Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86804 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47103 * 300.00829 * 3 2 1 6 6 H 1.48504 * 109.46698 * 60.00404 * 3 2 1 7 7 C 1.38790 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99821 * 179.97438 * 7 2 1 9 9 O 1.34854 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.34882 * 116.99946 * 180.02562 * 9 7 2 11 11 O 1.21642 * 119.99776 * 359.97438 * 10 9 7 12 12 C 1.46525 * 120.00011 * 180.02562 * 10 9 7 13 13 C 1.36988 * 126.92700 * 179.97438 * 12 10 9 14 14 C 1.50700 * 126.08884 * 359.97438 * 13 12 10 15 15 F 1.39897 * 109.47331 * 210.00458 * 14 13 12 16 16 F 1.39901 * 109.47258 * 330.00556 * 14 13 12 17 17 N 1.33406 * 107.81969 * 179.73676 * 13 12 10 18 18 C 1.30581 * 109.70901 * 0.40509 * 17 13 12 19 19 N 1.34881 * 109.01081 * 359.63399 * 18 17 13 20 20 C 1.46445 * 124.99346 * 180.14434 * 19 18 17 21 21 C 1.53267 * 108.81867 * 342.94059 * 20 19 18 22 22 C 1.53158 * 109.44108 * 50.23086 * 21 20 19 23 23 C 1.51126 * 127.07597 * 179.89598 * 18 17 13 24 24 H 0.97001 * 119.99514 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47286 * 90.00359 * 14 13 12 26 26 H 1.08999 * 109.57803 * 223.13782 * 20 19 18 27 27 H 1.09005 * 109.58181 * 102.74043 * 20 19 18 28 28 H 1.09002 * 109.47765 * 290.24124 * 21 20 19 29 29 H 1.09004 * 109.47556 * 170.22368 * 21 20 19 30 30 H 1.08999 * 109.51280 * 170.73393 * 22 21 20 31 31 H 1.09000 * 109.51064 * 50.58119 * 22 21 20 32 32 H 1.08999 * 109.70902 * 283.36407 * 23 18 17 33 33 H 1.08998 * 109.70808 * 43.94517 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8895 2.3966 -1.2124 6 1 1.8897 2.3964 1.2126 7 6 2.0083 -1.2020 -0.0005 8 1 3.0884 -1.2019 -0.0010 9 8 1.3340 -2.3698 -0.0005 10 6 2.0686 -3.5010 -0.0005 11 8 3.2834 -3.4373 -0.0010 12 6 1.4034 -4.8066 -0.0011 13 6 2.0055 -6.0371 -0.0017 14 6 3.4895 -6.2992 -0.0024 15 9 3.7498 -7.5049 -0.6623 16 9 4.1472 -5.2552 -0.6618 17 7 1.0441 -6.9620 0.0038 18 6 -0.1255 -6.3814 -0.0010 19 7 0.0479 -5.0438 -0.0016 20 6 -1.0339 -4.0567 -0.0034 21 6 -2.3335 -4.7482 -0.4300 22 6 -2.5323 -6.0181 0.4028 23 6 -1.4777 -7.0564 0.0003 24 1 -0.4849 0.8401 0.0004 25 1 3.8478 -6.3627 1.0251 26 1 -0.7978 -3.2574 -0.7059 27 1 -1.1522 -3.6425 0.9979 28 1 -2.2753 -5.0117 -1.4861 29 1 -3.1740 -4.0730 -0.2696 30 1 -3.5284 -6.4212 0.2200 31 1 -2.4236 -5.7802 1.4610 32 1 -1.6991 -7.4378 -0.9965 33 1 -1.4777 -7.8780 0.7166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869842949.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = -125.874074 kcal Electronic energy + Delta-G solvation = -23303.988771 eV Core-core repulsion = 19387.653495 eV Total energy + Delta-G solvation = -3916.335275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.31675 -46.29957 -42.21563 -38.83906 -36.66705 -35.20201 -33.24222 -32.25551 -30.55734 -28.89563 -26.47192 -25.62089 -24.04380 -22.51690 -21.50927 -19.76965 -19.11626 -17.89111 -17.35953 -16.98904 -16.43067 -16.24086 -15.78914 -15.24514 -14.65459 -14.54752 -14.45323 -14.09589 -14.04837 -13.74491 -13.33743 -13.11958 -12.75875 -12.56565 -12.26757 -11.79425 -11.75568 -11.34606 -11.20704 -11.16049 -11.05559 -10.84378 -10.57837 -10.49011 -10.05614 -9.92593 -9.39851 -9.18061 -8.73477 -8.23099 -6.60469 -4.22185 1.55778 2.80728 2.89737 3.06883 3.11577 3.18886 3.78103 3.85890 3.94091 4.34014 4.42719 4.56542 4.60181 4.71939 4.82670 5.00319 5.05344 5.29227 5.36842 5.43504 5.56060 5.64735 5.71850 5.80565 5.85896 5.94361 6.09149 6.39502 6.45221 6.66965 7.21589 7.29885 7.77673 8.04784 8.53500 8.90157 9.63744 10.57475 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.006939 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.113624 B = 4034.132063 C = 5813.496010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.372 4.372 8 H 0.101 0.899 9 O -0.211 6.211 10 C 0.456 3.544 11 O -0.514 6.514 12 C 0.019 3.981 13 C -0.027 4.027 14 C 0.361 3.639 15 F -0.201 7.201 16 F -0.166 7.166 17 N -0.467 5.467 18 C 0.216 3.784 19 N -0.421 5.421 20 C 0.101 3.899 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.030 4.030 24 H 0.271 0.729 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.355 -9.536 1.256 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.162 4.162 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.448 4.448 8 H 0.118 0.882 9 O -0.118 6.118 10 C 0.302 3.698 11 O -0.408 6.408 12 C -0.099 4.099 13 C -0.161 4.161 14 C 0.306 3.694 15 F -0.183 7.183 16 F -0.147 7.147 17 N -0.186 5.186 18 C -0.047 4.047 19 N -0.103 5.103 20 C -0.019 4.019 21 C -0.172 4.172 22 C -0.165 4.165 23 C -0.069 4.069 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.188 -10.021 1.227 11.842 hybrid contribution 0.255 1.727 -0.101 1.748 sum -5.933 -8.295 1.125 10.260 Atomic orbital electron populations 1.69950 1.06031 1.27922 1.46057 1.25353 0.95912 0.98896 0.96013 0.85564 0.79651 0.79645 0.78186 1.18730 1.20078 1.20090 1.21391 0.92753 0.79359 1.51296 0.88159 1.83907 1.39156 1.13257 1.75488 1.19257 0.85859 0.83617 0.81070 1.90818 1.13315 1.86592 1.50088 1.20136 0.82523 0.94194 1.13095 1.21221 0.95715 0.88469 1.10699 1.19205 0.85243 0.71904 0.93091 1.92965 1.94709 1.46574 1.84006 1.93186 1.81294 1.56893 1.83333 1.69658 0.96734 1.31923 1.20269 1.23306 0.96256 0.80219 1.04897 1.45487 1.06074 1.07905 1.50795 1.22255 0.83764 0.90364 1.05562 1.21952 0.96865 0.97567 1.00853 1.21715 0.99009 0.95032 1.00732 1.20242 0.85398 0.97431 1.03855 0.91936 0.86543 0.86658 0.88741 0.90730 0.88857 0.89924 0.90954 0.89079 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.23 13.67 55.49 0.76 -22.47 16 2 C 0.04 1.13 5.50 -17.52 -0.10 1.03 16 3 Si 0.95 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.37 -10.49 9.65 30.94 0.30 -10.19 16 8 H 0.10 2.88 6.86 -52.48 -0.36 2.52 16 9 O -0.21 -5.73 7.90 -22.05 -0.17 -5.90 16 10 C 0.46 11.60 7.82 34.07 0.27 11.87 16 11 O -0.51 -13.84 12.43 -19.38 -0.24 -14.08 16 12 C 0.02 0.41 6.89 -82.38 -0.57 -0.16 16 13 C -0.03 -0.54 6.78 -82.36 -0.56 -1.10 16 14 C 0.36 6.79 5.63 36.01 0.20 6.99 16 15 F -0.20 -3.72 17.29 2.25 0.04 -3.68 16 16 F -0.17 -3.64 13.51 2.25 0.03 -3.61 16 17 N -0.47 -8.83 11.14 -6.59 -0.07 -8.90 16 18 C 0.22 3.55 7.64 -155.29 -1.19 2.37 16 19 N -0.42 -7.74 3.16 -109.77 -0.35 -8.08 16 20 C 0.10 1.64 6.11 -3.93 -0.02 1.62 16 21 C -0.13 -1.50 5.95 -26.51 -0.16 -1.66 16 22 C -0.13 -1.18 5.96 -26.46 -0.16 -1.34 16 23 C -0.03 -0.33 6.33 -27.48 -0.17 -0.51 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 26 H 0.12 2.21 7.24 -51.93 -0.38 1.84 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 28 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 291.72 15.07 4.40 4.40 Total: -1.00 -32.54 291.72 -6.04 -38.58 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.25 Total: -0.52 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -2.15 Total: 8.93 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.34 Total: -39.46 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.42 Total: -19.99 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.07 Total: -7.29 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.54 -6.04 -38.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869842949.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.295 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds