Wall clock time and date at job start Tue Mar 31 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47368 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47141 * 120.00228 * 3 2 1 7 7 C 1.37874 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00106 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47123 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.47185 * 180.02562 * 10 9 7 12 12 C 1.34742 * 117.00167 * 180.02562 * 11 10 9 13 13 O 1.21500 * 119.99630 * 359.97438 * 12 11 10 14 14 C 1.47559 * 120.00237 * 179.97438 * 12 11 10 15 15 C 1.40741 * 119.75200 * 359.97438 * 14 12 11 16 16 C 1.35662 * 120.81892 * 179.97438 * 15 14 12 17 17 C 1.40792 * 120.03202 * 0.02562 * 16 15 14 18 18 C 1.40330 * 120.94312 * 179.97438 * 17 16 15 19 19 C 1.37675 * 119.58318 * 180.02562 * 18 17 16 20 20 O 1.35809 * 119.63671 * 179.97438 * 19 18 17 21 21 C 1.39916 * 120.73379 * 359.97438 * 19 18 17 22 22 C 1.35905 * 120.89279 * 0.28249 * 21 19 18 23 23 C 1.40733 * 119.88484 * 359.45351 * 22 21 19 24 24 C 1.38615 * 119.74998 * 179.97438 * 14 12 11 25 25 H 0.97003 * 119.99811 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47384 * 59.99548 * 9 7 2 27 27 H 1.09001 * 109.46783 * 299.99902 * 9 7 2 28 28 H 1.09004 * 109.47365 * 59.99722 * 10 9 7 29 29 H 1.09006 * 109.47037 * 300.00026 * 10 9 7 30 30 H 1.08006 * 119.59090 * 0.02562 * 15 14 12 31 31 H 1.07993 * 119.98254 * 180.02562 * 16 15 14 32 32 H 1.07997 * 120.21050 * 0.04676 * 18 17 16 33 33 H 0.96702 * 113.99920 * 270.02466 * 20 19 18 34 34 H 1.08002 * 119.55015 * 179.97438 * 21 19 18 35 35 H 1.07997 * 120.05872 * 179.72119 * 22 21 19 36 36 H 1.08000 * 120.26145 * 359.97438 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 8 1.5193 -4.9195 -0.0032 12 6 2.2531 -6.0495 -0.0027 13 8 3.4665 -5.9859 -0.0013 14 6 1.5833 -7.3643 -0.0038 15 6 0.1775 -7.4319 -0.0048 16 6 -0.4608 -8.6290 -0.0064 17 6 0.2832 -9.8242 -0.0064 18 6 -0.3572 -11.0729 -0.0075 19 6 0.3979 -12.2241 -0.0069 20 8 -0.2208 -13.4330 -0.0074 21 6 1.7957 -12.1623 -0.0059 22 6 2.4413 -10.9665 0.0004 23 6 1.7008 -9.7697 -0.0057 24 6 2.3433 -8.5235 -0.0038 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5562 -0.8919 27 1 0.6241 -2.5574 0.8880 28 1 2.8713 -3.6047 0.8890 29 1 2.8727 -3.6039 -0.8910 30 1 -0.4004 -6.5194 -0.0052 31 1 -1.5401 -8.6651 -0.0076 32 1 -1.4357 -11.1304 -0.0090 33 1 -0.4010 -13.7830 0.8759 34 1 2.3693 -13.0775 -0.0051 35 1 3.5208 -10.9346 0.0056 36 1 3.4218 -8.4672 -0.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913285869.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:18 Heat of formation + Delta-G solvation = -97.954973 kcal Electronic energy + Delta-G solvation = -20549.355408 eV Core-core repulsion = 17156.167574 eV Total energy + Delta-G solvation = -3393.187834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86670 -39.80445 -38.28317 -36.16452 -35.45885 -33.35401 -32.90267 -30.66999 -30.00938 -29.19981 -25.48360 -24.10827 -23.53664 -22.33023 -21.35801 -20.72686 -19.01381 -18.11841 -17.15399 -16.70771 -16.28305 -15.94400 -15.90162 -15.53554 -15.11088 -14.58227 -14.44670 -13.81490 -13.73091 -13.69161 -13.16525 -13.06284 -12.58030 -12.36489 -12.01559 -11.55187 -11.36570 -11.17579 -11.07131 -10.83285 -10.75379 -10.72953 -10.32365 -10.25314 -9.66818 -9.65107 -9.33106 -8.84038 -8.45148 -8.16723 -6.11456 -4.15918 0.01405 0.53563 1.59123 2.23808 3.04659 3.08192 3.29612 3.33666 3.37364 3.71014 3.88035 4.29083 4.37930 4.49627 4.69538 4.80346 4.86954 4.94855 5.03639 5.14588 5.25134 5.44959 5.55370 5.64205 5.79153 5.92719 6.00699 6.06840 6.07489 6.20186 6.22214 6.36671 6.58492 6.61692 6.91157 7.23184 7.53620 7.60611 7.84923 8.13640 8.23404 8.89312 9.48489 11.00018 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.048871 B = 0.002573 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.798064 B =10879.595847 C =11429.375848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.351 6.351 12 C 0.499 3.501 13 O -0.515 6.515 14 C -0.114 4.114 15 C -0.062 4.062 16 C -0.122 4.122 17 C -0.014 4.014 18 C -0.141 4.141 19 C 0.117 3.883 20 O -0.500 6.500 21 C -0.148 4.148 22 C -0.073 4.073 23 C -0.076 4.076 24 C -0.031 4.031 25 H 0.264 0.736 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.392 0.608 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -25.430 1.668 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.267 6.267 12 C 0.344 3.656 13 O -0.406 6.406 14 C -0.115 4.115 15 C -0.080 4.080 16 C -0.140 4.140 17 C -0.015 4.015 18 C -0.160 4.160 19 C 0.073 3.927 20 O -0.310 6.310 21 C -0.167 4.167 22 C -0.091 4.091 23 C -0.076 4.076 24 C -0.049 4.049 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.248 0.752 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.431 -25.167 1.059 25.193 hybrid contribution 0.512 0.912 0.484 1.153 sum 0.081 -24.255 1.543 24.304 Atomic orbital electron populations 1.69961 1.06091 1.27124 1.49675 1.24980 0.94925 0.99387 0.94840 0.86524 0.79482 0.82448 0.78798 1.20056 1.21118 1.20054 1.20937 0.93159 0.90103 1.52347 0.92284 1.19169 0.94179 0.88953 0.98907 1.23695 0.96448 0.78465 1.01087 1.86573 1.41922 1.15606 1.82559 1.21068 0.85651 0.85613 0.73247 1.90801 1.15034 1.88396 1.46334 1.19268 0.94102 0.90780 1.07321 1.21197 0.93059 0.99245 0.94504 1.20954 1.00160 0.90919 1.01919 1.18062 0.92337 0.93598 0.97468 1.21521 1.00466 0.90847 1.03146 1.18485 0.90295 0.84729 0.99197 1.84799 1.79743 1.32809 1.33694 1.21107 0.93760 0.98790 1.03015 1.20990 1.00113 0.90843 0.97160 1.18001 0.92722 0.93470 1.03453 1.21513 1.00602 0.89855 0.92897 0.92635 0.95300 0.95312 0.92162 0.92170 0.83678 0.84614 0.84585 0.75152 0.85094 0.84632 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.68 5.41 37.16 0.20 1.88 16 11 O -0.35 -7.05 9.43 -40.61 -0.38 -7.43 16 12 C 0.50 9.08 7.89 34.53 0.27 9.35 16 13 O -0.51 -10.35 16.09 -19.27 -0.31 -10.66 16 14 C -0.11 -1.65 5.87 -105.01 -0.62 -2.26 16 15 C -0.06 -0.79 9.51 -39.56 -0.38 -1.16 16 16 C -0.12 -1.28 9.73 -39.54 -0.38 -1.67 16 17 C -0.01 -0.15 5.75 -106.76 -0.61 -0.77 16 18 C -0.14 -1.27 9.72 -39.00 -0.38 -1.65 16 19 C 0.12 1.01 6.69 -39.16 -0.26 0.74 16 20 O -0.50 -3.60 13.47 -19.14 -0.26 -3.86 16 21 C -0.15 -1.20 9.88 -39.79 -0.39 -1.59 16 22 C -0.07 -0.64 9.74 -39.48 -0.38 -1.02 16 23 C -0.08 -0.84 5.74 -106.83 -0.61 -1.45 16 24 C -0.03 -0.38 9.33 -38.70 -0.36 -0.74 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.15 1.82 7.57 -52.48 -0.40 1.43 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.39 0.90 9.06 45.56 0.41 1.31 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.14 1.68 7.61 -52.49 -0.40 1.28 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -32.99 323.39 -8.14 -41.13 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -3.31 Total: -1.53 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -4.47 Total: -13.33 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.95 Total: -21.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.99 -8.14 -41.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913285869.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.822 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds