Wall clock time and date at job start Tue Mar 31 2020 05:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00139 * 2 1 4 4 C 1.52994 * 109.47421 * 180.02562 * 3 2 1 5 5 S 1.81403 * 109.47176 * 180.02562 * 4 3 2 6 6 O 1.42092 * 110.54430 * 68.37604 * 5 4 3 7 7 O 1.42103 * 110.54137 * 291.62303 * 5 4 3 8 8 N 1.65607 * 104.44886 * 180.02562 * 5 4 3 9 9 C 1.36913 * 119.99414 * 263.08487 * 8 5 4 10 10 H 1.08000 * 119.99992 * 49.80215 * 9 8 5 11 11 C 1.38811 * 119.99462 * 229.79789 * 9 8 5 12 12 N 1.31562 * 120.00363 * 17.70357 * 11 9 8 13 13 Si 1.86804 * 119.99873 * 197.70171 * 11 9 8 14 14 H 1.48501 * 109.47164 * 60.00228 * 13 11 9 15 15 H 1.48498 * 109.47171 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47176 * 300.00329 * 13 11 9 17 17 C 1.38834 * 119.99965 * 83.08429 * 8 5 4 18 18 C 1.39228 * 119.70984 * 180.02562 * 17 8 5 19 19 C 1.38308 * 119.09109 * 180.02562 * 18 17 8 20 20 C 1.38887 * 118.50535 * 359.97438 * 19 18 17 21 21 C 1.38123 * 119.34075 * 0.25310 * 20 19 18 22 22 N 1.31896 * 120.86163 * 359.47245 * 21 20 19 23 23 H 1.09004 * 109.47204 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46649 * 299.99302 * 1 2 3 25 25 H 1.08996 * 109.47800 * 59.99635 * 1 2 3 26 26 H 1.09007 * 109.46628 * 60.00197 * 3 2 1 27 27 H 1.09002 * 109.47466 * 300.00736 * 3 2 1 28 28 H 1.08996 * 109.46760 * 60.00303 * 4 3 2 29 29 H 1.09002 * 109.47204 * 300.00655 * 4 3 2 30 30 H 0.96998 * 120.00066 * 179.97438 * 12 11 9 31 31 H 1.07998 * 120.45315 * 0.03828 * 18 17 8 32 32 H 1.07994 * 120.74421 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.33110 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.56882 * 179.74868 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2732 2.8419 0.0001 6 8 4.0285 3.4961 1.2375 7 8 4.0276 3.4976 -1.2364 8 7 5.9063 2.5671 -0.0014 9 6 6.6059 2.5934 1.1752 10 1 6.2549 2.0266 2.0249 11 6 7.7663 3.3485 1.2759 12 7 8.0133 4.2956 0.3968 13 14 8.9774 3.0197 2.6597 14 1 9.4666 1.6207 2.5674 15 1 10.1255 3.9546 2.5452 16 1 8.3026 3.2229 3.9668 17 6 6.5659 2.3102 -1.1957 18 6 7.9389 2.0795 -1.1899 19 6 8.5832 1.8253 -2.3871 20 6 7.8308 1.8096 -3.5544 21 6 6.4725 2.0515 -3.4874 22 7 5.8833 2.2860 -2.3310 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8463 0.8901 27 1 1.6886 1.8465 -0.8899 28 1 3.8566 0.6440 -0.8909 29 1 3.8574 0.6435 0.8891 30 1 8.8240 4.8234 0.4674 31 1 8.4933 2.0985 -0.2632 32 1 9.6472 1.6423 -2.4135 33 1 8.3037 1.6146 -4.5056 34 1 5.8846 2.0442 -4.3933 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903169905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:53 Heat of formation + Delta-G solvation = -56.073833 kcal Electronic energy + Delta-G solvation = -21301.265501 eV Core-core repulsion = 17941.797378 eV Total energy + Delta-G solvation = -3359.468123 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.27559 -37.87640 -36.05265 -35.62626 -34.80772 -32.30879 -31.58157 -31.03567 -28.94473 -26.51792 -25.15355 -23.19290 -22.45714 -21.84713 -18.59488 -18.15430 -17.30448 -16.31840 -16.16109 -15.72834 -15.34421 -15.08538 -14.76962 -14.60960 -14.48010 -13.90530 -13.47856 -13.29827 -13.13160 -12.25627 -12.09861 -12.00881 -11.60846 -11.53855 -11.41282 -11.30776 -10.99753 -10.97047 -10.82833 -10.65908 -10.51759 -10.13480 -9.70945 -9.65296 -8.88596 -8.85235 -8.34046 -7.15570 -6.53730 -4.48182 1.10587 2.28705 2.32791 3.07786 3.12636 3.14058 3.53991 3.87192 4.09322 4.56563 4.69635 4.86998 4.91200 5.13512 5.25595 5.27749 5.32749 5.33657 5.41647 5.57081 5.66324 5.89628 5.98555 6.04507 6.10288 6.30319 6.72375 6.84881 7.09504 7.17020 7.20293 7.37139 7.73458 8.23857 8.47854 8.83333 9.20093 10.41588 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.007371 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.014468 B = 3797.587304 C = 4887.880956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.079 3.921 4 C -0.636 4.636 5 S 2.570 3.430 6 O -0.952 6.952 7 O -0.942 6.942 8 N -0.752 5.752 9 C -0.327 4.327 10 H 0.104 0.896 11 C 0.055 3.945 12 N -0.826 5.826 13 Si 0.918 3.082 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.264 1.264 17 C 0.399 3.601 18 C -0.155 4.155 19 C -0.070 4.070 20 C -0.243 4.243 21 C 0.124 3.876 22 N -0.533 5.533 23 H 0.086 0.914 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.278 0.722 31 H 0.140 0.860 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -7.014 -2.210 8.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.303 6.303 3 C 0.001 3.999 4 C -0.760 4.760 5 S 2.668 3.332 6 O -0.942 6.942 7 O -0.931 6.931 8 N -0.565 5.565 9 C -0.462 4.462 10 H 0.122 0.878 11 C -0.158 4.158 12 N -0.458 5.458 13 Si 0.742 3.258 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.189 1.189 17 C 0.165 3.835 18 C -0.181 4.181 19 C -0.096 4.096 20 C -0.266 4.266 21 C -0.034 4.034 22 N -0.250 5.250 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.088 0.912 31 H 0.157 0.843 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.478 -6.013 -2.113 8.404 hybrid contribution 1.484 -0.529 0.527 1.661 sum -3.994 -6.541 -1.586 7.827 Atomic orbital electron populations 1.22794 0.81222 1.02773 1.00258 1.87939 1.19531 1.27355 1.95447 1.22063 0.90765 0.85864 1.01176 1.30885 1.03936 1.29372 1.11846 1.07369 0.75607 0.76098 0.74167 1.93502 1.84406 1.70330 1.45950 1.93549 1.84448 1.70198 1.44920 1.50690 1.22856 1.74140 1.08788 1.19098 1.08436 1.29279 0.89369 0.87825 1.25663 0.99715 0.92955 0.97511 1.70113 1.25634 1.15182 1.34867 0.86151 0.79485 0.78948 0.81245 1.18997 1.20344 1.18881 1.18485 0.90036 0.89615 0.85359 1.21656 0.94189 1.03186 0.99102 1.21236 0.99046 0.96810 0.92504 1.21596 0.95745 1.10852 0.98428 1.22082 0.92129 0.94903 0.94294 1.67294 1.40208 1.19638 0.97886 0.89543 0.93869 0.93838 0.92131 0.91912 0.84737 0.85091 0.91181 0.84266 0.86523 0.86657 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -6.01 10.70 -35.23 -0.38 -6.39 16 3 C 0.08 1.29 5.95 37.15 0.22 1.51 16 4 C -0.64 -11.60 6.55 37.15 0.24 -11.36 16 5 S 2.57 59.37 5.17 -107.50 -0.56 58.82 16 6 O -0.95 -24.14 17.11 -57.54 -0.98 -25.12 16 7 O -0.94 -23.90 15.82 -57.54 -0.91 -24.81 16 8 N -0.75 -18.70 2.85 -11.15 -0.03 -18.73 16 9 C -0.33 -8.19 8.08 -15.07 -0.12 -8.31 16 10 H 0.10 2.41 7.89 -52.49 -0.41 2.00 16 11 C 0.05 1.35 3.13 -17.46 -0.05 1.30 16 12 N -0.83 -21.75 11.72 55.49 0.65 -21.10 16 13 Si 0.92 18.58 29.43 -169.99 -5.00 13.58 16 14 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 15 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 17 C 0.40 9.72 6.75 -155.07 -1.05 8.67 16 18 C -0.15 -3.50 7.84 -39.19 -0.31 -3.81 16 19 C -0.07 -1.33 10.17 -39.32 -0.40 -1.73 16 20 C -0.24 -4.32 10.11 -39.38 -0.40 -4.72 16 21 C 0.12 2.43 11.18 -17.57 -0.20 2.23 16 22 N -0.53 -12.39 7.88 -12.43 -0.10 -12.49 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.13 2.41 8.14 -51.93 -0.42 1.98 16 29 H 0.13 2.22 8.14 -51.92 -0.42 1.79 16 30 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.14 3.21 5.09 -52.49 -0.27 2.95 16 32 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -32.54 305.23 -7.70 -40.24 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.04 Total: 6.22 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.95 Total: -14.82 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.52 Total: -52.32 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -2.27 Total: -56.32 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.00 Total: 13.58 kcal Atomic # 16 Polarization: 59.37 SS G_CDS: -0.56 Total: 58.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.54 -7.70 -40.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903169905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.833 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds