Wall clock time and date at job start Tue Mar 31 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99541 * 2 1 4 4 C 1.50696 * 109.46893 * 179.97438 * 3 2 1 5 5 N 1.30872 * 125.88898 * 179.97438 * 4 3 2 6 6 C 1.33694 * 109.76981 * 180.02562 * 5 4 3 7 7 S 1.76192 * 125.61502 * 179.97438 * 6 5 4 8 8 C 1.81399 * 103.00037 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46955 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00042 * 359.72142 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47317 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00370 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99790 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99980 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99622 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47227 * 90.00070 * 17 15 13 19 19 H 1.48508 * 109.46650 * 209.99563 * 17 15 13 20 20 H 1.48499 * 109.47411 * 329.99483 * 17 15 13 21 21 N 1.31248 * 108.76318 * 0.22433 * 6 5 4 22 22 N 1.34351 * 125.88600 * 359.97438 * 4 3 2 23 23 H 0.96998 * 126.75815 * 0.02562 * 22 4 3 24 24 H 1.08999 * 109.46878 * 60.00535 * 1 2 3 25 25 H 1.09002 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47649 * 300.00367 * 1 2 3 27 27 H 1.08997 * 109.47178 * 59.99695 * 3 2 1 28 28 H 1.09002 * 109.46847 * 299.99056 * 3 2 1 29 29 H 1.09000 * 109.47234 * 60.00072 * 8 7 6 30 30 H 1.09001 * 109.47232 * 299.99583 * 8 7 6 31 31 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 32 32 H 1.09004 * 109.47212 * 300.00463 * 12 11 9 33 33 H 1.09000 * 109.46684 * 60.00307 * 12 11 9 34 34 H 0.97002 * 119.99804 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.3609 2.1830 0.0003 6 6 5.6120 1.7116 0.0005 7 16 7.0772 2.6902 -0.0004 8 6 8.3982 1.4471 0.0012 9 6 9.7377 2.1376 0.0012 10 8 9.7955 3.3490 -0.0049 11 7 10.8715 1.4089 0.0028 12 6 12.1737 2.0800 0.0022 13 6 13.2711 1.0472 0.0037 14 1 13.0235 -0.0040 0.0044 15 6 14.5915 1.4443 0.0040 16 7 14.8932 2.7244 0.0025 17 14 15.9518 0.1641 0.0050 18 1 16.3128 -0.1758 -1.3948 19 1 17.1430 0.7083 0.7052 20 1 15.4811 -1.0578 0.7055 21 7 5.5689 0.3999 -0.0039 22 7 4.2116 0.0394 0.0016 23 1 3.8501 -0.8607 0.0017 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6885 1.8465 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 8.3108 0.8229 -0.8881 30 1 8.3106 0.8249 0.8919 31 1 10.8253 0.4400 0.0035 32 1 12.2616 2.7018 -0.8887 33 1 12.2609 2.7045 0.8913 34 1 15.8221 3.0038 0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116280644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:19 Heat of formation + Delta-G solvation = -24.825352 kcal Electronic energy + Delta-G solvation = -18750.348343 eV Core-core repulsion = 15424.528007 eV Total energy + Delta-G solvation = -3325.820336 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.24462 -40.55742 -38.94934 -36.21947 -34.42119 -33.70569 -33.30489 -31.55094 -29.08513 -28.66396 -26.71063 -24.72899 -24.19509 -22.33967 -21.61235 -19.69477 -18.91931 -17.82484 -17.59016 -17.46716 -17.21883 -16.98353 -16.76178 -16.59441 -16.24690 -15.92725 -15.06235 -14.61611 -14.53994 -14.08758 -13.98754 -13.65500 -13.46799 -13.21189 -12.91566 -12.71066 -12.34865 -12.23212 -11.84267 -11.82280 -11.48960 -11.25022 -11.24660 -11.05417 -10.81109 -10.64597 -9.92395 -8.85351 -8.28714 -6.45105 -0.14638 0.30085 0.90147 1.44361 1.46343 1.47404 1.55711 1.57618 1.76009 2.20800 2.29158 2.49158 3.06411 3.53652 3.67428 3.79500 3.96160 4.22949 4.25258 4.26652 4.55529 4.61884 4.63199 4.91496 4.93912 5.09657 5.24061 5.43035 5.62822 5.83362 5.87770 6.03203 6.63694 6.70068 6.74737 7.20457 7.35353 8.83292 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.051083 B = 0.002394 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.996206 B =11693.973788 C =12210.916444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.146 3.854 4 C 0.301 3.699 5 N -0.541 5.541 6 C 0.192 3.808 7 S 0.074 5.926 8 C -0.135 4.135 9 C 0.519 3.481 10 O -0.582 6.582 11 N -0.696 5.696 12 C 0.265 3.735 13 C -0.557 4.557 14 H 0.085 0.915 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.985 3.015 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.256 1.256 21 N -0.333 5.333 22 N -0.453 5.453 23 H 0.458 0.542 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.412 0.588 32 H -0.006 1.006 33 H -0.006 1.006 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.919 -9.571 0.026 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.334 6.334 3 C 0.067 3.933 4 C 0.020 3.980 5 N -0.274 5.274 6 C -0.198 4.198 7 S 0.300 5.700 8 C -0.287 4.287 9 C 0.304 3.696 10 O -0.463 6.463 11 N -0.346 5.346 12 C 0.143 3.857 13 C -0.595 4.595 14 H 0.103 0.897 15 C -0.196 4.196 16 N -0.567 5.567 17 Si 0.808 3.192 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.180 1.180 21 N -0.168 5.168 22 N -0.173 5.173 23 H 0.308 0.692 24 H 0.078 0.922 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.248 0.752 32 H 0.011 0.989 33 H 0.012 0.988 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.961 -7.738 0.021 29.977 hybrid contribution 0.291 -2.237 -0.008 2.256 sum -28.670 -9.975 0.013 30.356 Atomic orbital electron populations 1.23033 0.77006 1.04629 1.01930 1.87701 1.23323 1.26327 1.96005 1.20894 0.80136 0.86496 1.05765 1.24634 0.97134 0.81931 0.94280 1.70377 0.97876 1.31722 1.27432 1.26397 0.98951 0.92475 1.02018 1.86652 0.87264 1.03712 1.92358 1.23651 0.92351 1.02049 1.10625 1.20075 0.85792 0.87201 0.76556 1.90701 1.87817 1.15630 1.52200 1.46063 1.05539 1.10941 1.72087 1.18647 0.79281 0.93109 0.94692 1.21611 0.91061 0.93796 1.53015 0.89700 1.26050 1.01803 0.97832 0.93894 1.70133 1.19841 1.16943 1.49833 0.85157 0.77131 0.78375 0.78550 1.19662 1.21004 1.17981 1.78314 0.96476 1.12488 1.29527 1.47687 1.03036 1.10908 1.55716 0.69229 0.92154 0.87967 0.92141 0.87081 0.87074 0.84139 0.84150 0.75174 0.98852 0.98828 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.08 11.01 113.37 1.25 1.33 16 2 O -0.41 -3.74 10.22 -148.98 -1.52 -5.26 16 3 C 0.15 1.43 6.56 71.23 0.47 1.90 16 4 C 0.30 5.90 8.03 138.24 1.11 7.01 16 5 N -0.54 -14.67 11.21 -188.59 -2.11 -16.79 16 6 C 0.19 5.63 8.28 180.47 1.49 7.13 16 7 S 0.07 2.37 21.30 -56.49 -1.20 1.17 16 8 C -0.14 -3.94 6.04 71.24 0.43 -3.51 16 9 C 0.52 20.78 7.85 87.66 0.69 21.47 16 10 O -0.58 -28.71 15.86 -3.01 -0.05 -28.76 16 11 N -0.70 -29.00 5.55 -466.79 -2.59 -31.59 16 12 C 0.27 14.40 5.43 85.63 0.46 14.86 16 13 C -0.56 -29.99 9.28 25.60 0.24 -29.75 16 14 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 15 C 0.00 0.22 5.46 84.66 0.46 0.69 16 16 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 17 Si 0.98 42.16 29.54 68.60 2.03 44.19 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 21 N -0.33 -8.86 12.36 -58.59 -0.72 -9.58 16 22 N -0.45 -9.01 7.27 -50.73 -0.37 -9.38 16 23 H 0.46 6.31 8.61 -213.11 -1.84 4.48 16 24 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.06 0.05 8.14 -2.39 -0.02 0.04 16 27 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.41 13.97 8.32 -92.71 -0.77 13.20 16 32 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -76.93 321.97 -1.11 -78.04 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -1.45 Total: 12.33 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.60 Total: 21.12 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -5.51 Total: -122.82 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.57 Total: -34.02 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.20 Total: 1.17 kcal Total: -76.93 -1.11 -78.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116280644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.215 kcal (2) G-P(sol) polarization free energy of solvation -76.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds