Wall clock time and date at job start Tue Mar 31 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48497 * 109.46778 * 273.92285 * 3 2 1 5 5 H 1.48500 * 109.46956 * 33.92778 * 3 2 1 6 6 H 1.48503 * 109.46771 * 153.92561 * 3 2 1 7 7 C 1.38897 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00193 * 343.33206 * 7 2 1 9 9 N 1.37213 * 120.00039 * 163.34082 * 7 2 1 10 10 C 1.34780 * 119.99935 * 125.38735 * 9 7 2 11 11 O 1.21271 * 119.99586 * 185.09440 * 10 9 7 12 12 C 1.50694 * 120.00223 * 5.09826 * 10 9 7 13 13 O 1.42899 * 109.47309 * 183.66590 * 12 10 9 14 14 C 1.42895 * 114.00394 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47620 * 180.02562 * 14 13 12 16 16 F 1.39905 * 109.46801 * 300.00389 * 15 14 13 17 17 F 1.39902 * 109.46905 * 59.99924 * 15 14 13 18 18 C 1.39423 * 120.00037 * 305.39078 * 9 7 2 19 19 C 1.39070 * 119.69730 * 4.99977 * 18 9 7 20 20 C 1.38371 * 119.10167 * 180.02562 * 19 18 9 21 21 C 1.38826 * 118.49147 * 0.02562 * 20 19 18 22 22 C 1.38147 * 119.31197 * 0.24831 * 21 20 19 23 23 N 1.31878 * 120.84737 * 359.48194 * 22 21 20 24 24 H 0.96995 * 119.99858 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47409 * 303.66953 * 12 10 9 26 26 H 1.09002 * 109.47177 * 63.66987 * 12 10 9 27 27 H 1.09001 * 109.47200 * 300.00645 * 14 13 12 28 28 H 1.09007 * 109.47016 * 60.00265 * 14 13 12 29 29 H 1.08993 * 109.47299 * 180.02562 * 15 14 13 30 30 H 1.08002 * 120.44757 * 0.04480 * 19 18 9 31 31 H 1.08001 * 120.75477 * 180.02562 * 20 19 18 32 32 H 1.08007 * 120.34568 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.57352 * 179.74987 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4127 2.0942 -1.3968 5 1 1.4896 2.6272 0.7815 6 1 3.5848 1.4175 0.6154 7 6 2.0085 -1.2029 0.0005 8 1 1.5026 -2.1184 0.2692 9 7 3.3375 -1.2281 -0.3401 10 6 4.2386 -1.7725 0.5014 11 8 5.4222 -1.7126 0.2437 12 6 3.7756 -2.4556 1.7622 13 8 4.9113 -2.8720 2.5231 14 6 4.5810 -3.5350 3.7450 15 6 5.8664 -3.9332 4.4730 16 9 6.6138 -4.7944 3.6623 17 9 6.6180 -2.7869 4.7528 18 6 3.7556 -0.6905 -1.5567 19 6 2.8383 -0.0377 -2.3731 20 6 3.2665 0.4907 -3.5781 21 6 4.6026 0.3471 -3.9267 22 6 5.4575 -0.3185 -3.0696 23 7 5.0218 -0.8074 -1.9248 24 1 -0.4850 0.8400 -0.0004 25 1 3.1772 -1.7618 2.3527 26 1 3.1727 -3.3261 1.5035 27 1 3.9991 -2.8639 4.3768 28 1 3.9950 -4.4280 3.5270 29 1 5.6145 -4.4393 5.4048 30 1 1.8058 0.0558 -2.0705 31 1 2.5770 1.0033 -4.2325 32 1 4.9690 0.7476 -4.8605 33 1 6.4968 -0.4362 -3.3385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892473151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:27 Heat of formation + Delta-G solvation = -134.995281 kcal Electronic energy + Delta-G solvation = -22686.856425 eV Core-core repulsion = 18770.125625 eV Total energy + Delta-G solvation = -3916.730801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.82219 -47.89397 -41.86552 -40.06864 -38.55572 -37.01995 -34.33791 -33.18505 -31.86777 -30.97368 -28.42361 -27.22114 -24.44779 -23.84117 -23.69483 -21.32518 -20.21177 -18.74907 -18.42572 -18.38806 -17.87352 -17.28091 -17.10955 -17.05327 -16.73850 -16.28081 -15.99526 -15.73522 -15.33305 -14.89729 -14.82085 -14.47769 -14.44587 -14.27199 -13.89399 -13.74743 -13.38178 -13.09823 -13.05291 -12.88468 -12.37415 -12.16607 -11.83251 -11.50714 -11.01648 -10.96750 -10.83812 -10.48738 -9.90021 -9.03181 -8.64165 -6.54909 0.22067 0.46741 1.15156 1.24055 1.34007 1.77144 1.82732 2.08120 2.57865 2.79158 3.04801 3.12491 3.40257 3.61385 3.67646 3.96997 4.05474 4.16547 4.25713 4.29252 4.35560 4.38750 4.39447 4.54722 4.55792 4.95130 5.15654 5.32216 5.42945 5.78924 5.87296 5.98357 6.19073 6.72569 6.94595 7.25238 7.67960 8.42351 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019091 B = 0.005494 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.341335 B = 5095.617115 C = 6003.670577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.894 3.106 4 H -0.240 1.240 5 H -0.268 1.268 6 H -0.299 1.299 7 C -0.372 4.372 8 H 0.103 0.897 9 N -0.420 5.420 10 C 0.482 3.518 11 O -0.535 6.535 12 C 0.075 3.925 13 O -0.397 6.397 14 C -0.006 4.006 15 C 0.263 3.737 16 F -0.222 7.222 17 F -0.223 7.223 18 C 0.324 3.676 19 C -0.220 4.220 20 C -0.059 4.059 21 C -0.205 4.205 22 C 0.103 3.897 23 N -0.530 5.530 24 H 0.288 0.712 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.187 0.813 30 H 0.138 0.862 31 H 0.165 0.835 32 H 0.175 0.825 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -2.922 3.031 4.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.164 1.164 5 H -0.193 1.193 6 H -0.225 1.225 7 C -0.498 4.498 8 H 0.120 0.880 9 N -0.136 5.136 10 C 0.272 3.728 11 O -0.410 6.410 12 C -0.003 4.003 13 O -0.316 6.316 14 C -0.083 4.083 15 C 0.210 3.790 16 F -0.203 7.203 17 F -0.205 7.205 18 C 0.096 3.904 19 C -0.243 4.243 20 C -0.085 4.085 21 C -0.226 4.226 22 C -0.055 4.055 23 N -0.246 5.246 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.204 0.796 30 H 0.156 0.844 31 H 0.182 0.818 32 H 0.192 0.808 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.835 -3.238 3.512 6.126 hybrid contribution -0.558 1.176 -0.372 1.354 sum 3.276 -2.062 3.139 4.984 Atomic orbital electron populations 1.69729 1.06555 1.29776 1.43957 1.25658 0.95300 0.99797 0.92713 0.86716 0.78640 0.82098 0.80589 1.16387 1.19310 1.22503 1.18925 0.82463 0.96377 1.52053 0.87952 1.41555 1.08187 1.51991 1.11911 1.21361 0.85551 0.80353 0.85570 1.90656 1.17693 1.57804 1.74861 1.21980 0.87735 1.00103 0.90514 1.87974 1.31431 1.77794 1.34425 1.24151 0.96955 1.00458 0.86753 1.22810 0.83783 0.77346 0.95026 1.92964 1.79637 1.70690 1.77043 1.92962 1.79457 1.53669 1.94376 1.19447 0.89638 0.93562 0.87783 1.21952 1.01474 1.03484 0.97399 1.21801 0.97074 0.95391 0.94260 1.22324 0.93760 1.03604 1.02932 1.23188 1.01386 0.92819 0.88123 1.67645 1.14938 1.22791 1.19259 0.90085 0.88446 0.88168 0.87696 0.87362 0.79612 0.84444 0.81769 0.80779 0.80573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.41 13.96 21.65 0.30 -43.11 16 2 C 0.07 3.71 3.80 84.91 0.32 4.03 16 3 Si 0.89 41.39 24.80 68.60 1.70 43.09 16 4 H -0.24 -10.44 6.15 99.48 0.61 -9.82 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 7 C -0.37 -18.65 8.05 84.01 0.68 -17.98 16 8 H 0.10 5.19 7.97 -2.91 -0.02 5.17 16 9 N -0.42 -21.45 2.10 -464.38 -0.97 -22.43 16 10 C 0.48 24.43 7.66 87.65 0.67 25.10 16 11 O -0.53 -30.52 14.80 16.01 0.24 -30.28 16 12 C 0.08 2.97 5.25 71.23 0.37 3.35 16 13 O -0.40 -15.29 9.77 -129.97 -1.27 -16.56 16 14 C -0.01 -0.15 6.16 71.98 0.44 0.29 16 15 C 0.26 5.78 5.63 71.98 0.41 6.19 16 16 F -0.22 -6.49 17.28 44.97 0.78 -5.71 16 17 F -0.22 -6.64 17.28 44.97 0.78 -5.86 16 18 C 0.32 16.12 6.05 132.91 0.80 16.92 16 19 C -0.22 -9.69 6.07 22.50 0.14 -9.55 16 20 C -0.06 -2.04 10.16 22.44 0.23 -1.81 16 21 C -0.21 -6.26 10.11 22.39 0.23 -6.03 16 22 C 0.10 3.82 11.18 84.66 0.95 4.77 16 23 N -0.53 -25.81 7.92 -192.96 -1.53 -27.34 16 24 H 0.29 13.37 8.31 -92.71 -0.77 12.60 16 25 H 0.10 3.60 7.92 -2.39 -0.02 3.58 16 26 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 27 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.19 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.14 6.40 4.81 -2.91 -0.01 6.39 16 31 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.18 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -75.37 294.14 6.31 -69.07 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.05 Total: 13.84 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: 5.23 Total: 25.28 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -2.20 Total: -92.87 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -1.03 Total: -46.84 kcal Atomic # 9 Polarization: -13.13 SS G_CDS: 1.55 Total: -11.57 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.70 Total: 43.09 kcal Total: -75.37 6.31 -69.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.929 kcal (2) G-P(sol) polarization free energy of solvation -75.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds