Wall clock time and date at job start Tue Mar 31 2020 05:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00139 * 2 1 4 4 C 1.52994 * 109.47421 * 180.02562 * 3 2 1 5 5 S 1.81403 * 109.47176 * 180.02562 * 4 3 2 6 6 O 1.42092 * 110.54430 * 68.37604 * 5 4 3 7 7 O 1.42103 * 110.54137 * 291.62303 * 5 4 3 8 8 N 1.65607 * 104.44886 * 180.02562 * 5 4 3 9 9 C 1.36913 * 119.99414 * 263.08487 * 8 5 4 10 10 H 1.08000 * 119.99992 * 49.80215 * 9 8 5 11 11 C 1.38811 * 119.99462 * 229.79789 * 9 8 5 12 12 N 1.31562 * 120.00363 * 17.70357 * 11 9 8 13 13 Si 1.86804 * 119.99873 * 197.70171 * 11 9 8 14 14 H 1.48501 * 109.47164 * 60.00228 * 13 11 9 15 15 H 1.48498 * 109.47171 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47176 * 300.00329 * 13 11 9 17 17 C 1.38834 * 119.99965 * 83.08429 * 8 5 4 18 18 C 1.39228 * 119.70984 * 180.02562 * 17 8 5 19 19 C 1.38308 * 119.09109 * 180.02562 * 18 17 8 20 20 C 1.38887 * 118.50535 * 359.97438 * 19 18 17 21 21 C 1.38123 * 119.34075 * 0.25310 * 20 19 18 22 22 N 1.31896 * 120.86163 * 359.47245 * 21 20 19 23 23 H 1.09004 * 109.47204 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46649 * 299.99302 * 1 2 3 25 25 H 1.08996 * 109.47800 * 59.99635 * 1 2 3 26 26 H 1.09007 * 109.46628 * 60.00197 * 3 2 1 27 27 H 1.09002 * 109.47466 * 300.00736 * 3 2 1 28 28 H 1.08996 * 109.46760 * 60.00303 * 4 3 2 29 29 H 1.09002 * 109.47204 * 300.00655 * 4 3 2 30 30 H 0.96998 * 120.00066 * 179.97438 * 12 11 9 31 31 H 1.07998 * 120.45315 * 0.03828 * 18 17 8 32 32 H 1.07994 * 120.74421 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.33110 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.56882 * 179.74868 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2732 2.8419 0.0001 6 8 4.0285 3.4961 1.2375 7 8 4.0276 3.4976 -1.2364 8 7 5.9063 2.5671 -0.0014 9 6 6.6059 2.5934 1.1752 10 1 6.2549 2.0266 2.0249 11 6 7.7663 3.3485 1.2759 12 7 8.0133 4.2956 0.3968 13 14 8.9774 3.0197 2.6597 14 1 9.4666 1.6207 2.5674 15 1 10.1255 3.9546 2.5452 16 1 8.3026 3.2229 3.9668 17 6 6.5659 2.3102 -1.1957 18 6 7.9389 2.0795 -1.1899 19 6 8.5832 1.8253 -2.3871 20 6 7.8308 1.8096 -3.5544 21 6 6.4725 2.0515 -3.4874 22 7 5.8833 2.2860 -2.3310 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8463 0.8901 27 1 1.6886 1.8465 -0.8899 28 1 3.8566 0.6440 -0.8909 29 1 3.8574 0.6435 0.8891 30 1 8.8240 4.8234 0.4674 31 1 8.4933 2.0985 -0.2632 32 1 9.6472 1.6423 -2.4135 33 1 8.3037 1.6146 -4.5056 34 1 5.8846 2.0442 -4.3933 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903169905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:52 Heat of formation + Delta-G solvation = -79.682654 kcal Electronic energy + Delta-G solvation = -21302.289256 eV Core-core repulsion = 17941.797378 eV Total energy + Delta-G solvation = -3360.491878 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89654 -39.02995 -37.92341 -37.34550 -36.69458 -34.05757 -32.95956 -32.69454 -30.55678 -27.49170 -26.95498 -24.59853 -24.00374 -23.47788 -20.38547 -19.86536 -18.90983 -17.88498 -17.45645 -17.29358 -16.83303 -16.64797 -16.35565 -16.15202 -15.94621 -15.52543 -15.00010 -14.96908 -14.54930 -13.79106 -13.70861 -13.35316 -13.21418 -13.14459 -12.93197 -12.76891 -12.73029 -12.64441 -12.42188 -12.22324 -12.12758 -11.83204 -11.31457 -10.81896 -10.64608 -10.45811 -9.98349 -8.87007 -8.31802 -6.37028 -0.62559 0.71361 0.75474 1.46152 1.48578 1.56982 1.87210 2.36616 2.64627 2.78260 3.11259 3.34680 3.46323 3.55661 3.73093 3.82688 4.05461 4.27554 4.38735 4.45900 4.51357 4.54364 4.62182 4.64557 4.71810 4.79594 5.13826 5.25589 5.40089 5.63341 5.77712 5.99728 6.06039 6.50181 6.71088 7.05127 7.50905 8.61638 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.007371 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.014468 B = 3797.587304 C = 4887.880956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.402 6.402 3 C 0.074 3.926 4 C -0.608 4.608 5 S 2.570 3.430 6 O -0.988 6.988 7 O -0.975 6.975 8 N -0.769 5.769 9 C -0.352 4.352 10 H 0.109 0.891 11 C 0.017 3.983 12 N -0.869 5.869 13 Si 0.981 3.019 14 H -0.249 1.249 15 H -0.276 1.276 16 H -0.265 1.265 17 C 0.368 3.632 18 C -0.179 4.179 19 C -0.068 4.068 20 C -0.224 4.224 21 C 0.108 3.892 22 N -0.559 5.559 23 H 0.109 0.891 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.278 0.722 31 H 0.127 0.873 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 -8.772 -3.126 10.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.321 6.321 3 C -0.005 4.005 4 C -0.737 4.737 5 S 2.673 3.327 6 O -0.978 6.978 7 O -0.964 6.964 8 N -0.583 5.583 9 C -0.486 4.486 10 H 0.127 0.873 11 C -0.192 4.192 12 N -0.503 5.503 13 Si 0.801 3.199 14 H -0.172 1.172 15 H -0.201 1.201 16 H -0.189 1.189 17 C 0.135 3.865 18 C -0.206 4.206 19 C -0.094 4.094 20 C -0.246 4.246 21 C -0.049 4.049 22 N -0.277 5.277 23 H 0.127 0.873 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.087 0.913 31 H 0.144 0.856 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.132 -7.745 -3.039 9.775 hybrid contribution 1.268 -0.101 0.647 1.427 sum -3.864 -7.845 -2.392 9.067 Atomic orbital electron populations 1.23127 0.78757 1.04735 1.01497 1.87888 1.22161 1.26411 1.95657 1.22102 0.89212 0.86856 1.02289 1.30470 1.05512 1.24843 1.12890 1.06843 0.75355 0.77611 0.72899 1.93448 1.84856 1.72714 1.46808 1.93497 1.84852 1.72467 1.45622 1.50704 1.23183 1.75230 1.09137 1.19448 1.09303 1.29915 0.89918 0.87317 1.26496 1.00955 0.92174 0.99586 1.70225 1.26286 1.16627 1.37135 0.85215 0.77135 0.79544 0.77978 1.17248 1.20111 1.18912 1.18728 0.90881 0.91313 0.85536 1.21721 0.93824 1.04830 1.00179 1.21688 1.00833 0.95214 0.91669 1.22070 0.94924 1.07758 0.99834 1.22823 0.93722 0.94137 0.94259 1.67291 1.41275 1.20499 0.98650 0.87287 0.92606 0.92672 0.91016 0.91096 0.84153 0.83674 0.91255 0.85550 0.83107 0.82023 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -11.80 10.70 -148.98 -1.59 -13.39 16 3 C 0.07 2.32 5.95 71.98 0.43 2.75 16 4 C -0.61 -21.92 6.55 71.98 0.47 -21.45 16 5 S 2.57 122.01 5.17 -56.49 -0.29 121.72 16 6 O -0.99 -51.92 17.11 -127.65 -2.18 -54.10 16 7 O -0.97 -50.98 15.82 -127.65 -2.02 -53.00 16 8 N -0.77 -39.33 2.85 -189.20 -0.54 -39.87 16 9 C -0.35 -18.16 8.08 84.04 0.68 -17.48 16 10 H 0.11 5.23 7.89 -2.91 -0.02 5.20 16 11 C 0.02 0.85 3.13 84.87 0.27 1.12 16 12 N -0.87 -47.21 11.72 21.65 0.25 -46.96 16 13 Si 0.98 38.50 29.43 68.60 2.02 40.52 16 14 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 15 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 16 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 17 C 0.37 18.18 6.75 133.12 0.90 19.08 16 18 C -0.18 -8.12 7.84 22.52 0.18 -7.94 16 19 C -0.07 -2.44 10.17 22.44 0.23 -2.22 16 20 C -0.22 -7.20 10.11 22.40 0.23 -6.97 16 21 C 0.11 4.01 11.18 84.66 0.95 4.96 16 22 N -0.56 -25.97 7.88 -193.24 -1.52 -27.49 16 23 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 29 H 0.15 4.83 8.14 -2.39 -0.02 4.81 16 30 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.13 5.94 5.09 -2.91 -0.01 5.93 16 32 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.18 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -72.92 305.23 0.79 -72.13 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 1.11 Total: 27.06 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 5.57 Total: -26.62 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -1.81 Total: -114.32 kcal Atomic # 8 Polarization: -114.69 SS G_CDS: -5.80 Total: -120.49 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.02 Total: 40.52 kcal Atomic # 16 Polarization: 122.01 SS G_CDS: -0.29 Total: 121.72 kcal Total: -72.92 0.79 -72.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903169905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.553 kcal (2) G-P(sol) polarization free energy of solvation -72.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds