Wall clock time and date at job start Tue Mar 31 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48497 * 109.46778 * 273.92285 * 3 2 1 5 5 H 1.48500 * 109.46956 * 33.92778 * 3 2 1 6 6 H 1.48503 * 109.46771 * 153.92561 * 3 2 1 7 7 C 1.38897 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00193 * 343.33206 * 7 2 1 9 9 N 1.37213 * 120.00039 * 163.34082 * 7 2 1 10 10 C 1.34780 * 119.99935 * 125.38735 * 9 7 2 11 11 O 1.21271 * 119.99586 * 185.09440 * 10 9 7 12 12 C 1.50694 * 120.00223 * 5.09826 * 10 9 7 13 13 O 1.42899 * 109.47309 * 183.66590 * 12 10 9 14 14 C 1.42895 * 114.00394 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47620 * 180.02562 * 14 13 12 16 16 F 1.39905 * 109.46801 * 300.00389 * 15 14 13 17 17 F 1.39902 * 109.46905 * 59.99924 * 15 14 13 18 18 C 1.39423 * 120.00037 * 305.39078 * 9 7 2 19 19 C 1.39070 * 119.69730 * 4.99977 * 18 9 7 20 20 C 1.38371 * 119.10167 * 180.02562 * 19 18 9 21 21 C 1.38826 * 118.49147 * 0.02562 * 20 19 18 22 22 C 1.38147 * 119.31197 * 0.24831 * 21 20 19 23 23 N 1.31878 * 120.84737 * 359.48194 * 22 21 20 24 24 H 0.96995 * 119.99858 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47409 * 303.66953 * 12 10 9 26 26 H 1.09002 * 109.47177 * 63.66987 * 12 10 9 27 27 H 1.09001 * 109.47200 * 300.00645 * 14 13 12 28 28 H 1.09007 * 109.47016 * 60.00265 * 14 13 12 29 29 H 1.08993 * 109.47299 * 180.02562 * 15 14 13 30 30 H 1.08002 * 120.44757 * 0.04480 * 19 18 9 31 31 H 1.08001 * 120.75477 * 180.02562 * 20 19 18 32 32 H 1.08007 * 120.34568 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.57352 * 179.74987 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4127 2.0942 -1.3968 5 1 1.4896 2.6272 0.7815 6 1 3.5848 1.4175 0.6154 7 6 2.0085 -1.2029 0.0005 8 1 1.5026 -2.1184 0.2692 9 7 3.3375 -1.2281 -0.3401 10 6 4.2386 -1.7725 0.5014 11 8 5.4222 -1.7126 0.2437 12 6 3.7756 -2.4556 1.7622 13 8 4.9113 -2.8720 2.5231 14 6 4.5810 -3.5350 3.7450 15 6 5.8664 -3.9332 4.4730 16 9 6.6138 -4.7944 3.6623 17 9 6.6180 -2.7869 4.7528 18 6 3.7556 -0.6905 -1.5567 19 6 2.8383 -0.0377 -2.3731 20 6 3.2665 0.4907 -3.5781 21 6 4.6026 0.3471 -3.9267 22 6 5.4575 -0.3185 -3.0696 23 7 5.0218 -0.8074 -1.9248 24 1 -0.4850 0.8400 -0.0004 25 1 3.1772 -1.7618 2.3527 26 1 3.1727 -3.3261 1.5035 27 1 3.9991 -2.8639 4.3768 28 1 3.9950 -4.4280 3.5270 29 1 5.6145 -4.4393 5.4048 30 1 1.8058 0.0558 -2.0705 31 1 2.5770 1.0033 -4.2325 32 1 4.9690 0.7476 -4.8605 33 1 6.4968 -0.4362 -3.3385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892473151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:28 Heat of formation + Delta-G solvation = -113.507784 kcal Electronic energy + Delta-G solvation = -22685.924658 eV Core-core repulsion = 18770.125625 eV Total energy + Delta-G solvation = -3915.799033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.79281 -46.83456 -40.16059 -38.46901 -37.12024 -35.17928 -32.49407 -31.54098 -30.52575 -29.62004 -26.92918 -25.39229 -22.97728 -22.69191 -22.12157 -19.54948 -18.51208 -17.62128 -17.37321 -16.98149 -16.13257 -15.94341 -15.63733 -15.57933 -15.33997 -14.67662 -14.36836 -14.08585 -13.69498 -13.64874 -13.22184 -13.19171 -12.92100 -12.82914 -12.39917 -12.33805 -11.87332 -11.65589 -11.53885 -11.17265 -10.85557 -10.62978 -10.29795 -9.70768 -9.55573 -9.29654 -9.21474 -8.75169 -8.20563 -7.29342 -6.74495 -4.63793 1.83081 2.03215 3.00347 3.12012 3.19402 3.24103 3.55906 3.83725 3.95223 4.15958 4.28407 4.52120 4.52363 4.77721 5.05894 5.22783 5.29337 5.43624 5.43782 5.58159 5.75049 5.75683 5.88891 5.93154 6.07744 6.51049 6.68554 6.89085 7.08685 7.15379 7.44459 7.84694 7.98475 8.53031 8.72430 9.03858 9.44900 10.29522 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019091 B = 0.005494 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.341335 B = 5095.617115 C = 6003.670577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.088 3.912 3 Si 0.857 3.143 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.375 4.375 8 H 0.112 0.888 9 N -0.409 5.409 10 C 0.499 3.501 11 O -0.491 6.491 12 C 0.063 3.937 13 O -0.360 6.360 14 C 0.008 3.992 15 C 0.273 3.727 16 F -0.200 7.200 17 F -0.200 7.200 18 C 0.360 3.640 19 C -0.200 4.200 20 C -0.062 4.062 21 C -0.232 4.232 22 C 0.118 3.882 23 N -0.490 5.490 24 H 0.281 0.719 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.153 0.847 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -3.416 3.877 5.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.123 4.123 3 Si 0.681 3.319 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.501 4.501 8 H 0.129 0.871 9 N -0.125 5.125 10 C 0.287 3.713 11 O -0.363 6.363 12 C -0.016 4.016 13 O -0.278 6.278 14 C -0.071 4.071 15 C 0.219 3.781 16 F -0.181 7.181 17 F -0.181 7.181 18 C 0.131 3.869 19 C -0.224 4.224 20 C -0.088 4.088 21 C -0.255 4.255 22 C -0.041 4.041 23 N -0.206 5.206 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.170 0.830 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.175 -3.743 4.376 7.113 hybrid contribution -0.733 1.350 -0.525 1.624 sum 3.442 -2.393 3.851 5.692 Atomic orbital electron populations 1.69724 1.06136 1.28941 1.42921 1.25473 0.95141 0.98796 0.92902 0.87239 0.81285 0.83121 0.80227 1.17761 1.20511 1.18489 1.19003 0.82358 0.96564 1.52185 0.87097 1.41402 1.08267 1.51564 1.11218 1.20435 0.85916 0.80605 0.84353 1.90715 1.16202 1.55853 1.73561 1.22130 0.87596 0.99626 0.92286 1.88026 1.30897 1.76841 1.32003 1.23658 0.95561 0.99162 0.88701 1.22006 0.85072 0.77980 0.93039 1.93011 1.79012 1.70130 1.75994 1.93012 1.78786 1.52094 1.94241 1.19180 0.88767 0.91894 0.87066 1.21919 1.02437 1.02212 0.95792 1.21266 0.95572 0.96575 0.95386 1.21809 0.94960 1.06546 1.02146 1.22495 0.99414 0.93177 0.89012 1.67701 1.14660 1.21274 1.16935 0.90805 0.89275 0.90171 0.90145 0.90226 0.86111 0.83006 0.85670 0.85972 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.27 13.96 55.49 0.77 -20.50 16 2 C 0.09 2.17 3.80 -17.49 -0.07 2.11 16 3 Si 0.86 20.01 24.80 -169.99 -4.22 15.79 16 4 H -0.25 -5.71 6.15 56.52 0.35 -5.36 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.37 -9.22 8.05 -14.90 -0.12 -9.34 16 8 H 0.11 2.75 7.97 -52.49 -0.42 2.33 16 9 N -0.41 -10.16 2.10 -60.71 -0.13 -10.28 16 10 C 0.50 12.20 7.66 -10.99 -0.08 12.12 16 11 O -0.49 -13.42 14.80 -14.32 -0.21 -13.63 16 12 C 0.06 1.21 5.25 36.00 0.19 1.40 16 13 O -0.36 -6.85 9.77 -55.12 -0.54 -7.39 16 14 C 0.01 0.09 6.16 37.16 0.23 0.32 16 15 C 0.27 3.22 5.63 37.16 0.21 3.43 16 16 F -0.20 -2.98 17.28 2.25 0.04 -2.94 16 17 F -0.20 -3.01 17.28 2.25 0.04 -2.97 16 18 C 0.36 8.86 6.05 -154.65 -0.94 7.93 16 19 C -0.20 -4.49 6.07 -39.22 -0.24 -4.73 16 20 C -0.06 -1.16 10.16 -39.31 -0.40 -1.56 16 21 C -0.23 -4.03 10.11 -39.40 -0.40 -4.42 16 22 C 0.12 2.30 11.18 -17.56 -0.20 2.11 16 23 N -0.49 -11.84 7.92 -12.34 -0.10 -11.94 16 24 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 25 H 0.09 1.63 7.92 -51.93 -0.41 1.21 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.15 3.55 4.81 -52.49 -0.25 3.30 16 31 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 32 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.15 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -32.78 294.14 -4.95 -37.73 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.23 Total: 2.35 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -1.81 Total: 9.36 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.55 Total: -42.73 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.75 Total: -21.02 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.08 Total: -5.91 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.22 Total: 15.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.78 -4.95 -37.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.783 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds