Wall clock time and date at job start Tue Mar 31 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86807 * 119.99885 * 2 1 4 4 H 1.48495 * 109.47024 * 270.00183 * 3 2 1 5 5 H 1.48509 * 109.47062 * 29.99825 * 3 2 1 6 6 H 1.48499 * 109.47201 * 149.99791 * 3 2 1 7 7 C 1.38749 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99965 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99550 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99503 * 180.02562 * 9 7 2 11 11 O 1.21217 * 120.00397 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99694 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.46877 * 179.97438 * 12 10 9 14 14 N 1.40078 * 126.03740 * 269.68657 * 13 12 10 15 15 C 1.30836 * 108.20570 * 179.85612 * 14 13 12 16 16 C 1.50706 * 125.90118 * 180.14811 * 15 14 13 17 17 F 1.39892 * 109.47038 * 30.30099 * 16 15 14 18 18 F 1.39894 * 109.47052 * 150.30566 * 16 15 14 19 19 C 1.39874 * 108.20052 * 0.40637 * 15 14 13 20 20 C 1.34947 * 126.03702 * 90.00225 * 13 12 10 21 21 C 1.50709 * 126.12307 * 359.97438 * 20 13 12 22 22 C 1.53002 * 117.49548 * 213.62212 * 21 20 13 23 23 C 1.53004 * 117.49447 * 145.00122 * 21 20 13 24 24 H 0.97000 * 120.00282 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46978 * 60.00225 * 12 10 9 26 26 H 1.09000 * 109.46976 * 299.99470 * 12 10 9 27 27 H 1.09000 * 109.46815 * 270.30046 * 16 15 14 28 28 H 1.07999 * 126.03656 * 179.73816 * 19 15 14 29 29 H 1.08997 * 115.54940 * 359.33131 * 21 20 13 30 30 H 1.08997 * 117.49854 * 359.97438 * 22 21 20 31 31 H 1.09000 * 117.49626 * 145.02430 * 22 21 20 32 32 H 1.08992 * 117.49910 * 214.97657 * 23 21 20 33 33 H 1.08997 * 117.50058 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6528 0.7000 6 1 3.5460 1.4403 0.7001 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2015 0.0010 9 8 1.3336 -2.3700 0.0016 10 6 2.0652 -3.4964 0.0026 11 8 3.2758 -3.4330 0.0021 12 6 1.3811 -4.8392 0.0032 13 7 2.3902 -5.9013 0.0037 14 7 2.9533 -6.5036 -1.1288 15 6 3.8150 -7.4027 -0.7278 16 6 4.6515 -8.2844 -1.6189 17 9 4.9230 -7.6137 -2.8162 18 9 5.8539 -8.5927 -0.9738 19 6 3.8215 -7.4084 0.6709 20 6 2.9370 -6.4764 1.0951 21 6 2.6194 -6.1407 2.5296 22 6 3.7563 -6.2460 3.5481 23 6 2.6347 -7.2867 3.5433 24 1 -0.4850 0.8400 0.0004 25 1 0.7587 -4.9302 -0.8870 26 1 0.7581 -4.9291 0.8931 27 1 4.1078 -9.2046 -1.8331 28 1 4.4257 -8.0444 1.3009 29 1 1.8841 -5.3495 2.6755 30 1 4.7337 -6.5584 3.1807 31 1 3.7691 -5.5237 4.3644 32 1 1.9098 -7.2491 4.3564 33 1 2.8740 -8.2834 3.1727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873435560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:20 Heat of formation + Delta-G solvation = -94.763833 kcal Electronic energy + Delta-G solvation = -22230.634389 eV Core-core repulsion = 18315.648155 eV Total energy + Delta-G solvation = -3914.986234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.01083 -48.05408 -42.65354 -41.03559 -38.06250 -37.49380 -34.85904 -34.37682 -31.22204 -30.15863 -27.86056 -26.56312 -24.67477 -23.25651 -22.66287 -21.61477 -20.43527 -20.01285 -18.91563 -18.66172 -18.47665 -17.93157 -17.29055 -16.93744 -16.75085 -16.19018 -15.96822 -15.53459 -15.33330 -14.87825 -14.81578 -14.40261 -14.38041 -13.88855 -13.76754 -13.67823 -13.10217 -12.99553 -12.46964 -12.42051 -12.39537 -12.24058 -12.12705 -12.04597 -11.93272 -11.43480 -11.39788 -10.77651 -10.37959 -9.62752 -8.62408 -6.43096 0.44275 1.05983 1.17221 1.31298 1.37327 1.47305 1.50869 2.05630 2.55201 2.69010 2.88224 2.98880 3.11802 3.23829 3.43996 3.75736 3.85125 3.95721 3.96042 4.08388 4.14201 4.38804 4.44043 4.51201 4.77806 4.79869 4.97685 5.06141 5.15786 5.25112 5.29056 5.72334 5.75726 6.39726 6.50281 6.81981 7.57503 8.57143 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.004483 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.145286 B = 6245.000907 C = 7119.843843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.004 3.996 3 Si 1.015 2.985 4 H -0.262 1.262 5 H -0.254 1.254 6 H -0.267 1.267 7 C -0.422 4.422 8 H 0.077 0.923 9 O -0.232 6.232 10 C 0.379 3.621 11 O -0.574 6.574 12 C 0.157 3.843 13 N -0.353 5.353 14 N -0.292 5.292 15 C -0.012 4.012 16 C 0.362 3.638 17 F -0.210 7.210 18 F -0.194 7.194 19 C -0.253 4.253 20 C 0.136 3.864 21 C -0.143 4.143 22 C -0.159 4.159 23 C -0.122 4.122 24 H 0.282 0.718 25 H 0.146 0.854 26 H 0.163 0.837 27 H 0.184 0.816 28 H 0.180 0.820 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -17.558 5.771 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.198 4.198 3 Si 0.834 3.166 4 H -0.187 1.187 5 H -0.178 1.178 6 H -0.191 1.191 7 C -0.498 4.498 8 H 0.094 0.906 9 O -0.139 6.139 10 C 0.225 3.775 11 O -0.471 6.471 12 C 0.035 3.965 13 N -0.135 5.135 14 N -0.114 5.114 15 C -0.180 4.180 16 C 0.307 3.693 17 F -0.192 7.192 18 F -0.175 7.175 19 C -0.281 4.281 20 C 0.010 3.990 21 C -0.163 4.163 22 C -0.197 4.197 23 C -0.159 4.159 24 H 0.091 0.909 25 H 0.163 0.837 26 H 0.181 0.819 27 H 0.201 0.799 28 H 0.198 0.802 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.442 -16.695 4.728 17.523 hybrid contribution 0.858 0.937 0.244 1.293 sum 3.300 -15.759 4.971 16.850 Atomic orbital electron populations 1.70041 1.07429 1.29670 1.46000 1.26468 0.96904 1.02027 0.94380 0.84668 0.77715 0.74707 0.79531 1.18663 1.17788 1.19090 1.21345 0.91993 0.80907 1.55562 0.90573 1.83864 1.39805 1.13829 1.76419 1.24388 0.86997 0.88469 0.77688 1.90603 1.17194 1.88324 1.51003 1.21038 0.87453 0.78242 1.09813 1.48052 1.33480 1.28443 1.03561 1.77283 1.14032 1.11196 1.08847 1.23243 0.99566 0.98978 0.96171 1.19959 0.80448 0.94085 0.74793 1.92999 1.94615 1.83668 1.47876 1.93000 1.48885 1.93403 1.82243 1.21041 1.06985 1.07301 0.92806 1.20726 0.94871 0.93813 0.89583 1.20617 1.05852 1.05286 0.84587 1.23167 0.94128 1.03099 0.99304 1.23213 1.00591 0.93796 0.98323 0.90870 0.83669 0.81945 0.79923 0.80242 0.87161 0.88151 0.87194 0.85730 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.53 13.67 21.62 0.30 -51.24 16 2 C 0.00 0.21 5.49 84.87 0.47 0.67 16 3 Si 1.02 43.23 29.55 68.60 2.03 45.26 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.42 -25.59 9.64 67.94 0.66 -24.94 16 8 H 0.08 4.79 6.86 -2.91 -0.02 4.77 16 9 O -0.23 -13.36 9.75 14.82 0.14 -13.22 16 10 C 0.38 19.03 7.97 71.24 0.57 19.60 16 11 O -0.57 -33.03 15.67 20.75 0.33 -32.71 16 12 C 0.16 5.64 6.77 85.63 0.58 6.22 16 13 N -0.35 -12.77 3.10 -338.38 -1.05 -13.82 16 14 N -0.29 -11.00 12.51 -47.38 -0.59 -11.59 16 15 C -0.01 -0.38 6.84 43.11 0.30 -0.09 16 16 C 0.36 8.46 5.84 71.24 0.42 8.88 16 17 F -0.21 -6.32 17.27 44.97 0.78 -5.54 16 18 F -0.19 -4.63 17.06 44.97 0.77 -3.86 16 19 C -0.25 -7.01 9.43 21.99 0.21 -6.81 16 20 C 0.14 4.18 6.62 41.41 0.27 4.45 16 21 C -0.14 -3.53 5.97 -11.53 -0.07 -3.60 16 22 C -0.16 -3.20 10.04 30.60 0.31 -2.89 16 23 C -0.12 -1.87 10.05 30.60 0.31 -1.56 16 24 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.15 4.66 8.14 -2.39 -0.02 4.64 16 26 H 0.16 4.50 7.24 -2.39 -0.02 4.48 16 27 H 0.18 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 29 H 0.11 2.84 7.26 -2.39 -0.02 2.83 16 30 H 0.10 2.04 7.93 -2.39 -0.02 2.02 16 31 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.12 1.48 7.96 -2.39 -0.02 1.46 16 Total: -1.00 -80.82 310.74 7.86 -72.96 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.16 Total: 13.81 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 4.01 Total: -0.06 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -1.35 Total: -76.65 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: 0.47 Total: -45.92 kcal Atomic # 9 Polarization: -10.95 SS G_CDS: 1.54 Total: -9.40 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -80.82 7.86 -72.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873435560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.803 kcal (2) G-P(sol) polarization free energy of solvation -80.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds