Wall clock time and date at job start Tue Mar 31 2020 06:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30852 * 125.77844 * 2 1 4 4 N 1.40076 * 108.40984 * 179.81354 * 3 2 1 5 5 C 1.46503 * 126.09432 * 180.25382 * 4 3 2 6 6 C 1.35858 * 107.81727 * 0.36565 * 4 3 2 7 7 N 1.39579 * 126.26545 * 179.90052 * 6 4 3 8 8 C 1.34774 * 120.00218 * 330.74360 * 7 6 4 9 9 O 1.21600 * 119.99966 * 353.75642 * 8 7 6 10 10 N 1.34781 * 120.00295 * 173.75742 * 8 7 6 11 11 C 1.46498 * 119.99723 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47680 * 35.00401 * 11 10 8 13 13 C 1.52996 * 109.47576 * 274.99714 * 11 10 8 14 14 C 1.50703 * 109.46771 * 155.00168 * 11 10 8 15 15 H 1.08006 * 120.00226 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00194 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00001 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 120.00244 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47033 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47021 * 119.99744 * 18 16 14 21 21 H 1.48497 * 109.47255 * 239.99877 * 18 16 14 22 22 C 1.36149 * 107.47269 * 359.64122 * 6 4 3 23 23 Cl 1.73598 * 126.07398 * 180.24398 * 22 6 4 24 24 H 1.08995 * 109.46844 * 269.95643 * 1 2 3 25 25 H 1.09001 * 109.46847 * 29.95369 * 1 2 3 26 26 H 1.08995 * 109.47207 * 149.95092 * 1 2 3 27 27 H 1.09001 * 109.46770 * 271.92244 * 5 4 3 28 28 H 1.08999 * 109.46869 * 31.92159 * 5 4 3 29 29 H 1.08998 * 109.47453 * 151.92380 * 5 4 3 30 30 H 0.96999 * 120.00205 * 150.73517 * 7 6 4 31 31 H 0.97002 * 119.99824 * 0.02562 * 10 8 7 32 32 H 1.08994 * 109.47177 * 300.00996 * 13 11 10 33 33 H 1.08992 * 109.47357 * 180.02562 * 13 11 10 34 34 H 1.09014 * 109.46543 * 60.00568 * 13 11 10 35 35 H 0.97003 * 120.00171 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2721 1.0616 0.0000 4 7 3.6090 0.6434 0.0043 5 6 4.7861 1.5156 0.0110 6 6 3.6197 -0.7151 -0.0013 7 7 4.7515 -1.5319 -0.0015 8 6 5.8955 -1.0982 -0.5669 9 8 5.9119 -0.0456 -1.1756 10 7 7.0213 -1.8311 -0.4578 11 6 8.2646 -1.3598 -1.0729 12 1 8.3112 -0.2726 -1.0112 13 6 8.3022 -1.7894 -2.5408 14 6 9.4422 -1.9551 -0.3450 15 1 9.2807 -2.6185 0.4918 16 6 10.7259 -1.6529 -0.7472 17 7 10.9226 -0.8455 -1.7665 18 14 12.1856 -2.3914 0.1546 19 1 11.6989 -3.2606 1.2559 20 1 12.9958 -3.1987 -0.7926 21 1 13.0225 -1.3016 0.7177 22 6 2.3242 -1.1341 -0.0008 23 17 1.7834 -2.7837 -0.0008 24 1 -0.3633 -0.0008 1.0276 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3633 -0.8895 -0.5146 27 1 5.0615 1.7620 -1.0144 28 1 4.5565 2.4315 0.5556 29 1 5.6159 1.0023 0.4968 30 1 4.7148 -2.4116 0.4053 31 1 7.0081 -2.6709 0.0274 32 1 8.2556 -2.8766 -2.6025 33 1 9.2274 -1.4391 -2.9983 34 1 7.4504 -1.3587 -3.0674 35 1 11.8258 -0.6325 -2.0493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888644850.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:23 Heat of formation + Delta-G solvation = 30.244189 kcal Electronic energy + Delta-G solvation = -20555.680382 eV Core-core repulsion = 17230.204334 eV Total energy + Delta-G solvation = -3325.476048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.77543 -40.93733 -37.44194 -37.13861 -36.02832 -34.82211 -34.11550 -31.27161 -30.51197 -29.53353 -27.34214 -26.41584 -24.22841 -22.15685 -22.03283 -20.90642 -19.70516 -18.89688 -18.05844 -17.16236 -17.14847 -16.62536 -16.56016 -15.82435 -15.43589 -14.94443 -14.50562 -14.34314 -14.23738 -13.89072 -13.67607 -13.37867 -13.23370 -12.96201 -12.90173 -12.75541 -12.56263 -12.38793 -12.28677 -12.12072 -11.88824 -11.49852 -11.17072 -11.09642 -10.62547 -10.05039 -9.74119 -9.16945 -8.18781 -6.35401 0.51507 0.83747 1.31765 1.40750 1.45098 1.47948 1.58238 1.80489 2.09290 2.41137 3.12561 3.21947 3.48604 3.85201 4.11631 4.30735 4.36190 4.67628 4.74307 4.77443 4.85081 4.90023 4.92638 5.02004 5.07973 5.32154 5.48170 5.53894 5.57150 5.74388 5.85682 6.01572 6.08141 6.52867 6.71429 7.02302 7.30873 7.47903 8.87561 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.031067 B = 0.003884 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.073053 B = 7208.144565 C = 7659.456934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.104 3.896 3 N -0.306 5.306 4 N -0.370 5.370 5 C 0.135 3.865 6 C 0.349 3.651 7 N -0.650 5.650 8 C 0.690 3.310 9 O -0.607 6.607 10 N -0.704 5.704 11 C 0.290 3.710 12 H 0.010 0.990 13 C -0.136 4.136 14 C -0.545 4.545 15 H 0.075 0.925 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 0.970 3.030 19 H -0.260 1.260 20 H -0.281 1.281 21 H -0.285 1.285 22 C -0.226 4.226 23 Cl -0.023 7.023 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.434 0.566 31 H 0.405 0.595 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.012 0.988 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.064 -3.248 5.998 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 N -0.131 5.131 4 N -0.155 5.155 5 C -0.005 4.005 6 C 0.123 3.877 7 N -0.305 5.305 8 C 0.390 3.610 9 O -0.487 6.487 10 N -0.356 5.356 11 C 0.187 3.813 12 H 0.028 0.972 13 C -0.195 4.195 14 C -0.583 4.583 15 H 0.093 0.907 16 C -0.182 4.182 17 N -0.553 5.553 18 Si 0.795 3.205 19 H -0.184 1.184 20 H -0.207 1.207 21 H -0.211 1.211 22 C -0.268 4.268 23 Cl 0.005 6.995 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.274 0.726 31 H 0.241 0.759 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.622 -1.023 5.346 17.491 hybrid contribution 1.281 -1.870 0.424 2.306 sum -15.341 -2.893 5.770 16.643 Atomic orbital electron populations 1.20398 0.82961 1.04740 1.04835 1.22626 0.98874 0.87653 0.97134 1.77461 0.85138 1.22168 1.28303 1.48592 1.06555 1.02809 1.57526 1.21958 0.81963 0.92918 1.03643 1.17451 0.87151 0.83259 0.99804 1.41950 1.07365 1.19972 1.61245 1.16225 0.80544 0.83922 0.80275 1.90980 1.85077 1.24480 1.48142 1.45496 1.07946 1.25014 1.57178 1.18327 0.78953 0.94029 0.89992 0.97244 1.21937 1.00035 0.99056 0.98445 1.21535 0.90665 1.30017 1.16125 0.90728 1.25720 1.01699 0.95166 0.95658 1.70043 1.22417 1.35839 1.27018 0.85326 0.78550 0.78079 0.78541 1.18409 1.20664 1.21074 1.19883 0.89840 0.88566 1.28528 1.98295 1.89300 1.13949 1.97999 0.88230 0.89588 0.88818 0.90741 0.89026 0.90763 0.72556 0.75916 0.94189 0.91341 0.96922 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.30 71.24 0.73 -0.42 16 2 C 0.10 2.70 7.20 43.08 0.31 3.01 16 3 N -0.31 -9.53 12.56 -47.43 -0.60 -10.12 16 4 N -0.37 -12.29 3.99 -365.83 -1.46 -13.75 16 5 C 0.14 4.43 9.24 127.77 1.18 5.61 16 6 C 0.35 10.87 7.33 131.10 0.96 11.83 16 7 N -0.65 -19.14 5.42 -321.75 -1.74 -20.88 16 8 C 0.69 25.67 7.52 179.05 1.35 27.02 16 9 O -0.61 -26.69 11.03 -4.03 -0.04 -26.73 16 10 N -0.70 -26.68 5.07 -461.40 -2.34 -29.02 16 11 C 0.29 13.98 2.56 44.25 0.11 14.09 16 12 H 0.01 0.54 7.58 -2.39 -0.02 0.53 16 13 C -0.14 -6.54 9.26 71.98 0.67 -5.88 16 14 C -0.55 -27.08 8.73 25.60 0.22 -26.86 16 15 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 16 C 0.02 0.92 5.30 84.65 0.45 1.37 16 17 N -0.91 -50.22 11.32 21.45 0.24 -49.98 16 18 Si 0.97 40.28 29.54 68.60 2.03 42.31 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 C -0.23 -6.11 6.66 22.16 0.15 -5.96 16 23 Cl -0.02 -0.50 28.99 -2.72 -0.08 -0.58 16 24 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.09 1.28 7.99 -2.39 -0.02 1.26 16 27 H 0.07 2.74 6.87 -2.39 -0.02 2.72 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.07 2.60 6.19 -2.39 -0.01 2.59 16 30 H 0.43 9.81 8.84 -92.71 -0.82 8.99 16 31 H 0.41 12.66 8.56 -92.71 -0.79 11.87 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 34 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -62.77 312.22 1.67 -61.10 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.47 Total: 23.85 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 6.13 Total: 23.81 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -5.90 Total: -123.75 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.04 Total: -26.73 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -62.77 1.67 -61.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888644850.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.340 kcal (2) G-P(sol) polarization free energy of solvation -62.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds