Wall clock time and date at job start Tue Mar 31 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99857 * 2 1 4 4 H 1.48501 * 109.47158 * 270.00520 * 3 2 1 5 5 H 1.48500 * 109.46757 * 30.00137 * 3 2 1 6 6 H 1.48494 * 109.47322 * 149.99925 * 3 2 1 7 7 C 1.37881 * 120.00634 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99180 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00041 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47556 * 180.02562 * 10 9 7 12 12 O 1.45197 * 109.47459 * 179.97438 * 11 10 9 13 13 C 1.34225 * 117.00038 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99990 * 180.02562 * 13 12 11 16 16 C 1.53006 * 109.47184 * 180.02562 * 15 13 12 17 17 N 1.46504 * 109.46883 * 179.97438 * 16 15 13 18 18 C 1.35048 * 126.03754 * 125.00366 * 17 16 15 19 19 C 1.35371 * 107.72804 * 179.97438 * 18 17 16 20 20 Cl 1.73596 * 126.04419 * 179.97438 * 19 18 17 21 21 C 1.39921 * 107.90854 * 359.97438 * 19 18 17 22 22 N 1.30859 * 108.21521 * 359.75849 * 21 19 18 23 23 H 0.96994 * 120.00307 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47423 * 60.00683 * 9 7 2 25 25 H 1.08998 * 109.47773 * 299.99976 * 9 7 2 26 26 H 1.09004 * 109.47100 * 59.99864 * 10 9 7 27 27 H 1.08998 * 109.47380 * 300.00833 * 10 9 7 28 28 H 1.09001 * 109.46610 * 59.99808 * 11 10 9 29 29 H 1.09004 * 109.46701 * 300.00707 * 11 10 9 30 30 H 1.09001 * 109.47612 * 60.00096 * 15 13 12 31 31 H 1.09001 * 109.47122 * 299.99927 * 15 13 12 32 32 H 1.09001 * 109.47002 * 299.99404 * 16 15 13 33 33 H 1.08993 * 109.46955 * 59.99842 * 16 15 13 34 34 H 1.07999 * 126.12993 * 359.93388 * 18 17 16 35 35 H 1.08003 * 125.89521 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 8 6.0358 -4.0052 -0.0002 13 6 7.3665 -4.1810 0.0005 14 8 8.1024 -3.2228 0.0000 15 6 7.9425 -5.5736 0.0007 16 6 9.4705 -5.4934 0.0021 17 7 10.0305 -6.8472 0.0029 18 6 10.9139 -7.3421 -0.8907 19 6 11.1798 -8.6227 -0.5415 20 17 12.2557 -9.7048 -1.3691 21 6 10.4340 -8.9199 0.6045 22 7 9.7492 -7.8547 0.9346 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6803 0.8889 25 1 3.8746 -0.6798 -0.8911 26 1 3.6580 -3.1504 -0.8907 27 1 3.6587 -3.1501 0.8891 28 1 5.9149 -2.1224 0.8890 29 1 5.9150 -2.1224 -0.8909 30 1 7.6071 -6.1057 -0.8895 31 1 7.6062 -6.1058 0.8904 32 1 9.8072 -4.9611 -0.8875 33 1 9.8055 -4.9615 0.8925 34 1 11.3325 -6.8116 -1.7331 35 1 10.4281 -9.8640 1.1290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919570888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:03 Heat of formation + Delta-G solvation = -29.304551 kcal Electronic energy + Delta-G solvation = -18796.418936 eV Core-core repulsion = 15436.067910 eV Total energy + Delta-G solvation = -3360.351026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.75406 -40.50386 -36.98781 -36.77395 -34.76638 -34.14887 -31.94613 -31.16989 -29.95450 -27.72030 -25.41700 -23.08789 -21.71166 -21.56629 -20.70099 -20.20340 -18.29780 -17.26869 -16.97113 -16.86804 -16.29393 -15.71946 -15.16565 -14.70539 -14.56475 -14.25034 -13.86001 -13.68002 -13.27477 -12.91350 -12.74922 -12.48746 -12.18030 -11.98225 -11.90301 -11.73975 -11.12969 -11.03498 -10.90597 -10.79032 -10.54015 -10.10264 -10.03575 -9.87502 -9.77901 -9.29568 -8.89523 -8.60689 -6.10667 -4.10079 1.23438 1.44817 2.04423 2.13618 2.26578 2.72041 3.26376 3.34313 3.37012 3.96800 4.18316 4.26011 4.39135 4.45474 4.65739 4.81612 4.91151 5.10103 5.19127 5.22219 5.29907 5.36431 5.38414 5.76866 5.88095 6.22739 6.29570 6.31666 6.55472 6.72263 7.04970 7.15057 7.26548 7.61386 7.70878 8.45587 8.93436 9.50500 11.02417 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.056815 B = 0.002055 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.708021 B =13621.852533 C =13828.425494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.066 3.934 12 O -0.352 6.352 13 C 0.466 3.534 14 O -0.515 6.515 15 C -0.129 4.129 16 C 0.148 3.852 17 N -0.364 5.364 18 C 0.078 3.922 19 C -0.191 4.191 20 Cl -0.043 7.043 21 C 0.066 3.934 22 N -0.279 5.279 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.185 0.815 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.895 -17.148 -1.848 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.140 4.140 11 C -0.007 4.007 12 O -0.268 6.268 13 C 0.309 3.691 14 O -0.405 6.405 15 C -0.168 4.168 16 C 0.027 3.973 17 N -0.146 5.146 18 C -0.070 4.070 19 C -0.229 4.229 20 Cl -0.015 7.015 21 C -0.121 4.121 22 N -0.099 5.099 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.202 0.798 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 24.103 -16.130 -1.085 29.022 hybrid contribution 1.040 0.611 -0.715 1.402 sum 25.143 -15.519 -1.800 29.602 Atomic orbital electron populations 1.69902 1.06278 1.27019 1.50697 1.25024 0.94770 0.99194 0.94444 0.86779 0.80353 0.83580 0.78589 1.20199 1.21244 1.19013 1.21044 0.89001 0.94691 1.51349 0.90781 1.19520 0.97592 0.90977 0.96683 1.21579 0.88604 1.00890 1.02936 1.23562 0.97212 0.77678 1.02241 1.86503 1.22855 1.34683 1.82763 1.23133 0.81815 0.91498 0.72684 1.90686 1.60666 1.43187 1.45916 1.21543 0.94401 0.93087 1.07740 1.21568 0.92322 0.77119 1.06285 1.48510 1.33895 1.11623 1.20598 1.22323 0.94287 0.94137 0.96271 1.20791 1.07084 0.93235 1.01800 1.98336 1.62855 1.62732 1.77583 1.23935 0.94600 0.98462 0.95102 1.77525 1.23280 0.96192 1.12949 0.92604 0.96264 0.96709 0.91478 0.91425 0.91330 0.91352 0.86940 0.86063 0.87019 0.87992 0.79788 0.79058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 10 C -0.10 -1.97 5.53 -26.73 -0.15 -2.12 16 11 C 0.07 1.08 5.47 37.16 0.20 1.28 16 12 O -0.35 -5.18 10.22 -39.24 -0.40 -5.58 16 13 C 0.47 5.76 7.96 36.00 0.29 6.05 16 14 O -0.52 -7.48 15.73 -18.75 -0.29 -7.77 16 15 C -0.13 -1.08 6.00 -27.88 -0.17 -1.25 16 16 C 0.15 1.07 5.80 -4.04 -0.02 1.05 16 17 N -0.36 -2.96 3.68 -61.32 -0.23 -3.18 16 18 C 0.08 0.54 11.43 -17.16 -0.20 0.34 16 19 C -0.19 -1.46 6.65 -39.97 -0.27 -1.73 16 20 Cl -0.04 -0.31 29.30 -51.86 -1.52 -1.83 16 21 C 0.07 0.53 12.02 -17.34 -0.21 0.32 16 22 N -0.28 -2.68 12.42 30.64 0.38 -2.29 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 25 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 29 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 30 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.11 0.63 8.03 -51.93 -0.42 0.21 16 33 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.19 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.19 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -32.61 325.71 -6.68 -39.29 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -4.57 Total: -3.98 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.06 Total: -9.59 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.93 Total: -32.19 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.70 Total: -13.35 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.52 Total: -1.83 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.61 -6.68 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919570888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.988 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds