Wall clock time and date at job start Tue Mar 31 2020 06:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30854 * 125.77882 * 2 1 4 4 N 1.40076 * 108.41371 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.09451 * 180.02562 * 4 3 2 6 6 C 1.35853 * 107.81649 * 0.02562 * 4 3 2 7 7 N 1.39590 * 126.26593 * 179.97438 * 6 4 3 8 8 C 1.34773 * 119.99821 * 307.91053 * 7 6 4 9 9 O 1.21585 * 120.00254 * 6.10848 * 8 7 6 10 10 N 1.34780 * 119.99677 * 186.10595 * 8 7 6 11 11 C 1.46503 * 120.00079 * 0.02562 * 10 8 7 12 12 C 1.46498 * 119.99870 * 180.02562 * 10 8 7 13 13 C 1.50694 * 109.47177 * 89.99958 * 12 10 8 14 14 H 1.08005 * 120.00196 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00083 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00199 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99974 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47156 * 60.00354 * 17 15 13 19 19 H 1.48505 * 109.47176 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47288 * 300.00061 * 17 15 13 21 21 C 1.36147 * 107.47256 * 0.02562 * 6 4 3 22 22 Cl 1.73599 * 126.07212 * 179.74013 * 21 6 4 23 23 H 1.09001 * 109.46697 * 269.97071 * 1 2 3 24 24 H 1.08995 * 109.47007 * 29.97494 * 1 2 3 25 25 H 1.08998 * 109.46963 * 149.97366 * 1 2 3 26 26 H 1.08999 * 109.47434 * 275.90258 * 5 4 3 27 27 H 1.09003 * 109.46802 * 35.90514 * 5 4 3 28 28 H 1.09004 * 109.47086 * 155.90002 * 5 4 3 29 29 H 0.96998 * 119.99690 * 127.91096 * 7 6 4 30 30 H 1.08994 * 109.47065 * 89.99661 * 11 10 8 31 31 H 1.09004 * 109.46590 * 209.99950 * 11 10 8 32 32 H 1.08999 * 109.47110 * 329.99985 * 11 10 8 33 33 H 1.09003 * 109.46980 * 210.00518 * 12 10 8 34 34 H 1.09007 * 109.47309 * 329.99911 * 12 10 8 35 35 H 0.96998 * 120.00438 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2720 1.0616 0.0000 4 7 3.6089 0.6435 -0.0006 5 6 4.7860 1.5158 -0.0003 6 6 3.6196 -0.7150 -0.0015 7 7 4.7516 -1.5318 -0.0029 8 6 5.7171 -1.3439 -0.9243 9 8 5.6570 -0.3959 -1.6831 10 7 6.7492 -2.2070 -1.0044 11 6 6.8212 -3.3496 -0.0904 12 6 7.7989 -2.0025 -2.0056 13 6 8.8904 -1.1437 -1.4208 14 1 8.8104 -0.7863 -0.4047 15 6 9.9918 -0.8151 -2.1824 16 7 10.0895 -1.2506 -3.4195 17 14 11.3451 0.2488 -1.4572 18 1 11.9210 -0.4263 -0.2664 19 1 12.4092 0.4563 -2.4721 20 1 10.7809 1.5628 -1.0567 21 6 2.3243 -1.1340 -0.0021 22 17 1.7835 -2.7836 -0.0097 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 5.0148 1.8177 -1.0223 27 1 4.5824 2.4005 0.6031 28 1 5.6365 0.9781 0.4188 29 1 4.8433 -2.2346 0.6594 30 1 6.3099 -4.2034 -0.5350 31 1 7.8654 -3.6050 0.0902 32 1 6.3420 -3.0905 0.8537 33 1 8.2134 -2.9668 -2.2996 34 1 7.3759 -1.5072 -2.8797 35 1 10.8641 -1.0191 -3.9554 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888651805.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:17 Heat of formation + Delta-G solvation = 31.300685 kcal Electronic energy + Delta-G solvation = -20729.445023 eV Core-core repulsion = 17404.014788 eV Total energy + Delta-G solvation = -3325.430235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.71602 -40.97151 -37.45538 -36.88321 -36.14951 -34.83378 -34.36866 -30.92602 -30.19651 -29.36584 -27.43433 -26.41970 -25.21955 -22.41358 -21.92389 -20.49980 -19.34200 -18.67319 -18.54087 -17.24603 -16.87210 -16.59003 -16.46265 -15.82585 -15.43316 -14.88433 -14.55699 -14.44921 -14.28880 -13.92495 -13.65613 -13.52191 -13.32895 -13.22839 -13.14350 -12.84144 -12.58632 -12.54490 -12.42040 -12.19909 -11.88521 -11.73118 -11.40359 -11.13301 -10.63102 -10.09523 -9.53932 -9.29155 -8.21559 -6.36165 0.42722 0.82929 1.32884 1.38977 1.40788 1.42073 1.49564 1.78454 2.09939 2.39486 2.89527 3.09275 3.43171 3.86660 4.09284 4.25121 4.27259 4.29688 4.62621 4.63059 4.71487 4.80637 4.84410 4.91194 4.95975 5.00346 5.19848 5.46189 5.49533 5.66288 5.82334 5.88891 6.04420 6.45784 6.71819 6.87221 7.28982 7.46232 8.85238 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.004529 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.563480 B = 6180.291146 C = 6865.715020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.098 3.902 3 N -0.299 5.299 4 N -0.365 5.365 5 C 0.121 3.879 6 C 0.339 3.661 7 N -0.658 5.658 8 C 0.699 3.301 9 O -0.612 6.612 10 N -0.611 5.611 11 C 0.076 3.924 12 C 0.277 3.723 13 C -0.541 4.541 14 H 0.056 0.944 15 C 0.011 3.989 16 N -0.928 5.928 17 Si 0.965 3.035 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.277 1.277 21 C -0.207 4.207 22 Cl -0.022 7.022 23 H 0.102 0.898 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.429 0.571 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.001 0.999 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 -2.853 11.770 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 N -0.124 5.124 4 N -0.150 5.150 5 C -0.020 4.020 6 C 0.115 3.885 7 N -0.317 5.317 8 C 0.401 3.599 9 O -0.491 6.491 10 N -0.346 5.346 11 C -0.066 4.066 12 C 0.155 3.845 13 C -0.580 4.580 14 H 0.074 0.926 15 C -0.188 4.188 16 N -0.567 5.567 17 Si 0.790 3.210 18 H -0.185 1.185 19 H -0.207 1.207 20 H -0.202 1.202 21 C -0.249 4.249 22 Cl 0.006 6.994 23 H 0.120 0.880 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.272 0.728 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.049 0.951 34 H 0.019 0.981 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.452 -1.033 11.039 19.019 hybrid contribution 1.306 -0.784 0.111 1.527 sum -14.147 -1.817 11.150 18.104 Atomic orbital electron populations 1.20407 0.82868 1.04724 1.04957 1.22655 0.98943 0.87628 0.97575 1.77433 0.85270 1.22276 1.27415 1.48737 1.06455 1.03553 1.56218 1.21837 0.82536 0.94021 1.03627 1.17369 0.87164 0.82839 1.01139 1.41975 1.18207 1.36650 1.34873 1.15999 0.80007 0.82972 0.80948 1.90910 1.78881 1.32935 1.46378 1.47338 1.22601 1.26917 1.37711 1.21951 1.04332 0.87770 0.92586 1.18752 0.83584 0.96070 0.86058 1.21650 1.04420 1.32443 0.99488 0.92562 1.25800 1.00739 0.97236 0.95058 1.70036 1.30898 1.46526 1.09276 0.85507 0.78177 0.78941 0.78406 1.18542 1.20706 1.20235 1.20147 0.90459 0.88604 1.25676 1.98296 1.89232 1.13979 1.97848 0.87979 0.89583 0.88924 0.91616 0.87183 0.90553 0.72758 0.90855 0.90245 0.89700 0.95117 0.98127 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.30 71.24 0.73 -0.46 16 2 C 0.10 2.62 7.20 43.08 0.31 2.93 16 3 N -0.30 -9.42 12.56 -47.43 -0.60 -10.01 16 4 N -0.37 -12.29 3.96 -365.82 -1.45 -13.74 16 5 C 0.12 3.86 9.63 127.77 1.23 5.09 16 6 C 0.34 10.95 6.89 131.10 0.90 11.85 16 7 N -0.66 -20.56 5.18 -321.77 -1.67 -22.22 16 8 C 0.70 28.59 7.50 179.05 1.34 29.93 16 9 O -0.61 -30.66 13.26 -3.98 -0.05 -30.71 16 10 N -0.61 -24.71 2.86 -869.31 -2.48 -27.19 16 11 C 0.08 2.07 10.26 127.77 1.31 3.38 16 12 C 0.28 14.29 5.16 85.63 0.44 14.73 16 13 C -0.54 -29.71 9.39 25.60 0.24 -29.47 16 14 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 15 C 0.01 0.61 5.46 84.66 0.46 1.07 16 16 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 17 Si 0.97 43.36 29.54 68.60 2.03 45.38 16 18 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 C -0.21 -5.84 6.66 22.16 0.15 -5.70 16 22 Cl -0.02 -0.49 28.98 -2.72 -0.08 -0.57 16 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 25 H 0.09 1.34 7.99 -2.39 -0.02 1.32 16 26 H 0.07 2.42 7.52 -2.39 -0.02 2.40 16 27 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.08 2.55 7.29 -2.38 -0.02 2.53 16 29 H 0.43 10.25 6.52 -92.71 -0.60 9.64 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 32 H 0.08 1.71 6.28 -2.39 -0.01 1.69 16 33 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 34 H 0.00 0.04 7.42 -2.38 -0.02 0.02 16 35 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -71.87 317.25 3.62 -68.24 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.52 Total: 11.85 kcal Atomic # 6 Polarization: 26.25 SS G_CDS: 7.12 Total: 33.37 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -5.91 Total: -127.56 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -71.87 3.62 -68.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888651805.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.543 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds