Wall clock time and date at job start Tue Mar 31 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86807 * 119.99885 * 2 1 4 4 H 1.48495 * 109.47024 * 270.00183 * 3 2 1 5 5 H 1.48509 * 109.47062 * 29.99825 * 3 2 1 6 6 H 1.48499 * 109.47201 * 149.99791 * 3 2 1 7 7 C 1.38749 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99965 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99550 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99503 * 180.02562 * 9 7 2 11 11 O 1.21217 * 120.00397 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99694 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.46877 * 179.97438 * 12 10 9 14 14 N 1.40078 * 126.03740 * 269.68657 * 13 12 10 15 15 C 1.30836 * 108.20570 * 179.85612 * 14 13 12 16 16 C 1.50706 * 125.90118 * 180.14811 * 15 14 13 17 17 F 1.39892 * 109.47038 * 30.30099 * 16 15 14 18 18 F 1.39894 * 109.47052 * 150.30566 * 16 15 14 19 19 C 1.39874 * 108.20052 * 0.40637 * 15 14 13 20 20 C 1.34947 * 126.03702 * 90.00225 * 13 12 10 21 21 C 1.50709 * 126.12307 * 359.97438 * 20 13 12 22 22 C 1.53002 * 117.49548 * 213.62212 * 21 20 13 23 23 C 1.53004 * 117.49447 * 145.00122 * 21 20 13 24 24 H 0.97000 * 120.00282 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46978 * 60.00225 * 12 10 9 26 26 H 1.09000 * 109.46976 * 299.99470 * 12 10 9 27 27 H 1.09000 * 109.46815 * 270.30046 * 16 15 14 28 28 H 1.07999 * 126.03656 * 179.73816 * 19 15 14 29 29 H 1.08997 * 115.54940 * 359.33131 * 21 20 13 30 30 H 1.08997 * 117.49854 * 359.97438 * 22 21 20 31 31 H 1.09000 * 117.49626 * 145.02430 * 22 21 20 32 32 H 1.08992 * 117.49910 * 214.97657 * 23 21 20 33 33 H 1.08997 * 117.50058 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6528 0.7000 6 1 3.5460 1.4403 0.7001 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2015 0.0010 9 8 1.3336 -2.3700 0.0016 10 6 2.0652 -3.4964 0.0026 11 8 3.2758 -3.4330 0.0021 12 6 1.3811 -4.8392 0.0032 13 7 2.3902 -5.9013 0.0037 14 7 2.9533 -6.5036 -1.1288 15 6 3.8150 -7.4027 -0.7278 16 6 4.6515 -8.2844 -1.6189 17 9 4.9230 -7.6137 -2.8162 18 9 5.8539 -8.5927 -0.9738 19 6 3.8215 -7.4084 0.6709 20 6 2.9370 -6.4764 1.0951 21 6 2.6194 -6.1407 2.5296 22 6 3.7563 -6.2460 3.5481 23 6 2.6347 -7.2867 3.5433 24 1 -0.4850 0.8400 0.0004 25 1 0.7587 -4.9302 -0.8870 26 1 0.7581 -4.9291 0.8931 27 1 4.1078 -9.2046 -1.8331 28 1 4.4257 -8.0444 1.3009 29 1 1.8841 -5.3495 2.6755 30 1 4.7337 -6.5584 3.1807 31 1 3.7691 -5.5237 4.3644 32 1 1.9098 -7.2491 4.3564 33 1 2.8740 -8.2834 3.1727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873435560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:20 Heat of formation + Delta-G solvation = -72.025327 kcal Electronic energy + Delta-G solvation = -22229.648373 eV Core-core repulsion = 18315.648155 eV Total energy + Delta-G solvation = -3914.000218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.96308 -46.99083 -41.41411 -39.03866 -37.15357 -35.46638 -33.42943 -32.25905 -30.01668 -28.83383 -26.20810 -24.92333 -23.58471 -22.47935 -20.98306 -20.37623 -19.19668 -17.90614 -17.57121 -17.47614 -16.95942 -16.88739 -15.90821 -15.21778 -15.00816 -14.87227 -14.44569 -14.29862 -13.95817 -13.81080 -13.58857 -13.31858 -12.88149 -12.38961 -12.31423 -12.00200 -11.71023 -11.66608 -11.36313 -11.23036 -11.03418 -10.86913 -10.52693 -10.48675 -10.45001 -9.97109 -9.57519 -8.95590 -8.68517 -8.43434 -6.52177 -4.20591 1.70625 2.29716 2.50818 3.01126 3.13994 3.19755 3.32723 3.65720 3.82237 3.88519 4.09179 4.27782 4.41278 4.50220 4.74233 4.84579 4.89047 4.93755 5.05148 5.12118 5.37006 5.47719 5.52016 5.61001 5.78679 5.82325 5.99986 6.17580 6.34837 6.49784 6.99204 7.28594 7.62931 7.82308 8.54399 8.96151 9.65562 10.65053 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.004483 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.145286 B = 6245.000907 C = 7119.843843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.045 3.955 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.382 4.382 8 H 0.097 0.903 9 O -0.208 6.208 10 C 0.376 3.624 11 O -0.536 6.536 12 C 0.146 3.854 13 N -0.332 5.332 14 N -0.242 5.242 15 C -0.011 4.011 16 C 0.363 3.637 17 F -0.191 7.191 18 F -0.193 7.193 19 C -0.251 4.251 20 C 0.142 3.858 21 C -0.109 4.109 22 C -0.155 4.155 23 C -0.159 4.159 24 H 0.271 0.729 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.152 0.848 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -16.448 4.655 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.160 4.160 3 Si 0.769 3.231 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.458 4.458 8 H 0.114 0.886 9 O -0.115 6.115 10 C 0.220 3.780 11 O -0.431 6.431 12 C 0.023 3.977 13 N -0.114 5.114 14 N -0.064 5.064 15 C -0.178 4.178 16 C 0.308 3.692 17 F -0.173 7.173 18 F -0.174 7.174 19 C -0.280 4.280 20 C 0.015 3.985 21 C -0.129 4.129 22 C -0.192 4.192 23 C -0.197 4.197 24 H 0.081 0.919 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.169 0.831 29 H 0.137 0.863 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.392 -15.555 3.609 16.146 hybrid contribution 0.829 0.711 0.551 1.223 sum 3.221 -14.844 4.160 15.749 Atomic orbital electron populations 1.69981 1.06003 1.27951 1.45985 1.25348 0.95862 0.98861 0.95918 0.85647 0.79045 0.79473 0.78908 1.19730 1.20175 1.19045 1.21244 0.92456 0.79402 1.52716 0.88582 1.83845 1.39122 1.13133 1.75390 1.23078 0.87157 0.87209 0.80542 1.90645 1.15197 1.87553 1.49742 1.20935 0.87631 0.81915 1.07215 1.47986 1.32501 1.28066 1.02888 1.77348 1.12049 1.09399 1.07651 1.22576 1.00477 0.99810 0.94899 1.19376 0.80583 0.93069 0.76189 1.93038 1.94484 1.82951 1.46791 1.93005 1.48652 1.93536 1.82234 1.20663 1.07152 1.07209 0.92958 1.20103 0.95328 0.94237 0.88866 1.20462 1.04335 1.02823 0.85296 1.23056 0.94178 1.01902 1.00084 1.23078 1.01966 0.94472 1.00148 0.91881 0.85397 0.85667 0.85359 0.83077 0.86303 0.87970 0.87830 0.87930 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.24 5.49 -17.53 -0.10 1.14 16 3 Si 0.95 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.38 -11.17 9.64 30.92 0.30 -10.87 16 8 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.21 -5.79 9.75 -20.72 -0.20 -5.99 16 10 C 0.38 9.14 7.97 36.01 0.29 9.43 16 11 O -0.54 -14.80 15.67 -19.06 -0.30 -15.10 16 12 C 0.15 2.60 6.77 -5.19 -0.04 2.57 16 13 N -0.33 -6.03 3.10 -58.31 -0.18 -6.21 16 14 N -0.24 -4.56 12.51 33.67 0.42 -4.14 16 15 C -0.01 -0.17 6.84 -82.40 -0.56 -0.74 16 16 C 0.36 4.58 5.84 36.01 0.21 4.79 16 17 F -0.19 -2.94 17.27 2.25 0.04 -2.90 16 18 F -0.19 -2.49 17.06 2.25 0.04 -2.46 16 19 C -0.25 -3.68 9.43 -40.01 -0.38 -4.06 16 20 C 0.14 2.24 6.62 -82.26 -0.54 1.69 16 21 C -0.11 -1.42 5.97 -91.76 -0.55 -1.96 16 22 C -0.15 -1.69 10.04 -26.73 -0.27 -1.96 16 23 C -0.16 -1.47 10.05 -26.73 -0.27 -1.74 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.13 2.05 8.14 -51.93 -0.42 1.62 16 26 H 0.13 1.77 7.24 -51.93 -0.38 1.40 16 27 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.12 1.56 7.26 -51.93 -0.38 1.18 16 30 H 0.10 1.12 7.93 -51.93 -0.41 0.71 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.85 7.96 -51.93 -0.41 0.44 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -35.71 310.74 -4.86 -40.57 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -3.19 Total: 1.05 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.91 Total: -1.71 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 1.00 Total: -34.24 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.50 Total: -21.09 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.08 Total: -5.35 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.71 -4.86 -40.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873435560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.455 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds