Wall clock time and date at job start Tue Mar 31 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 186.42530 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46504 * 114.39066 * 272.67505 * 11 10 9 13 13 C 1.34778 * 119.99900 * 248.58307 * 12 11 10 14 14 O 1.21611 * 120.00188 * 0.02562 * 13 12 11 15 15 C 1.47383 * 119.99712 * 179.97438 * 13 12 11 16 16 C 1.36407 * 127.19361 * 359.68913 * 15 13 12 17 17 O 1.33654 * 108.39459 * 179.89132 * 16 15 13 18 18 C 1.34207 * 110.91334 * 0.38746 * 17 16 15 19 19 C 1.50700 * 125.44109 * 179.76305 * 18 17 16 20 20 F 1.39893 * 109.47405 * 29.99688 * 19 18 17 21 21 F 1.39901 * 109.47127 * 150.00415 * 19 18 17 22 22 C 1.34181 * 109.12047 * 359.76238 * 18 17 16 23 23 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 24 24 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 26 26 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 27 27 H 1.09002 * 114.27057 * 139.79527 * 11 10 9 28 28 H 0.96994 * 120.00205 * 68.58951 * 12 11 10 29 29 H 1.08004 * 125.80324 * 0.02562 * 16 15 13 30 30 H 1.09004 * 109.46475 * 269.99934 * 19 18 17 31 31 H 1.08004 * 127.02161 * 180.02562 * 22 18 17 32 32 H 1.08996 * 113.46819 * 321.85844 * 23 9 7 33 33 H 1.09006 * 113.46873 * 92.30541 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 0.8294 -3.9921 -2.4297 13 6 0.0975 -4.6642 -3.3404 14 8 -0.8426 -5.3468 -2.9810 15 6 0.4360 -4.5710 -4.7718 16 6 1.4471 -3.8489 -5.3347 17 8 1.4135 -4.0364 -6.6576 18 6 0.4064 -4.8548 -7.0000 19 6 0.0666 -5.2819 -8.4047 20 9 1.2316 -5.3090 -9.1786 21 9 -0.5058 -6.5582 -8.3784 22 6 -0.2495 -5.2320 -5.8919 23 6 1.6717 -3.8136 -0.0623 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6458 -2.9419 0.5050 26 1 -0.5617 -2.1435 -1.1235 27 1 -0.0846 -4.9747 -0.7576 28 1 1.5790 -3.4475 -2.7164 29 1 2.1559 -3.2324 -4.8018 30 1 -0.6411 -4.5751 -8.8381 31 1 -1.1059 -5.8876 -5.8346 32 1 2.6415 -4.0509 -0.4996 33 1 1.5398 -4.2434 0.9307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030850841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:47 Heat of formation + Delta-G solvation = -55.418181 kcal Electronic energy + Delta-G solvation = -21828.206133 eV Core-core repulsion = 17914.926054 eV Total energy + Delta-G solvation = -3913.280078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.44650 -47.47201 -42.83582 -39.47666 -37.61638 -33.53091 -33.10182 -32.07086 -31.14019 -27.71827 -26.24466 -24.68768 -24.36612 -22.76109 -21.44943 -20.15720 -19.42312 -18.60341 -18.08103 -17.46376 -16.86057 -16.43181 -16.24938 -16.00182 -15.38487 -14.97092 -14.36893 -14.31427 -14.00729 -13.82866 -13.79463 -13.52743 -13.14455 -12.88833 -12.70800 -12.65113 -11.82925 -11.66683 -11.40000 -10.92622 -10.67497 -10.31436 -10.04774 -10.00645 -9.82084 -9.48382 -9.13896 -8.89950 -8.44584 -6.99836 -5.86846 -3.19602 1.10563 1.62639 2.14156 3.23758 3.32226 3.37289 3.39896 3.46517 3.52892 3.78311 4.30928 4.37343 4.39147 4.49743 4.74448 5.11369 5.25705 5.29597 5.38024 5.46411 5.58120 5.92481 6.08308 6.15909 6.32137 6.45506 6.58274 6.71978 7.11803 7.22969 7.46266 7.84977 7.90494 8.49459 8.93642 9.60690 10.54044 11.31046 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.003656 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.801906 B = 7657.017054 C = 8439.770331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.082 0.918 9 N -0.608 5.608 10 C 0.149 3.851 11 C 0.084 3.916 12 N -0.684 5.684 13 C 0.585 3.415 14 O -0.543 6.543 15 C -0.228 4.228 16 C 0.047 3.953 17 O -0.155 6.155 18 C -0.113 4.113 19 C 0.367 3.633 20 F -0.192 7.192 21 F -0.184 7.184 22 C -0.103 4.103 23 C 0.108 3.892 24 H 0.255 0.745 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.402 0.598 29 H 0.223 0.777 30 H 0.140 0.860 31 H 0.168 0.832 32 H 0.044 0.956 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 -9.460 -15.182 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.022 3.978 11 C -0.022 4.022 12 N -0.333 5.333 13 C 0.372 3.628 14 O -0.422 6.422 15 C -0.233 4.233 16 C -0.024 4.024 17 O -0.050 6.050 18 C -0.163 4.163 19 C 0.313 3.687 20 F -0.173 7.173 21 F -0.165 7.165 22 C -0.123 4.123 23 C -0.019 4.019 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.237 0.763 29 H 0.239 0.761 30 H 0.157 0.843 31 H 0.186 0.814 32 H 0.062 0.938 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.941 -9.488 -15.126 17.880 hybrid contribution 0.745 1.190 0.348 1.446 sum 1.686 -8.298 -14.778 17.032 Atomic orbital electron populations 1.69856 1.05084 1.25548 1.55645 1.24845 0.95610 0.97662 1.02029 0.86127 0.78658 0.83473 0.77614 1.21564 1.20488 1.21597 1.18940 0.90362 0.81506 1.44496 0.90052 1.45875 1.05481 0.99184 1.82982 1.22498 0.88688 0.89778 0.96825 1.22699 0.99519 1.00524 0.79504 1.45283 1.33115 1.48350 1.06563 1.17100 0.82444 0.79727 0.83578 1.90766 1.29040 1.41495 1.80893 1.21631 1.00733 1.05800 0.95133 1.24795 0.99075 0.98719 0.79833 1.83727 1.43647 1.52976 1.24698 1.22531 0.94568 1.02438 0.96721 1.19515 0.82935 0.82733 0.83516 1.93049 1.51304 1.96718 1.76214 1.93068 1.84468 1.42352 1.96617 1.22568 1.00854 1.00029 0.88856 1.22782 0.95706 0.87377 0.96058 0.93525 0.94217 0.91715 0.88266 0.76337 0.76058 0.84325 0.81398 0.93778 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 11.81 55.49 0.66 -25.92 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 21.27 29.56 -169.99 -5.02 16.24 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.00 10.73 -15.06 -0.16 -6.16 16 8 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 9 N -0.61 -14.68 3.76 -184.62 -0.69 -15.38 16 10 C 0.15 3.43 7.06 -8.37 -0.06 3.37 16 11 C 0.08 1.56 4.62 -67.68 -0.31 1.24 16 12 N -0.68 -11.38 5.39 -54.57 -0.29 -11.68 16 13 C 0.58 9.86 7.81 -12.54 -0.10 9.76 16 14 O -0.54 -10.90 16.57 5.27 0.09 -10.82 16 15 C -0.23 -3.14 6.31 -103.28 -0.65 -3.79 16 16 C 0.05 0.52 11.61 30.07 0.35 0.86 16 17 O -0.16 -1.76 10.50 7.67 0.08 -1.68 16 18 C -0.11 -1.22 6.90 -35.74 -0.25 -1.47 16 19 C 0.37 2.97 5.82 36.01 0.21 3.18 16 20 F -0.19 -1.89 17.30 2.25 0.04 -1.85 16 21 F -0.18 -1.71 17.01 2.25 0.04 -1.68 16 22 C -0.10 -1.27 10.54 -37.45 -0.39 -1.66 16 23 C 0.11 2.06 8.44 -8.51 -0.07 1.99 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.67 7.57 -51.93 -0.39 1.27 16 27 H 0.10 1.80 7.45 -51.93 -0.39 1.41 16 28 H 0.40 6.05 7.73 -40.82 -0.32 5.74 16 29 H 0.22 1.76 7.47 -52.48 -0.39 1.37 16 30 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.17 1.92 8.06 -52.48 -0.42 1.50 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -33.28 305.56 -5.19 -38.47 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.15 Total: 2.55 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.53 Total: 7.13 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.33 Total: -52.98 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.17 Total: -12.50 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.08 Total: -3.52 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.28 -5.19 -38.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030850841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.951 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds