Wall clock time and date at job start Tue Mar 31 2020 06:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86794 * 120.00351 * 2 1 4 4 H 1.48496 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47329 * 300.00150 * 3 2 1 6 6 H 1.48501 * 109.47125 * 60.00183 * 3 2 1 7 7 C 1.38763 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99734 * 179.97438 * 7 2 1 9 9 O 1.34913 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.34315 * 117.00035 * 180.02562 * 9 7 2 11 11 O 1.21204 * 119.99615 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00071 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.46964 * 179.97438 * 12 10 9 14 14 O 1.42908 * 109.47069 * 179.97438 * 13 12 10 15 15 C 1.35877 * 116.99873 * 179.97438 * 14 13 12 16 16 C 1.39861 * 119.57127 * 0.22972 * 15 14 13 17 17 C 1.35980 * 120.92921 * 180.27784 * 16 15 14 18 18 C 1.40586 * 119.73558 * 359.75237 * 17 16 15 19 19 C 1.40529 * 121.21846 * 180.02562 * 18 17 16 20 20 C 1.36100 * 119.66970 * 180.02562 * 19 18 17 21 21 C 1.39374 * 120.99805 * 359.95328 * 20 19 18 22 22 C 1.36097 * 120.97840 * 359.97438 * 21 20 19 23 23 C 1.40578 * 119.65789 * 0.02572 * 22 21 20 24 24 C 1.36571 * 119.56729 * 179.97438 * 15 14 13 25 25 H 0.97005 * 119.99690 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47416 * 59.99699 * 12 10 9 27 27 H 1.09002 * 109.46699 * 299.99648 * 12 10 9 28 28 H 1.08995 * 109.47222 * 59.99676 * 13 12 10 29 29 H 1.09002 * 109.47204 * 299.99434 * 13 12 10 30 30 H 1.07996 * 119.53253 * 0.02562 * 16 15 14 31 31 H 1.08005 * 120.13174 * 179.77300 * 17 16 15 32 32 H 1.08001 * 120.16662 * 359.97438 * 19 18 17 33 33 H 1.08006 * 119.50126 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.51424 * 180.02562 * 21 20 19 35 35 H 1.07994 * 120.16763 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.18981 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 3.7084 1.3462 -0.0006 5 1 1.8898 2.3964 -1.2124 6 1 1.8898 2.3963 1.2125 7 6 2.0081 -1.2018 -0.0005 8 1 3.0881 -1.2018 -0.0010 9 8 1.3334 -2.3701 -0.0016 10 6 2.0649 -3.4966 -0.0015 11 8 3.2753 -3.4332 -0.0010 12 6 1.3806 -4.8393 -0.0021 13 6 2.4343 -5.9486 -0.0025 14 8 1.7854 -7.2219 -0.0024 15 6 2.5841 -8.3212 -0.0033 16 6 3.9739 -8.1647 0.0006 17 6 4.7990 -9.2455 -0.0059 18 6 4.2518 -10.5405 -0.0114 19 6 5.0753 -11.6792 -0.0175 20 6 4.5118 -12.9181 -0.0233 21 6 3.1272 -13.0769 -0.0222 22 6 2.2983 -11.9975 -0.0148 23 6 2.8435 -10.7017 -0.0087 24 6 2.0192 -9.5646 -0.0028 25 1 -0.4850 0.8401 0.0004 26 1 0.7582 -4.9296 -0.8922 27 1 0.7576 -4.9299 0.8877 28 1 3.0571 -5.8586 0.8874 29 1 3.0570 -5.8579 -0.8925 30 1 4.3977 -7.1713 0.0047 31 1 5.8705 -9.1097 -0.0064 32 1 6.1499 -11.5718 -0.0186 33 1 5.1473 -13.7914 -0.0285 34 1 2.7057 -14.0712 -0.0264 35 1 1.2272 -12.1357 -0.0135 36 1 0.9446 -9.6729 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914911522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:08 Heat of formation + Delta-G solvation = -80.610606 kcal Electronic energy + Delta-G solvation = -20537.007116 eV Core-core repulsion = 17144.571390 eV Total energy + Delta-G solvation = -3392.435725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72679 -39.29911 -38.72888 -35.81872 -35.27766 -32.92725 -32.22276 -31.57930 -29.97575 -28.88558 -25.83021 -24.29565 -23.50506 -22.40384 -22.01550 -19.85966 -18.51172 -17.78924 -17.40856 -16.77796 -16.43927 -16.22494 -15.49058 -14.91074 -14.73324 -14.49157 -14.43592 -14.13126 -13.67086 -13.65115 -13.38675 -13.07454 -12.59031 -12.50193 -12.12071 -11.62770 -11.43819 -11.35759 -11.31328 -11.11943 -10.75974 -10.56345 -10.45164 -10.43567 -9.92820 -9.85925 -9.15849 -8.63461 -8.53683 -7.80037 -6.46107 -4.14483 0.39232 0.89722 1.91547 2.84949 2.99853 3.05813 3.18277 3.25653 3.44376 3.97711 3.97894 4.42876 4.63028 4.67986 4.74356 4.77659 5.01611 5.05088 5.06479 5.11866 5.18056 5.21747 5.25152 5.49811 5.62882 5.67754 5.81339 6.00465 6.03615 6.04459 6.09064 6.22823 6.32383 6.38789 6.59951 6.67312 6.78608 7.34776 7.38084 7.89157 8.62086 9.02338 9.77057 10.71701 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.055946 B = 0.002458 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.364168 B =11390.193505 C =11870.093299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.384 4.384 8 H 0.097 0.903 9 O -0.210 6.210 10 C 0.402 3.598 11 O -0.560 6.560 12 C -0.103 4.103 13 C 0.075 3.925 14 O -0.315 6.315 15 C 0.145 3.855 16 C -0.186 4.186 17 C -0.068 4.068 18 C -0.087 4.087 19 C -0.092 4.092 20 C -0.135 4.135 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.013 4.013 24 C -0.163 4.163 25 H 0.270 0.730 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 -22.678 -0.027 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.460 4.460 8 H 0.115 0.885 9 O -0.117 6.117 10 C 0.248 3.752 11 O -0.459 6.459 12 C -0.141 4.141 13 C 0.000 4.000 14 O -0.229 6.229 15 C 0.099 3.901 16 C -0.204 4.204 17 C -0.086 4.086 18 C -0.087 4.087 19 C -0.110 4.110 20 C -0.153 4.153 21 C -0.128 4.128 22 C -0.133 4.133 23 C -0.013 4.013 24 C -0.182 4.182 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.689 -22.447 -0.028 23.157 hybrid contribution 0.564 0.933 -0.001 1.090 sum 6.253 -21.514 -0.029 22.404 Atomic orbital electron populations 1.70003 1.06033 1.27716 1.46206 1.25370 0.95847 0.98947 0.96091 0.85592 0.79432 0.79928 0.78171 1.18931 1.20118 1.20112 1.21295 0.92437 0.79683 1.52553 0.88506 1.83863 1.39305 1.13323 1.75165 1.22709 0.86454 0.87009 0.78995 1.90562 1.15645 1.88193 1.51483 1.20820 0.98356 0.88750 1.06153 1.22529 0.95094 0.79353 1.03011 1.86012 1.35448 1.13313 1.88099 1.18679 0.89232 0.87167 0.94997 1.21270 0.92730 1.00807 1.05606 1.20903 0.99778 0.90988 0.96915 1.18075 0.92810 0.93790 1.04056 1.20997 0.99290 0.91911 0.98822 1.20779 0.95083 0.97327 1.02148 1.20836 0.93625 0.98765 0.99563 1.20975 0.99925 0.91291 1.01096 1.17769 0.92119 0.93196 0.98188 1.20138 1.00220 0.88952 1.08889 0.92018 0.87921 0.87913 0.90945 0.90939 0.84518 0.85081 0.85737 0.86217 0.86123 0.85540 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 2 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.38 -11.24 9.65 30.93 0.30 -10.95 16 8 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 9 O -0.21 -5.94 9.75 -20.69 -0.20 -6.15 16 10 C 0.40 9.63 7.91 36.01 0.28 9.91 16 11 O -0.56 -14.48 15.22 -19.05 -0.29 -14.77 16 12 C -0.10 -1.82 6.18 -27.88 -0.17 -2.00 16 13 C 0.07 1.18 4.01 37.16 0.15 1.33 16 14 O -0.32 -4.74 10.11 -19.35 -0.20 -4.94 16 15 C 0.15 2.01 6.63 -39.58 -0.26 1.75 16 16 C -0.19 -2.36 8.93 -39.79 -0.36 -2.71 16 17 C -0.07 -0.76 9.76 -39.51 -0.39 -1.14 16 18 C -0.09 -0.99 5.74 -106.81 -0.61 -1.61 16 19 C -0.09 -0.86 9.77 -39.49 -0.39 -1.24 16 20 C -0.14 -1.14 9.95 -39.93 -0.40 -1.53 16 21 C -0.11 -0.93 9.95 -39.93 -0.40 -1.33 16 22 C -0.11 -1.12 9.77 -39.47 -0.39 -1.50 16 23 C -0.01 -0.15 5.74 -106.84 -0.61 -0.76 16 24 C -0.16 -2.05 9.68 -39.35 -0.38 -2.43 16 25 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 27 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 28 H 0.07 1.14 7.58 -51.93 -0.39 0.74 16 29 H 0.07 1.14 7.60 -51.93 -0.39 0.74 16 30 H 0.14 1.68 6.21 -52.49 -0.33 1.36 16 31 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -33.15 319.97 -7.84 -40.98 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.99 Total: 1.51 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.71 Total: -13.14 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.76 Total: -24.39 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.69 Total: -25.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.15 -7.84 -40.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914911522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.629 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds