Wall clock time and date at job start Tue Mar 31 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 186.42530 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46504 * 114.39066 * 272.67505 * 11 10 9 13 13 C 1.34778 * 119.99900 * 248.58307 * 12 11 10 14 14 O 1.21611 * 120.00188 * 0.02562 * 13 12 11 15 15 C 1.47383 * 119.99712 * 179.97438 * 13 12 11 16 16 C 1.36407 * 127.19361 * 359.68913 * 15 13 12 17 17 O 1.33654 * 108.39459 * 179.89132 * 16 15 13 18 18 C 1.34207 * 110.91334 * 0.38746 * 17 16 15 19 19 C 1.50700 * 125.44109 * 179.76305 * 18 17 16 20 20 F 1.39893 * 109.47405 * 29.99688 * 19 18 17 21 21 F 1.39901 * 109.47127 * 150.00415 * 19 18 17 22 22 C 1.34181 * 109.12047 * 359.76238 * 18 17 16 23 23 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 24 24 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 26 26 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 27 27 H 1.09002 * 114.27057 * 139.79527 * 11 10 9 28 28 H 0.96994 * 120.00205 * 68.58951 * 12 11 10 29 29 H 1.08004 * 125.80324 * 0.02562 * 16 15 13 30 30 H 1.09004 * 109.46475 * 269.99934 * 19 18 17 31 31 H 1.08004 * 127.02161 * 180.02562 * 22 18 17 32 32 H 1.08996 * 113.46819 * 321.85844 * 23 9 7 33 33 H 1.09006 * 113.46873 * 92.30541 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 0.8294 -3.9921 -2.4297 13 6 0.0975 -4.6642 -3.3404 14 8 -0.8426 -5.3468 -2.9810 15 6 0.4360 -4.5710 -4.7718 16 6 1.4471 -3.8489 -5.3347 17 8 1.4135 -4.0364 -6.6576 18 6 0.4064 -4.8548 -7.0000 19 6 0.0666 -5.2819 -8.4047 20 9 1.2316 -5.3090 -9.1786 21 9 -0.5058 -6.5582 -8.3784 22 6 -0.2495 -5.2320 -5.8919 23 6 1.6717 -3.8136 -0.0623 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6458 -2.9419 0.5050 26 1 -0.5617 -2.1435 -1.1235 27 1 -0.0846 -4.9747 -0.7576 28 1 1.5790 -3.4475 -2.7164 29 1 2.1559 -3.2324 -4.8018 30 1 -0.6411 -4.5751 -8.8381 31 1 -1.1059 -5.8876 -5.8346 32 1 2.6415 -4.0509 -0.4996 33 1 1.5398 -4.2434 0.9307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030850841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:47 Heat of formation + Delta-G solvation = -78.595099 kcal Electronic energy + Delta-G solvation = -21829.211159 eV Core-core repulsion = 17914.926054 eV Total energy + Delta-G solvation = -3914.285105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.13077 -48.16604 -43.75703 -40.96158 -39.20723 -35.06235 -34.25060 -33.71055 -32.15409 -29.56425 -27.05043 -26.40116 -25.77664 -24.34373 -22.37853 -21.34901 -20.97860 -19.61809 -18.74935 -18.72946 -18.16815 -17.51641 -17.14893 -17.04846 -16.91436 -16.70829 -15.82949 -15.57125 -15.37917 -15.00154 -14.62878 -14.54091 -14.47414 -14.27412 -13.92567 -13.66438 -13.37290 -13.24637 -12.78568 -12.53066 -12.41612 -12.12515 -11.79742 -11.29778 -11.25520 -11.05797 -10.88103 -10.10570 -9.89222 -8.96233 -7.91756 -5.25138 0.16664 0.63906 1.33652 1.48427 1.49244 1.58742 2.03256 2.23048 2.47817 2.75376 3.07525 3.30748 3.43904 3.45581 3.62922 3.80358 3.83227 3.90648 4.16033 4.38375 4.48184 4.55685 4.73168 4.81045 4.89620 4.99683 5.07316 5.21348 5.47148 5.65158 5.68599 5.88322 6.55806 6.88619 7.16878 7.59889 8.59111 9.26776 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.003656 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.801906 B = 7657.017054 C = 8439.770331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.292 1.292 5 H -0.260 1.260 6 H -0.298 1.298 7 C -0.227 4.227 8 H 0.093 0.907 9 N -0.631 5.631 10 C 0.145 3.855 11 C 0.108 3.892 12 N -0.680 5.680 13 C 0.587 3.413 14 O -0.582 6.582 15 C -0.262 4.262 16 C 0.073 3.927 17 O -0.155 6.155 18 C -0.106 4.106 19 C 0.368 3.632 20 F -0.201 7.201 21 F -0.192 7.192 22 C -0.120 4.120 23 C 0.116 3.884 24 H 0.247 0.753 25 H 0.025 0.975 26 H 0.028 0.972 27 H 0.108 0.892 28 H 0.411 0.589 29 H 0.253 0.747 30 H 0.187 0.813 31 H 0.169 0.831 32 H 0.070 0.930 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -9.603 -16.539 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.220 1.220 5 H -0.184 1.184 6 H -0.225 1.225 7 C -0.355 4.355 8 H 0.111 0.889 9 N -0.358 5.358 10 C 0.017 3.983 11 C 0.002 3.998 12 N -0.329 5.329 13 C 0.376 3.624 14 O -0.463 6.463 15 C -0.267 4.267 16 C 0.001 3.999 17 O -0.050 6.050 18 C -0.155 4.155 19 C 0.315 3.685 20 F -0.182 7.182 21 F -0.173 7.173 22 C -0.140 4.140 23 C -0.010 4.010 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.125 0.875 28 H 0.247 0.753 29 H 0.269 0.731 30 H 0.203 0.797 31 H 0.187 0.813 32 H 0.088 0.912 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.809 -9.662 -16.505 19.330 hybrid contribution 0.193 1.167 0.758 1.405 sum 3.002 -8.495 -15.747 18.142 Atomic orbital electron populations 1.70053 1.06774 1.25635 1.57907 1.25663 0.96316 1.01045 1.02811 0.85071 0.78102 0.79123 0.77061 1.21957 1.18401 1.22519 1.19390 0.91137 0.82521 1.42405 0.88895 1.46126 1.05950 1.00672 1.83066 1.22458 0.88385 0.91573 0.95854 1.22350 0.98729 0.98177 0.80586 1.45201 1.33410 1.48558 1.05760 1.17482 0.81501 0.78634 0.84736 1.90739 1.30674 1.43181 1.81747 1.21436 1.03034 1.08559 0.93638 1.25291 0.97923 0.96977 0.79660 1.83770 1.43686 1.52891 1.24650 1.22984 0.93550 1.01319 0.97656 1.20038 0.83281 0.83129 0.82094 1.93031 1.52193 1.96762 1.76207 1.93055 1.84484 1.43220 1.96533 1.22655 1.01557 1.00720 0.89082 1.22879 0.96951 0.84246 0.96880 0.94428 0.95724 0.95313 0.87451 0.75274 0.73099 0.79652 0.81338 0.91225 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.80 11.81 21.65 0.26 -56.54 16 2 C -0.07 -3.55 5.50 84.86 0.47 -3.09 16 3 Si 0.98 43.65 29.56 68.60 2.03 45.67 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.23 -11.83 10.73 84.04 0.90 -10.93 16 8 H 0.09 4.53 7.84 -2.91 -0.02 4.51 16 9 N -0.63 -30.07 3.76 -738.02 -2.78 -32.85 16 10 C 0.14 6.78 7.06 83.27 0.59 7.37 16 11 C 0.11 3.95 4.62 45.55 0.21 4.16 16 12 N -0.68 -21.93 5.39 -444.82 -2.40 -24.32 16 13 C 0.59 19.56 7.81 86.65 0.68 20.23 16 14 O -0.58 -23.57 16.57 -4.06 -0.07 -23.64 16 15 C -0.26 -6.91 6.31 -18.99 -0.12 -7.03 16 16 C 0.07 1.43 11.61 67.39 0.78 2.22 16 17 O -0.16 -3.13 10.50 4.53 0.05 -3.08 16 18 C -0.11 -2.06 6.90 24.76 0.17 -1.89 16 19 C 0.37 5.02 5.82 71.24 0.41 5.44 16 20 F -0.20 -3.48 17.30 44.97 0.78 -2.70 16 21 F -0.19 -3.23 17.01 44.97 0.76 -2.47 16 22 C -0.12 -2.84 10.54 23.65 0.25 -2.60 16 23 C 0.12 4.20 8.44 83.18 0.70 4.91 16 24 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.03 1.53 7.57 -2.39 -0.02 1.51 16 27 H 0.11 3.81 7.45 -2.39 -0.02 3.79 16 28 H 0.41 11.62 7.73 -92.71 -0.72 10.91 16 29 H 0.25 3.16 7.47 -2.91 -0.02 3.14 16 30 H 0.19 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.17 3.84 8.06 -2.91 -0.02 3.81 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -72.87 305.56 4.13 -68.75 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.45 Total: 12.38 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 5.04 Total: 18.80 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -4.92 Total: -113.72 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.02 Total: -26.72 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 1.54 Total: -5.17 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -72.87 4.13 -68.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030850841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.848 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds