Wall clock time and date at job start Tue Mar 31 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99857 * 2 1 4 4 H 1.48501 * 109.47158 * 270.00520 * 3 2 1 5 5 H 1.48500 * 109.46757 * 30.00137 * 3 2 1 6 6 H 1.48494 * 109.47322 * 149.99925 * 3 2 1 7 7 C 1.37881 * 120.00634 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99180 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00041 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47556 * 180.02562 * 10 9 7 12 12 O 1.45197 * 109.47459 * 179.97438 * 11 10 9 13 13 C 1.34225 * 117.00038 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99990 * 180.02562 * 13 12 11 16 16 C 1.53006 * 109.47184 * 180.02562 * 15 13 12 17 17 N 1.46504 * 109.46883 * 179.97438 * 16 15 13 18 18 C 1.35048 * 126.03754 * 125.00366 * 17 16 15 19 19 C 1.35371 * 107.72804 * 179.97438 * 18 17 16 20 20 Cl 1.73596 * 126.04419 * 179.97438 * 19 18 17 21 21 C 1.39921 * 107.90854 * 359.97438 * 19 18 17 22 22 N 1.30859 * 108.21521 * 359.75849 * 21 19 18 23 23 H 0.96994 * 120.00307 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47423 * 60.00683 * 9 7 2 25 25 H 1.08998 * 109.47773 * 299.99976 * 9 7 2 26 26 H 1.09004 * 109.47100 * 59.99864 * 10 9 7 27 27 H 1.08998 * 109.47380 * 300.00833 * 10 9 7 28 28 H 1.09001 * 109.46610 * 59.99808 * 11 10 9 29 29 H 1.09004 * 109.46701 * 300.00707 * 11 10 9 30 30 H 1.09001 * 109.47612 * 60.00096 * 15 13 12 31 31 H 1.09001 * 109.47122 * 299.99927 * 15 13 12 32 32 H 1.09001 * 109.47002 * 299.99404 * 16 15 13 33 33 H 1.08993 * 109.46955 * 59.99842 * 16 15 13 34 34 H 1.07999 * 126.12993 * 359.93388 * 18 17 16 35 35 H 1.08003 * 125.89521 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 8 6.0358 -4.0052 -0.0002 13 6 7.3665 -4.1810 0.0005 14 8 8.1024 -3.2228 0.0000 15 6 7.9425 -5.5736 0.0007 16 6 9.4705 -5.4934 0.0021 17 7 10.0305 -6.8472 0.0029 18 6 10.9139 -7.3421 -0.8907 19 6 11.1798 -8.6227 -0.5415 20 17 12.2557 -9.7048 -1.3691 21 6 10.4340 -8.9199 0.6045 22 7 9.7492 -7.8547 0.9346 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6803 0.8889 25 1 3.8746 -0.6798 -0.8911 26 1 3.6580 -3.1504 -0.8907 27 1 3.6587 -3.1501 0.8891 28 1 5.9149 -2.1224 0.8890 29 1 5.9150 -2.1224 -0.8909 30 1 7.6071 -6.1057 -0.8895 31 1 7.6062 -6.1058 0.8904 32 1 9.8072 -4.9611 -0.8875 33 1 9.8055 -4.9615 0.8925 34 1 11.3325 -6.8116 -1.7331 35 1 10.4281 -9.8640 1.1290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919570888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:02 Heat of formation + Delta-G solvation = -48.542195 kcal Electronic energy + Delta-G solvation = -18797.253143 eV Core-core repulsion = 15436.067910 eV Total energy + Delta-G solvation = -3361.185233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.32741 -41.54943 -38.07431 -37.36763 -35.95012 -35.42937 -33.88698 -31.84460 -30.61323 -29.37865 -26.29082 -24.65026 -22.41147 -22.21516 -22.07151 -21.36145 -19.14085 -18.95019 -18.03337 -17.95525 -17.31732 -16.53454 -16.30402 -15.91770 -15.58560 -15.23545 -14.82058 -14.75273 -14.32140 -14.24541 -13.85599 -13.81723 -13.49279 -12.87675 -12.79348 -12.59671 -12.49286 -12.31231 -12.15425 -12.03227 -11.77284 -11.54503 -11.46378 -11.40794 -11.36478 -10.78375 -10.63507 -9.45370 -8.30909 -6.36249 0.68088 0.88391 1.06463 1.36463 1.38291 1.49801 1.56333 1.58110 1.89731 2.35037 3.04141 3.37617 3.47014 3.75085 3.83664 3.97811 4.00476 4.01066 4.21936 4.32662 4.38037 4.58010 4.62913 4.69971 4.73189 4.75038 4.94586 5.30714 5.35262 5.47867 5.49918 5.61697 5.77792 6.24711 6.48401 6.59518 6.72046 7.28279 8.85596 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.056815 B = 0.002055 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.708021 B =13621.852533 C =13828.425494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.535 4.535 8 H 0.034 0.966 9 C -0.009 4.009 10 C -0.095 4.095 11 C 0.075 3.925 12 O -0.361 6.361 13 C 0.469 3.531 14 O -0.535 6.535 15 C -0.116 4.116 16 C 0.150 3.850 17 N -0.369 5.369 18 C 0.084 3.916 19 C -0.205 4.205 20 Cl -0.041 7.041 21 C 0.064 3.936 22 N -0.313 5.313 23 H 0.267 0.733 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.214 0.786 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.397 -16.814 -2.378 32.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.052 0.948 9 C -0.047 4.047 10 C -0.132 4.132 11 C 0.002 3.998 12 O -0.277 6.277 13 C 0.313 3.687 14 O -0.425 6.425 15 C -0.154 4.154 16 C 0.030 3.970 17 N -0.151 5.151 18 C -0.064 4.064 19 C -0.243 4.243 20 Cl -0.013 7.013 21 C -0.123 4.123 22 N -0.134 5.134 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.115 0.885 34 H 0.231 0.769 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 26.627 -15.826 -1.613 31.017 hybrid contribution 0.249 0.374 -0.558 0.716 sum 26.877 -15.451 -2.170 31.077 Atomic orbital electron populations 1.70061 1.08327 1.28272 1.52342 1.26041 0.95669 1.03637 0.94033 0.85640 0.79525 0.78063 0.79329 1.18989 1.21017 1.16816 1.21414 0.91814 0.93304 1.50791 0.94765 1.19449 0.94210 0.93741 0.97281 1.21334 0.91054 0.98349 1.02510 1.23204 0.94952 0.78841 1.02805 1.86488 1.24546 1.33443 1.83242 1.23787 0.80628 0.92746 0.71513 1.90680 1.60720 1.44236 1.46849 1.21539 0.95065 0.90370 1.08467 1.21595 0.91345 0.76996 1.07083 1.48547 1.34265 1.11601 1.20684 1.22826 0.93245 0.93985 0.96314 1.20933 1.07549 0.93776 1.02081 1.98336 1.62772 1.62731 1.77488 1.24315 0.93988 0.98800 0.95209 1.77485 1.24645 0.97059 1.14213 0.92407 0.95584 0.95560 0.91871 0.92054 0.90964 0.90604 0.85371 0.85990 0.85041 0.88513 0.76912 0.77359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 2 C 0.00 0.18 5.47 84.66 0.46 0.65 16 3 Si 0.95 43.48 27.47 68.60 1.88 45.36 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.54 -30.54 9.66 25.60 0.25 -30.30 16 8 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.09 -3.58 5.53 30.59 0.17 -3.41 16 11 C 0.08 2.33 5.47 71.98 0.39 2.72 16 12 O -0.36 -10.02 10.22 -51.37 -0.53 -10.54 16 13 C 0.47 10.67 7.96 71.24 0.57 11.23 16 14 O -0.53 -14.40 15.73 21.97 0.35 -14.06 16 15 C -0.12 -1.70 6.00 29.85 0.18 -1.52 16 16 C 0.15 1.85 5.80 86.38 0.50 2.35 16 17 N -0.37 -5.25 3.68 -347.92 -1.28 -6.53 16 18 C 0.08 0.96 11.43 83.54 0.95 1.91 16 19 C -0.20 -2.79 6.65 22.02 0.15 -2.64 16 20 Cl -0.04 -0.53 29.30 -2.72 -0.08 -0.61 16 21 C 0.06 0.93 12.02 85.25 1.02 1.95 16 22 N -0.31 -5.61 12.42 -56.98 -0.71 -6.32 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 25 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 26 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 2.19 8.13 -2.39 -0.02 2.17 16 29 H 0.08 2.24 8.13 -2.39 -0.02 2.22 16 30 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.13 1.09 8.03 -2.39 -0.02 1.07 16 33 H 0.10 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.21 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -70.59 325.71 5.74 -64.85 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.03 Total: 4.17 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 4.77 Total: -17.36 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -1.69 Total: -71.82 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.18 Total: -24.60 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -70.59 5.74 -64.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919570888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.313 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds