Wall clock time and date at job start Tue Mar 31 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99541 * 2 1 4 4 C 1.50696 * 109.46893 * 179.97438 * 3 2 1 5 5 N 1.30872 * 125.88898 * 179.97438 * 4 3 2 6 6 C 1.33694 * 109.76981 * 180.02562 * 5 4 3 7 7 S 1.76192 * 125.61502 * 179.97438 * 6 5 4 8 8 C 1.81399 * 103.00037 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46955 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00042 * 359.72142 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47317 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00370 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99790 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99980 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99622 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47227 * 90.00070 * 17 15 13 19 19 H 1.48508 * 109.46650 * 209.99563 * 17 15 13 20 20 H 1.48499 * 109.47411 * 329.99483 * 17 15 13 21 21 N 1.31248 * 108.76318 * 0.22433 * 6 5 4 22 22 N 1.34351 * 125.88600 * 359.97438 * 4 3 2 23 23 H 0.96998 * 126.75815 * 0.02562 * 22 4 3 24 24 H 1.08999 * 109.46878 * 60.00535 * 1 2 3 25 25 H 1.09002 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47649 * 300.00367 * 1 2 3 27 27 H 1.08997 * 109.47178 * 59.99695 * 3 2 1 28 28 H 1.09002 * 109.46847 * 299.99056 * 3 2 1 29 29 H 1.09000 * 109.47234 * 60.00072 * 8 7 6 30 30 H 1.09001 * 109.47232 * 299.99583 * 8 7 6 31 31 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 32 32 H 1.09004 * 109.47212 * 300.00463 * 12 11 9 33 33 H 1.09000 * 109.46684 * 60.00307 * 12 11 9 34 34 H 0.97002 * 119.99804 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.3609 2.1830 0.0003 6 6 5.6120 1.7116 0.0005 7 16 7.0772 2.6902 -0.0004 8 6 8.3982 1.4471 0.0012 9 6 9.7377 2.1376 0.0012 10 8 9.7955 3.3490 -0.0049 11 7 10.8715 1.4089 0.0028 12 6 12.1737 2.0800 0.0022 13 6 13.2711 1.0472 0.0037 14 1 13.0235 -0.0040 0.0044 15 6 14.5915 1.4443 0.0040 16 7 14.8932 2.7244 0.0025 17 14 15.9518 0.1641 0.0050 18 1 16.3128 -0.1758 -1.3948 19 1 17.1430 0.7083 0.7052 20 1 15.4811 -1.0578 0.7055 21 7 5.5689 0.3999 -0.0039 22 7 4.2116 0.0394 0.0016 23 1 3.8501 -0.8607 0.0017 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6885 1.8465 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 8.3108 0.8229 -0.8881 30 1 8.3106 0.8249 0.8919 31 1 10.8253 0.4400 0.0035 32 1 12.2616 2.7018 -0.8887 33 1 12.2609 2.7045 0.8913 34 1 15.8221 3.0038 0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116280644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:19 Heat of formation + Delta-G solvation = 2.244566 kcal Electronic energy + Delta-G solvation = -18749.174504 eV Core-core repulsion = 15424.528007 eV Total energy + Delta-G solvation = -3324.646496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.29494 -38.82703 -38.56280 -34.28216 -32.76947 -32.49088 -32.36236 -30.05270 -28.43768 -26.82604 -26.32089 -23.27249 -22.62363 -21.42727 -19.91450 -18.71889 -17.27020 -16.90089 -16.88416 -16.37444 -16.00472 -15.80046 -15.64828 -15.12977 -15.10173 -14.26056 -13.86275 -13.38908 -13.30472 -12.90903 -12.70787 -12.49581 -11.99273 -11.98124 -11.66515 -11.00442 -10.90742 -10.87247 -10.71482 -10.65499 -10.34183 -10.16358 -9.93544 -9.43058 -9.30711 -8.77356 -7.99530 -7.64105 -6.18223 -4.25512 1.04394 1.23302 2.02124 2.46837 2.60619 2.73666 3.17474 3.24032 3.30156 3.32529 3.96290 4.10391 4.34414 4.58974 4.62754 4.65750 4.76343 4.78332 5.06082 5.15066 5.18467 5.27317 5.46480 5.54859 5.92489 6.24818 6.75303 7.23975 7.31378 7.47768 7.61250 7.64396 7.93507 8.50035 8.70572 8.96091 9.40684 10.91870 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.051083 B = 0.002394 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.996206 B =11693.973788 C =12210.916444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.400 6.400 3 C 0.142 3.858 4 C 0.292 3.708 5 N -0.512 5.512 6 C 0.200 3.800 7 S 0.108 5.892 8 C -0.156 4.156 9 C 0.518 3.482 10 O -0.539 6.539 11 N -0.703 5.703 12 C 0.250 3.750 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.319 5.319 22 N -0.462 5.462 23 H 0.446 0.554 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.393 0.607 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.272 -6.981 0.015 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.318 6.318 3 C 0.063 3.937 4 C 0.010 3.990 5 N -0.244 5.244 6 C -0.189 4.189 7 S 0.334 5.666 8 C -0.309 4.309 9 C 0.300 3.700 10 O -0.418 6.418 11 N -0.351 5.351 12 C 0.129 3.871 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.198 1.198 21 N -0.154 5.154 22 N -0.181 5.181 23 H 0.292 0.708 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.226 0.774 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -27.255 -5.081 0.011 27.724 hybrid contribution -0.033 -3.044 -0.004 3.044 sum -27.287 -8.125 0.007 28.471 Atomic orbital electron populations 1.22828 0.78689 1.03638 1.00877 1.87727 1.21613 1.26671 1.95800 1.20710 0.83073 0.85824 1.04071 1.23871 0.95552 0.82920 0.96613 1.70425 0.97818 1.30178 1.25968 1.26705 0.99071 0.92277 1.00890 1.86540 0.85921 1.02507 1.91655 1.23889 0.95953 1.02719 1.08327 1.19394 0.84503 0.87689 0.78369 1.90717 1.86945 1.13405 1.50754 1.46381 1.06888 1.10076 1.71763 1.19197 0.76416 0.93389 0.98096 1.21208 0.90783 0.92869 1.53495 0.91807 1.24954 0.98784 0.95626 0.94642 1.69974 1.19103 1.14377 1.48671 0.86395 0.81059 0.81103 0.78230 1.20445 1.20975 1.19755 1.78422 0.94551 1.13014 1.29398 1.47728 1.04016 1.09990 1.56327 0.70785 0.93197 0.88854 0.93187 0.88899 0.88889 0.86545 0.86564 0.77357 0.95175 0.95167 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.10 11.01 101.05 1.11 1.21 16 2 O -0.40 -2.33 10.22 -35.23 -0.36 -2.69 16 3 C 0.14 0.89 6.56 36.00 0.24 1.12 16 4 C 0.29 3.13 8.03 -155.73 -1.25 1.88 16 5 N -0.51 -7.21 11.21 -10.96 -0.12 -7.33 16 6 C 0.20 3.02 8.28 -90.96 -0.75 2.27 16 7 S 0.11 1.73 21.30 -107.50 -2.29 -0.56 16 8 C -0.16 -2.37 6.04 36.01 0.22 -2.16 16 9 C 0.52 10.31 7.85 -10.98 -0.09 10.22 16 10 O -0.54 -12.85 15.86 5.56 0.09 -12.76 16 11 N -0.70 -14.60 5.55 -61.47 -0.34 -14.94 16 12 C 0.25 6.54 5.43 -5.20 -0.03 6.51 16 13 C -0.55 -14.67 9.28 -34.44 -0.32 -14.99 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -25.91 13.29 55.43 0.74 -25.18 16 17 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 N -0.32 -4.50 12.36 30.13 0.37 -4.13 16 22 N -0.46 -5.03 7.27 32.61 0.24 -4.79 16 23 H 0.45 3.54 8.61 -182.34 -1.57 1.97 16 24 H 0.05 0.09 8.14 -51.93 -0.42 -0.33 16 25 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.05 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.12 1.56 8.14 -51.92 -0.42 1.14 16 30 H 0.12 1.56 8.14 -51.92 -0.42 1.13 16 31 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -34.62 321.97 -8.07 -42.68 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.25 Total: 1.35 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -0.97 Total: 7.74 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.88 Total: -56.37 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.27 Total: -15.45 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.29 Total: -0.56 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.62 -8.07 -42.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116280644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.927 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds