Wall clock time and date at job start Tue Mar 31 2020 05:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39906 * 109.46806 * 2 1 4 4 F 1.39903 * 109.47371 * 240.00252 * 2 1 3 5 5 C 1.52997 * 109.47562 * 119.99930 * 2 1 3 6 6 O 1.45193 * 109.47068 * 59.99797 * 5 2 1 7 7 C 1.34765 * 117.00108 * 180.02562 * 6 5 2 8 8 O 1.21514 * 119.99595 * 0.02562 * 7 6 5 9 9 C 1.47394 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.39734 * 120.20524 * 359.97438 * 9 7 6 11 11 C 1.37800 * 119.91551 * 180.02562 * 10 9 7 12 12 C 1.38597 * 120.32764 * 359.97438 * 11 10 9 13 13 C 1.38019 * 120.41522 * 0.02562 * 12 11 10 14 14 C 1.38827 * 120.07722 * 0.02562 * 13 12 11 15 15 O 1.35513 * 120.16168 * 180.02562 * 14 13 12 16 16 C 1.34810 * 117.00005 * 354.40002 * 15 14 13 17 17 H 1.07997 * 120.00078 * 5.06925 * 16 15 14 18 18 C 1.38703 * 119.99974 * 185.06721 * 16 15 14 19 19 N 1.31515 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99911 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46987 * 60.00442 * 20 18 16 22 22 H 1.48507 * 109.46808 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47417 * 299.99719 * 20 18 16 24 24 H 1.08995 * 109.47061 * 299.99747 * 1 2 3 25 25 H 1.08994 * 109.47354 * 59.99921 * 1 2 3 26 26 H 1.09007 * 109.46573 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47011 * 300.00029 * 5 2 1 28 28 H 1.08997 * 109.47543 * 180.02562 * 5 2 1 29 29 H 1.07995 * 120.04182 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.83753 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.78289 * 179.74090 * 12 11 10 32 32 H 1.08006 * 119.95762 * 179.97438 * 13 12 11 33 33 H 0.96993 * 120.00448 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 8 1.5561 -2.0901 1.2492 7 6 1.9179 -2.8669 2.2894 8 8 2.6182 -2.4124 3.1723 9 6 1.4640 -4.2677 2.3560 10 6 0.6582 -4.7944 1.3432 11 6 0.2368 -6.1046 1.4118 12 6 0.6088 -6.9044 2.4809 13 6 1.4044 -6.3981 3.4886 14 6 1.8377 -5.0801 3.4373 15 8 2.6194 -4.5814 4.4256 16 6 2.8459 -5.3793 5.4883 17 1 2.4802 -6.3955 5.4883 18 6 3.5486 -4.8952 6.5817 19 7 3.9935 -3.6576 6.5820 20 14 3.8618 -6.0006 8.0546 21 1 4.6416 -7.1890 7.6247 22 1 4.6279 -5.2506 9.0823 23 1 2.5647 -6.4406 8.6282 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.6768 -0.2073 2.1392 28 1 3.1301 -0.7208 1.2494 29 1 0.3652 -4.1753 0.5083 30 1 -0.3863 -6.5104 0.6286 31 1 0.2701 -7.9289 2.5278 32 1 1.6896 -7.0277 4.3185 33 1 4.4846 -3.3188 7.3468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861225847.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:25 Heat of formation + Delta-G solvation = -205.263462 kcal Electronic energy + Delta-G solvation = -22364.100611 eV Core-core repulsion = 18412.030003 eV Total energy + Delta-G solvation = -3952.070609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.14219 -48.15422 -41.64852 -40.45207 -38.15194 -37.54716 -34.38153 -33.51398 -32.19311 -30.64892 -28.62090 -27.42627 -25.18307 -23.42699 -22.79514 -21.93581 -19.92598 -19.47802 -18.86146 -18.24897 -18.13918 -17.70765 -17.06586 -16.82952 -16.32875 -16.13754 -15.63953 -15.41016 -15.20227 -15.04001 -14.58956 -14.50554 -14.40827 -13.98117 -13.76157 -13.57775 -13.42660 -13.17144 -13.02531 -12.73572 -12.53080 -12.41924 -12.17402 -12.08982 -11.88540 -11.65255 -11.12365 -10.85124 -9.93940 -9.12896 -8.49277 -6.20371 -0.07875 0.68924 1.28350 1.33896 1.46377 1.51436 1.66622 2.14137 2.60980 2.81172 2.97699 3.13509 3.20798 3.34936 3.45452 3.87048 4.04837 4.07759 4.14954 4.27380 4.50962 4.57714 4.59610 4.72777 4.89647 5.02527 5.04250 5.10902 5.19649 5.46138 5.58168 5.66718 5.91951 6.11869 6.83650 6.91094 7.69683 8.70539 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018928 B = 0.004726 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.914320 B = 5923.521749 C = 7213.913357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.301 3.699 3 F -0.194 7.194 4 F -0.201 7.201 5 C 0.020 3.980 6 O -0.337 6.337 7 C 0.503 3.497 8 O -0.525 6.525 9 C -0.236 4.236 10 C -0.011 4.011 11 C -0.203 4.203 12 C -0.026 4.026 13 C -0.256 4.256 14 C 0.157 3.843 15 O -0.187 6.187 16 C -0.428 4.428 17 H 0.112 0.888 18 C -0.019 4.019 19 N -0.904 5.904 20 Si 1.023 2.977 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.253 1.253 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.131 0.869 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 -0.202 -12.047 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.265 3.735 3 F -0.175 7.175 4 F -0.182 7.182 5 C -0.055 4.055 6 O -0.255 6.255 7 C 0.351 3.649 8 O -0.415 6.415 9 C -0.239 4.239 10 C -0.029 4.029 11 C -0.221 4.221 12 C -0.043 4.043 13 C -0.275 4.275 14 C 0.102 3.898 15 O -0.089 6.089 16 C -0.503 4.503 17 H 0.130 0.870 18 C -0.219 4.219 19 N -0.539 5.539 20 Si 0.841 3.159 21 H -0.177 1.177 22 H -0.200 1.200 23 H -0.177 1.177 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.176 0.824 30 H 0.184 0.816 31 H 0.178 0.822 32 H 0.149 0.851 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.653 0.375 -11.648 15.132 hybrid contribution 1.010 0.226 0.953 1.407 sum -8.643 0.601 -10.694 13.764 Atomic orbital electron populations 1.22798 0.87589 1.07125 1.06877 1.20910 0.96388 0.74693 0.81551 1.93036 1.91089 1.36748 1.96609 1.93026 1.90812 1.81052 1.53300 1.23875 1.01135 0.81364 0.99143 1.86428 1.70220 1.22879 1.45999 1.21438 0.77612 0.87154 0.78722 1.91018 1.36586 1.74664 1.39234 1.18382 1.14249 0.89945 1.01330 1.21411 0.90550 0.96290 0.94602 1.21234 1.06221 0.93526 1.01159 1.21552 0.91243 1.00647 0.90908 1.21292 1.07573 0.94406 1.04193 1.19977 0.88436 0.93020 0.88368 1.84139 1.56387 1.42452 1.25950 1.22052 1.37900 0.96515 0.93838 0.87048 1.26777 0.95269 0.98223 1.01634 1.70282 1.34684 1.17023 1.31889 0.84605 0.79500 0.76978 0.74817 1.17733 1.19954 1.17654 0.87968 0.87818 0.87900 0.87785 0.90554 0.82359 0.81612 0.82191 0.85100 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 9.24 71.98 0.67 -2.49 16 2 C 0.30 7.30 2.35 30.59 0.07 7.37 16 3 F -0.19 -4.85 17.06 44.97 0.77 -4.09 16 4 F -0.20 -5.45 17.01 44.97 0.76 -4.69 16 5 C 0.02 0.63 5.11 71.98 0.37 0.99 16 6 O -0.34 -11.72 8.75 -56.76 -0.50 -12.21 16 7 C 0.50 22.76 7.89 70.23 0.55 23.32 16 8 O -0.53 -29.50 14.96 26.79 0.40 -29.10 16 9 C -0.24 -10.16 5.89 -20.00 -0.12 -10.28 16 10 C -0.01 -0.33 9.61 22.53 0.22 -0.11 16 11 C -0.20 -5.24 10.02 22.25 0.22 -5.02 16 12 C -0.03 -0.74 10.03 22.30 0.22 -0.51 16 13 C -0.26 -10.24 9.16 22.36 0.20 -10.04 16 14 C 0.16 7.78 6.66 22.92 0.15 7.93 16 15 O -0.19 -11.41 7.84 0.97 0.01 -11.40 16 16 C -0.43 -24.71 9.49 67.93 0.64 -24.07 16 17 H 0.11 5.69 5.21 -2.91 -0.02 5.67 16 18 C -0.02 -1.09 5.49 84.85 0.47 -0.63 16 19 N -0.90 -57.01 13.67 21.62 0.30 -56.71 16 20 Si 1.02 42.29 29.55 68.60 2.03 44.31 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.10 1.70 7.68 -2.38 -0.02 1.68 16 27 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.16 3.83 7.61 -2.91 -0.02 3.81 16 30 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.13 5.23 5.64 -2.91 -0.02 5.22 16 33 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -78.63 304.21 8.59 -70.04 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.15 Total: 17.38 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 3.67 Total: -13.53 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.30 Total: -56.71 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.09 Total: -52.71 kcal Atomic # 9 Polarization: -10.31 SS G_CDS: 1.53 Total: -8.77 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -78.63 8.59 -70.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861225847.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.223 kcal (2) G-P(sol) polarization free energy of solvation -78.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds