0.76 -23.51 16 20 Si 0.94 19.78 29.55 -169.99 -5.02 14.76 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.10 0.99 7.68 -51.93 -0.40 0.59 16 27 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.12 1.83 7.61 -52.49 -0.40 1.44 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.13 2.69 5.64 -52.48 -0.30 2.39 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -32.09 304.21 -5.03 -37.11 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.04 Total: 2.92 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.47 Total: -7.59 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.76 Total: -23.51 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.92 Total: -23.06 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.08 Total: -5.21 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.09 -5.03 -37.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861225847.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.864 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds