Wall clock time and date at job start Tue Mar 31 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30398 * 125.98126 * 2 1 4 4 N 1.39915 * 108.98710 * 180.02562 * 3 2 1 5 5 C 1.46490 * 125.74302 * 180.02562 * 4 3 2 6 6 C 1.34317 * 108.52065 * 0.02562 * 4 3 2 7 7 Cl 1.73603 * 126.32631 * 179.97438 * 6 4 3 8 8 C 1.38365 * 107.35374 * 359.97438 * 6 4 3 9 9 C 1.47148 * 126.44856 * 179.73992 * 8 6 4 10 10 O 1.21539 * 120.00096 * 90.02422 * 9 8 6 11 11 O 1.34775 * 119.99989 * 270.02162 * 9 8 6 12 12 C 1.45196 * 116.99723 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47011 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47567 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47235 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00000 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99814 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00046 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99902 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46891 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46938 * 120.00473 * 19 17 15 22 22 H 1.48500 * 109.47156 * 240.00161 * 19 17 15 23 23 H 1.09003 * 109.47238 * 269.97558 * 1 2 3 24 24 H 1.08997 * 109.47294 * 29.97603 * 1 2 3 25 25 H 1.09004 * 109.46897 * 149.97347 * 1 2 3 26 26 H 1.09005 * 109.47544 * 269.98170 * 5 4 3 27 27 H 1.09006 * 109.46993 * 29.97890 * 5 4 3 28 28 H 1.09004 * 109.47450 * 149.97787 * 5 4 3 29 29 H 1.08995 * 109.47348 * 299.99725 * 12 11 9 30 30 H 1.08999 * 109.47499 * 60.00278 * 12 11 9 31 31 H 1.09007 * 109.46756 * 300.00302 * 13 12 11 32 32 H 1.08999 * 109.46959 * 59.99707 * 13 12 11 33 33 H 1.09000 * 109.47094 * 300.00187 * 14 13 12 34 34 H 1.09007 * 109.46586 * 59.99575 * 14 13 12 35 35 H 0.96995 * 120.00376 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0552 0.0000 4 7 3.6112 0.6463 -0.0006 5 6 4.7770 1.5332 -0.0002 6 6 3.6469 -0.6964 -0.0015 7 17 5.0725 -1.6872 -0.0032 8 6 2.3377 -1.1442 -0.0009 9 6 1.8936 -2.5470 -0.0070 10 8 1.7120 -3.1315 1.0431 11 8 1.6881 -3.1838 -1.1769 12 6 1.2500 -4.5663 -1.1068 13 6 1.0716 -5.1172 -2.5230 14 6 0.6106 -6.5742 -2.4493 15 6 0.4344 -7.1166 -3.8442 16 1 0.6318 -6.4853 -4.6980 17 6 0.0220 -8.4190 -4.0304 18 7 -0.2180 -9.1878 -2.9908 19 14 -0.1958 -9.0915 -5.7595 20 1 0.1363 -8.0338 -6.7475 21 1 0.7078 -10.2533 -5.9562 22 1 -1.6042 -9.5222 -5.9494 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5143 26 1 5.0662 1.7537 -1.0278 27 1 4.5273 2.4613 0.5140 28 1 5.6051 1.0447 0.5134 29 1 1.9976 -5.1580 -0.5787 30 1 0.3009 -4.6201 -0.5734 31 1 0.3241 -4.5254 -3.0515 32 1 2.0209 -5.0634 -3.0560 33 1 1.3584 -7.1656 -1.9209 34 1 -0.3386 -6.6283 -1.9160 35 1 -0.5084 -10.1039 -3.1217 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914625420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:39 Heat of formation + Delta-G solvation = -50.177365 kcal Electronic energy + Delta-G solvation = -19618.598443 eV Core-core repulsion = 16257.342304 eV Total energy + Delta-G solvation = -3361.256139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.75128 -41.16632 -38.29064 -37.79798 -35.91501 -35.29460 -33.67676 -31.88740 -30.60626 -29.04398 -27.25759 -25.39757 -23.92304 -22.15854 -22.02798 -21.20814 -19.16008 -18.65066 -18.08840 -17.60943 -17.13313 -17.02799 -16.47386 -16.11091 -15.34360 -14.88268 -14.54436 -14.47453 -14.13294 -13.84698 -13.79363 -13.74217 -13.62000 -13.32262 -12.98490 -12.85835 -12.84272 -12.49661 -12.41152 -12.14076 -12.08045 -11.83072 -11.45402 -11.40379 -11.20988 -10.55976 -10.47574 -9.99510 -8.20073 -6.31185 -0.01262 0.09917 0.87211 0.95010 1.28441 1.42819 1.42983 1.56599 1.80253 2.42928 3.11383 3.13947 3.56073 3.74126 3.97303 4.03798 4.06879 4.16930 4.29127 4.42944 4.56916 4.65368 4.67156 4.78798 4.81894 4.88583 5.08968 5.17795 5.32853 5.38079 5.51613 5.66556 5.82473 6.15298 6.21278 6.56428 6.84838 7.38195 8.92316 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.003119 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.721539 B = 8974.095694 C = 9312.898147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.125 3.875 3 N -0.279 5.279 4 N -0.341 5.341 5 C 0.078 3.922 6 C 0.168 3.832 7 Cl 0.030 6.970 8 C -0.273 4.273 9 C 0.551 3.449 10 O -0.521 6.521 11 O -0.347 6.347 12 C 0.075 3.925 13 C -0.094 4.094 14 C 0.026 3.974 15 C -0.542 4.542 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.278 1.278 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H -0.002 1.002 34 H -0.001 1.001 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 24.081 6.253 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 N -0.103 5.103 4 N -0.122 5.122 5 C -0.060 4.060 6 C 0.008 3.992 7 Cl 0.058 6.942 8 C -0.288 4.288 9 C 0.394 3.606 10 O -0.409 6.409 11 O -0.263 6.263 12 C 0.001 3.999 13 C -0.131 4.131 14 C -0.011 4.011 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.204 1.204 23 H 0.118 0.882 24 H 0.124 0.876 25 H 0.097 0.903 26 H 0.124 0.876 27 H 0.137 0.863 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.016 0.984 34 H 0.018 0.982 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.036 25.014 6.590 27.747 hybrid contribution 0.104 -1.954 -0.425 2.003 sum 10.141 23.060 6.164 25.935 Atomic orbital electron populations 1.20496 0.83395 1.05183 1.05018 1.22689 0.98484 0.87133 0.95725 1.77261 0.85315 1.21093 1.26586 1.48755 1.07474 1.02326 1.53634 1.22610 0.82466 0.94582 1.06383 1.21914 0.89648 0.85289 1.02329 1.98461 1.34077 1.65206 1.96444 1.18932 0.92164 0.91597 1.26088 1.20179 0.72953 0.85924 0.81588 1.90838 1.48156 1.68043 1.33910 1.86652 1.77509 1.28602 1.33569 1.23264 0.99792 0.76860 0.99938 1.21467 1.01939 0.96603 0.93105 1.18935 0.95132 0.90612 0.96402 1.21651 1.45354 0.97529 0.93414 0.91753 1.25988 0.94947 0.97439 1.01480 1.70100 1.47233 1.08116 1.31872 0.85357 0.77816 0.78355 0.79274 1.18419 1.20461 1.20368 0.88241 0.87623 0.90252 0.87629 0.86302 0.87174 0.91650 0.91165 0.91335 0.91657 0.98408 0.98215 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.28 71.24 0.73 -0.78 16 2 C 0.13 3.04 7.27 43.55 0.32 3.36 16 3 N -0.28 -6.29 12.49 -46.63 -0.58 -6.87 16 4 N -0.34 -6.58 3.98 -357.36 -1.42 -8.01 16 5 C 0.08 0.65 11.28 127.77 1.44 2.09 16 6 C 0.17 3.96 7.54 84.34 0.64 4.60 16 7 Cl 0.03 0.62 28.56 -2.72 -0.08 0.54 16 8 C -0.27 -7.73 6.01 -20.13 -0.12 -7.86 16 9 C 0.55 18.56 7.34 70.16 0.51 19.08 16 10 O -0.52 -20.01 16.90 19.71 0.33 -19.68 16 11 O -0.35 -12.23 10.23 -56.86 -0.58 -12.82 16 12 C 0.07 2.83 5.48 71.98 0.39 3.22 16 13 C -0.09 -3.91 5.53 30.60 0.17 -3.74 16 14 C 0.03 1.39 4.97 29.85 0.15 1.54 16 15 C -0.54 -30.65 9.11 25.60 0.23 -30.42 16 16 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 18 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 19 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.08 1.55 8.00 -2.38 -0.02 1.53 16 26 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.11 0.57 7.77 -2.39 -0.02 0.55 16 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 35 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -71.35 329.80 6.00 -65.35 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: 1.10 Total: 0.33 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 4.93 Total: -8.49 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.72 Total: -71.29 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.25 Total: -32.49 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.08 Total: 0.54 kcal Total: -71.35 6.00 -65.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914625420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.175 kcal (2) G-P(sol) polarization free energy of solvation -71.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds