Wall clock time and date at job start Tue Mar 31 2020 06:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86794 * 120.00351 * 2 1 4 4 H 1.48496 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47329 * 300.00150 * 3 2 1 6 6 H 1.48501 * 109.47125 * 60.00183 * 3 2 1 7 7 C 1.38763 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99734 * 179.97438 * 7 2 1 9 9 O 1.34913 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.34315 * 117.00035 * 180.02562 * 9 7 2 11 11 O 1.21204 * 119.99615 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00071 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.46964 * 179.97438 * 12 10 9 14 14 O 1.42908 * 109.47069 * 179.97438 * 13 12 10 15 15 C 1.35877 * 116.99873 * 179.97438 * 14 13 12 16 16 C 1.39861 * 119.57127 * 0.22972 * 15 14 13 17 17 C 1.35980 * 120.92921 * 180.27784 * 16 15 14 18 18 C 1.40586 * 119.73558 * 359.75237 * 17 16 15 19 19 C 1.40529 * 121.21846 * 180.02562 * 18 17 16 20 20 C 1.36100 * 119.66970 * 180.02562 * 19 18 17 21 21 C 1.39374 * 120.99805 * 359.95328 * 20 19 18 22 22 C 1.36097 * 120.97840 * 359.97438 * 21 20 19 23 23 C 1.40578 * 119.65789 * 0.02572 * 22 21 20 24 24 C 1.36571 * 119.56729 * 179.97438 * 15 14 13 25 25 H 0.97005 * 119.99690 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47416 * 59.99699 * 12 10 9 27 27 H 1.09002 * 109.46699 * 299.99648 * 12 10 9 28 28 H 1.08995 * 109.47222 * 59.99676 * 13 12 10 29 29 H 1.09002 * 109.47204 * 299.99434 * 13 12 10 30 30 H 1.07996 * 119.53253 * 0.02562 * 16 15 14 31 31 H 1.08005 * 120.13174 * 179.77300 * 17 16 15 32 32 H 1.08001 * 120.16662 * 359.97438 * 19 18 17 33 33 H 1.08006 * 119.50126 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.51424 * 180.02562 * 21 20 19 35 35 H 1.07994 * 120.16763 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.18981 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 3.7084 1.3462 -0.0006 5 1 1.8898 2.3964 -1.2124 6 1 1.8898 2.3963 1.2125 7 6 2.0081 -1.2018 -0.0005 8 1 3.0881 -1.2018 -0.0010 9 8 1.3334 -2.3701 -0.0016 10 6 2.0649 -3.4966 -0.0015 11 8 3.2753 -3.4332 -0.0010 12 6 1.3806 -4.8393 -0.0021 13 6 2.4343 -5.9486 -0.0025 14 8 1.7854 -7.2219 -0.0024 15 6 2.5841 -8.3212 -0.0033 16 6 3.9739 -8.1647 0.0006 17 6 4.7990 -9.2455 -0.0059 18 6 4.2518 -10.5405 -0.0114 19 6 5.0753 -11.6792 -0.0175 20 6 4.5118 -12.9181 -0.0233 21 6 3.1272 -13.0769 -0.0222 22 6 2.2983 -11.9975 -0.0148 23 6 2.8435 -10.7017 -0.0087 24 6 2.0192 -9.5646 -0.0028 25 1 -0.4850 0.8401 0.0004 26 1 0.7582 -4.9296 -0.8922 27 1 0.7576 -4.9299 0.8877 28 1 3.0571 -5.8586 0.8874 29 1 3.0570 -5.8579 -0.8925 30 1 4.3977 -7.1713 0.0047 31 1 5.8705 -9.1097 -0.0064 32 1 6.1499 -11.5718 -0.0186 33 1 5.1473 -13.7914 -0.0285 34 1 2.7057 -14.0712 -0.0264 35 1 1.2272 -12.1357 -0.0135 36 1 0.9446 -9.6729 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914911522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:08 Heat of formation + Delta-G solvation = -98.798204 kcal Electronic energy + Delta-G solvation = -20537.795789 eV Core-core repulsion = 17144.571390 eV Total energy + Delta-G solvation = -3393.224399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.65276 -41.09249 -39.89424 -37.46183 -36.54026 -34.35064 -33.82089 -32.93745 -30.78600 -29.80805 -27.77146 -25.71644 -24.41511 -23.36524 -22.86865 -21.62436 -19.95527 -19.58994 -18.33295 -18.16043 -17.62919 -17.60668 -16.64874 -16.44842 -16.21378 -16.18437 -15.67798 -15.16688 -14.68287 -14.56733 -14.36364 -14.15228 -13.92136 -13.87693 -13.60229 -13.21740 -13.07777 -12.43520 -12.41878 -12.28051 -12.17183 -12.09879 -11.99591 -11.64291 -11.55715 -11.16540 -10.78131 -10.72712 -9.37680 -8.66185 -8.57041 -6.37391 -0.40786 0.05683 1.10824 1.25963 1.33254 1.51646 1.58852 1.74520 2.03335 2.21171 2.94534 2.99779 3.16552 3.55668 3.73077 3.85835 3.86255 3.97045 4.06430 4.23152 4.28566 4.33386 4.43114 4.47483 4.64277 4.64854 4.73448 4.84440 4.92554 5.04125 5.15038 5.24688 5.27709 5.31678 5.60625 5.63197 5.74706 5.79534 6.06744 6.31645 6.58819 6.87965 7.69547 8.63818 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.055946 B = 0.002458 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.364168 B =11390.193505 C =11870.093299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.005 4.005 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.422 4.422 8 H 0.085 0.915 9 O -0.241 6.241 10 C 0.403 3.597 11 O -0.581 6.581 12 C -0.092 4.092 13 C 0.088 3.912 14 O -0.322 6.322 15 C 0.116 3.884 16 C -0.205 4.205 17 C -0.064 4.064 18 C -0.104 4.104 19 C -0.101 4.101 20 C -0.132 4.132 21 C -0.106 4.106 22 C -0.129 4.129 23 C -0.032 4.032 24 C -0.167 4.167 25 H 0.280 0.720 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -24.411 -0.035 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.206 4.206 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.497 4.497 8 H 0.102 0.898 9 O -0.149 6.149 10 C 0.251 3.749 11 O -0.480 6.480 12 C -0.130 4.130 13 C 0.012 3.988 14 O -0.236 6.236 15 C 0.071 3.929 16 C -0.224 4.224 17 C -0.082 4.082 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.150 4.150 21 C -0.123 4.123 22 C -0.147 4.147 23 C -0.033 4.033 24 C -0.185 4.185 25 H 0.089 0.911 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.151 0.849 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.587 -24.217 -0.036 25.097 hybrid contribution 0.326 1.164 0.001 1.209 sum 6.913 -23.053 -0.035 24.067 Atomic orbital electron populations 1.70083 1.07693 1.29445 1.46680 1.26587 0.96915 1.02457 0.94600 0.84538 0.77783 0.74596 0.79249 1.18768 1.18440 1.18426 1.21494 0.92255 0.80969 1.55011 0.89765 1.83884 1.40322 1.14211 1.76528 1.23844 0.86458 0.87986 0.76592 1.90533 1.16901 1.88687 1.51836 1.20835 0.98688 0.85623 1.07817 1.22256 0.94142 0.79566 1.02792 1.85952 1.35679 1.13135 1.88859 1.18904 0.89801 0.86979 0.97175 1.21301 0.92583 1.01249 1.07239 1.21206 1.00860 0.90611 0.95477 1.18391 0.93126 0.94633 1.04232 1.21306 1.00391 0.91566 0.98648 1.21215 0.95534 0.98020 1.00252 1.21255 0.93775 0.99706 0.97612 1.21228 1.01147 0.90807 1.01507 1.18046 0.92558 0.93824 0.98834 1.20337 1.00854 0.88901 1.08437 0.91099 0.86128 0.86121 0.91257 0.91252 0.84933 0.82675 0.83475 0.83301 0.83278 0.84052 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.20 13.67 21.63 0.30 -52.90 16 2 C -0.01 -0.29 5.49 84.88 0.47 0.17 16 3 Si 1.02 43.16 29.55 68.60 2.03 45.19 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.42 -25.46 9.65 67.95 0.66 -24.81 16 8 H 0.08 5.14 6.86 -2.91 -0.02 5.12 16 9 O -0.24 -14.12 9.75 14.91 0.15 -13.98 16 10 C 0.40 19.84 7.91 71.24 0.56 20.40 16 11 O -0.58 -30.88 15.22 20.79 0.32 -30.56 16 12 C -0.09 -3.29 6.18 29.85 0.18 -3.10 16 13 C 0.09 2.81 4.01 71.98 0.29 3.10 16 14 O -0.32 -9.84 10.11 -92.16 -0.93 -10.78 16 15 C 0.12 3.29 6.63 22.27 0.15 3.44 16 16 C -0.21 -5.32 8.93 22.14 0.20 -5.12 16 17 C -0.06 -1.38 9.76 22.32 0.22 -1.16 16 18 C -0.10 -2.24 5.74 -21.28 -0.12 -2.36 16 19 C -0.10 -1.63 9.77 22.33 0.22 -1.41 16 20 C -0.13 -1.77 9.95 22.05 0.22 -1.55 16 21 C -0.11 -1.46 9.95 22.05 0.22 -1.24 16 22 C -0.13 -2.28 9.77 22.34 0.22 -2.06 16 23 C -0.03 -0.74 5.74 -21.30 -0.12 -0.87 16 24 C -0.17 -4.21 9.68 22.42 0.22 -4.00 16 25 H 0.28 14.88 8.31 -92.70 -0.77 14.11 16 26 H 0.12 3.90 8.14 -2.39 -0.02 3.89 16 27 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 28 H 0.07 2.24 7.58 -2.39 -0.02 2.22 16 29 H 0.07 2.24 7.60 -2.39 -0.02 2.22 16 30 H 0.13 3.41 6.21 -2.91 -0.02 3.39 16 31 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -73.37 319.97 6.52 -66.85 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.10 Total: 16.74 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 3.57 Total: -20.56 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.30 Total: -52.90 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -0.47 Total: -55.32 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -73.37 6.52 -66.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914911522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.946 kcal (2) G-P(sol) polarization free energy of solvation -73.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds