Wall clock time and date at job start Tue Mar 31 2020 06:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47368 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47141 * 120.00228 * 3 2 1 7 7 C 1.37874 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00106 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47123 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.47185 * 180.02562 * 10 9 7 12 12 C 1.34742 * 117.00167 * 180.02562 * 11 10 9 13 13 O 1.21500 * 119.99630 * 359.97438 * 12 11 10 14 14 C 1.47559 * 120.00237 * 179.97438 * 12 11 10 15 15 C 1.40741 * 119.75200 * 359.97438 * 14 12 11 16 16 C 1.35662 * 120.81892 * 179.97438 * 15 14 12 17 17 C 1.40792 * 120.03202 * 0.02562 * 16 15 14 18 18 C 1.40330 * 120.94312 * 179.97438 * 17 16 15 19 19 C 1.37675 * 119.58318 * 180.02562 * 18 17 16 20 20 O 1.35809 * 119.63671 * 179.97438 * 19 18 17 21 21 C 1.39916 * 120.73379 * 359.97438 * 19 18 17 22 22 C 1.35905 * 120.89279 * 0.28249 * 21 19 18 23 23 C 1.40733 * 119.88484 * 359.45351 * 22 21 19 24 24 C 1.38615 * 119.74998 * 179.97438 * 14 12 11 25 25 H 0.97003 * 119.99811 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47384 * 59.99548 * 9 7 2 27 27 H 1.09001 * 109.46783 * 299.99902 * 9 7 2 28 28 H 1.09004 * 109.47365 * 59.99722 * 10 9 7 29 29 H 1.09006 * 109.47037 * 300.00026 * 10 9 7 30 30 H 1.08006 * 119.59090 * 0.02562 * 15 14 12 31 31 H 1.07993 * 119.98254 * 180.02562 * 16 15 14 32 32 H 1.07997 * 120.21050 * 0.04676 * 18 17 16 33 33 H 0.96702 * 113.99920 * 270.02466 * 20 19 18 34 34 H 1.08002 * 119.55015 * 179.97438 * 21 19 18 35 35 H 1.07997 * 120.05872 * 179.72119 * 22 21 19 36 36 H 1.08000 * 120.26145 * 359.97438 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 8 1.5193 -4.9195 -0.0032 12 6 2.2531 -6.0495 -0.0027 13 8 3.4665 -5.9859 -0.0013 14 6 1.5833 -7.3643 -0.0038 15 6 0.1775 -7.4319 -0.0048 16 6 -0.4608 -8.6290 -0.0064 17 6 0.2832 -9.8242 -0.0064 18 6 -0.3572 -11.0729 -0.0075 19 6 0.3979 -12.2241 -0.0069 20 8 -0.2208 -13.4330 -0.0074 21 6 1.7957 -12.1623 -0.0059 22 6 2.4413 -10.9665 0.0004 23 6 1.7008 -9.7697 -0.0057 24 6 2.3433 -8.5235 -0.0038 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5562 -0.8919 27 1 0.6241 -2.5574 0.8880 28 1 2.8713 -3.6047 0.8890 29 1 2.8727 -3.6039 -0.8910 30 1 -0.4004 -6.5194 -0.0052 31 1 -1.5401 -8.6651 -0.0076 32 1 -1.4357 -11.1304 -0.0090 33 1 -0.4010 -13.7830 0.8759 34 1 2.3693 -13.0775 -0.0051 35 1 3.5208 -10.9346 0.0056 36 1 3.4218 -8.4672 -0.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913285869.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:17 Heat of formation + Delta-G solvation = -117.769528 kcal Electronic energy + Delta-G solvation = -20550.214632 eV Core-core repulsion = 17156.167574 eV Total energy + Delta-G solvation = -3394.047057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84989 -41.05223 -39.04355 -37.72306 -36.26256 -35.44995 -33.73226 -32.42735 -31.07885 -30.07729 -27.27270 -25.38468 -24.33930 -23.21809 -22.93678 -22.20170 -19.89345 -19.22690 -18.46490 -18.07891 -17.63737 -17.55904 -16.89220 -16.64857 -16.36403 -15.85257 -15.31038 -15.18315 -14.77300 -14.46715 -14.40216 -14.35606 -14.24365 -13.46546 -13.18391 -13.05814 -12.87210 -12.61986 -12.60218 -12.32366 -12.08574 -11.92956 -11.57695 -11.51211 -11.46641 -11.39918 -11.05937 -10.61636 -9.65164 -8.95320 -8.27748 -6.41168 -0.85657 -0.28049 0.73311 1.25303 1.40323 1.44448 1.51749 1.65995 2.00895 2.39578 2.93702 3.06578 3.21111 3.54310 3.56293 3.76702 3.97534 4.02324 4.13750 4.19790 4.20856 4.26070 4.34675 4.65158 4.71939 4.80498 4.81665 5.01529 5.17110 5.20270 5.25276 5.36232 5.40001 5.44834 5.49323 5.66133 5.71966 5.77146 6.05154 6.62793 6.72289 6.83454 7.28504 8.84718 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.048871 B = 0.002573 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.798064 B =10879.595847 C =11429.375848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.090 3.910 11 O -0.358 6.358 12 C 0.499 3.501 13 O -0.540 6.540 14 C -0.142 4.142 15 C -0.080 4.080 16 C -0.110 4.110 17 C -0.021 4.021 18 C -0.151 4.151 19 C 0.128 3.872 20 O -0.507 6.507 21 C -0.145 4.145 22 C -0.075 4.075 23 C -0.092 4.092 24 C -0.021 4.021 25 H 0.268 0.732 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.154 0.846 33 H 0.416 0.584 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -27.574 1.773 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.005 4.005 10 C 0.017 3.983 11 O -0.274 6.274 12 C 0.347 3.653 13 O -0.433 6.433 14 C -0.143 4.143 15 C -0.098 4.098 16 C -0.128 4.128 17 C -0.021 4.021 18 C -0.169 4.169 19 C 0.083 3.917 20 O -0.321 6.321 21 C -0.163 4.163 22 C -0.092 4.092 23 C -0.092 4.092 24 C -0.039 4.039 25 H 0.077 0.923 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.180 0.820 32 H 0.172 0.828 33 H 0.276 0.724 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.086 -27.346 1.183 27.372 hybrid contribution 0.335 1.256 0.460 1.379 sum 0.250 -26.091 1.643 26.144 Atomic orbital electron populations 1.70088 1.07808 1.28380 1.50266 1.25969 0.95864 1.03422 0.94031 0.85369 0.78191 0.77382 0.79325 1.19066 1.20421 1.19021 1.21342 0.93722 0.91201 1.52689 0.91664 1.18973 0.94302 0.90468 0.96767 1.23227 0.95181 0.78753 1.01123 1.86560 1.42053 1.15619 1.83168 1.21744 0.85532 0.86007 0.72064 1.90768 1.16001 1.88633 1.47891 1.19130 0.94976 0.89060 1.11100 1.21136 0.92317 0.99993 0.96398 1.21209 1.01456 0.90033 1.00093 1.18285 0.92386 0.94323 0.97110 1.21692 1.01536 0.90246 1.03447 1.18633 0.90600 0.85115 0.97325 1.84741 1.79548 1.32003 1.35822 1.21418 0.93863 0.99437 1.01582 1.21233 1.01239 0.90166 0.96597 1.18182 0.93273 0.93541 1.04160 1.21614 1.00720 0.89894 0.91713 0.92289 0.97439 0.97411 0.92040 0.92099 0.84539 0.81963 0.82805 0.72381 0.82667 0.82554 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.75 5.35 29.85 0.16 1.91 16 10 C 0.09 4.19 5.41 71.98 0.39 4.58 16 11 O -0.36 -15.12 9.43 -56.53 -0.53 -15.65 16 12 C 0.50 18.95 7.89 70.28 0.55 19.51 16 13 O -0.54 -22.47 16.09 19.83 0.32 -22.15 16 14 C -0.14 -4.23 5.87 -20.12 -0.12 -4.35 16 15 C -0.08 -2.09 9.51 22.28 0.21 -1.88 16 16 C -0.11 -2.22 9.73 22.30 0.22 -2.00 16 17 C -0.02 -0.41 5.75 -21.25 -0.12 -0.53 16 18 C -0.15 -2.29 9.72 22.65 0.22 -2.07 16 19 C 0.13 1.75 6.69 22.54 0.15 1.90 16 20 O -0.51 -5.38 13.47 -91.40 -1.23 -6.62 16 21 C -0.14 -1.83 9.88 22.13 0.22 -1.61 16 22 C -0.07 -1.11 9.74 22.34 0.22 -0.89 16 23 C -0.09 -1.88 5.74 -21.29 -0.12 -2.00 16 24 C -0.02 -0.53 9.33 22.84 0.21 -0.31 16 25 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 29 H 0.06 2.79 8.14 -2.38 -0.02 2.77 16 30 H 0.14 3.67 7.57 -2.91 -0.02 3.64 16 31 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.42 0.27 9.06 -74.06 -0.67 -0.41 16 34 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.15 3.43 7.61 -2.91 -0.02 3.41 16 Total: -1.00 -72.01 323.39 4.19 -67.82 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 0.44 Total: 4.54 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 2.89 Total: -18.33 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.28 Total: -55.48 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.45 Total: -44.42 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.01 4.19 -67.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913285869.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.950 kcal (2) G-P(sol) polarization free energy of solvation -72.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds