Wall clock time and date at job start Tue Mar 31 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99690 * 2 1 4 4 H 1.48497 * 109.46949 * 270.00109 * 3 2 1 5 5 H 1.48505 * 109.46827 * 29.99770 * 3 2 1 6 6 H 1.48493 * 109.47201 * 150.00116 * 3 2 1 7 7 C 1.37869 * 120.00623 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00013 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00327 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47155 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.46838 * 179.97438 * 10 9 7 12 12 O 1.42096 * 108.57986 * 65.51436 * 11 10 9 13 13 O 1.42094 * 108.57748 * 294.48072 * 11 10 9 14 14 C 1.81408 * 101.91794 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.46885 * 180.02562 * 14 11 10 16 16 N 1.31074 * 126.65927 * 270.16813 * 15 14 11 17 17 N 1.28836 * 107.99142 * 180.24647 * 16 15 14 18 18 N 1.28744 * 109.39765 * 359.75184 * 17 16 15 19 19 N 1.29014 * 108.80459 * 359.97438 * 18 17 16 20 20 C 1.46501 * 126.43325 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.50040 * 60.02895 * 20 19 18 22 22 C 1.53002 * 60.02940 * 252.49639 * 21 20 19 23 23 H 0.97000 * 120.00503 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47124 * 60.00105 * 9 7 2 25 25 H 1.09004 * 109.47202 * 299.99882 * 9 7 2 26 26 H 1.08995 * 109.47376 * 59.99822 * 10 9 7 27 27 H 1.09004 * 109.46612 * 299.99806 * 10 9 7 28 28 H 1.08996 * 109.47326 * 60.00049 * 14 11 10 29 29 H 1.09004 * 109.46972 * 299.99946 * 14 11 10 30 30 H 1.09008 * 115.56043 * 205.71458 * 20 19 18 31 31 H 1.09002 * 117.49833 * 359.97438 * 21 20 19 32 32 H 1.09002 * 117.49953 * 144.99785 * 21 20 19 33 33 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 34 34 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 16 5.8357 -2.6361 0.0009 12 8 6.2885 -2.0779 1.2267 13 8 6.2883 -2.0779 -1.2249 14 6 6.2106 -4.4111 0.0016 15 6 7.7045 -4.6089 0.0022 16 7 8.4811 -4.7089 -1.0489 17 7 9.6901 -4.8755 -0.6360 18 7 9.7056 -4.8792 0.6513 19 7 8.5009 -4.7136 1.0822 20 6 8.0781 -4.6576 2.4838 21 6 8.6774 -3.5549 3.3589 22 6 9.1185 -5.0073 3.5507 23 1 -0.4851 0.8400 0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8753 -0.6802 -0.8889 26 1 3.6588 -3.1500 -0.8892 27 1 3.6581 -3.1503 0.8908 28 1 5.7829 -4.8731 -0.8882 29 1 5.7829 -4.8724 0.8918 30 1 7.0444 -4.9460 2.6752 31 1 9.3866 -2.8714 2.8919 32 1 8.0380 -3.1176 4.1258 33 1 10.1175 -5.2792 3.2100 34 1 8.7689 -5.5257 4.4436 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116744192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:42 Heat of formation + Delta-G solvation = 78.715629 kcal Electronic energy + Delta-G solvation = -20520.413123 eV Core-core repulsion = 17199.082661 eV Total energy + Delta-G solvation = -3321.330462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.48078 -38.25396 -36.87529 -35.92921 -34.19656 -34.06386 -33.92014 -31.62213 -29.40594 -26.15744 -25.54726 -23.42898 -22.84821 -21.76362 -21.14126 -18.89326 -18.23391 -17.74258 -17.13165 -16.32434 -16.10833 -15.95301 -15.61085 -14.88425 -14.37012 -14.35341 -13.85859 -13.64092 -12.98457 -12.89019 -12.59340 -12.33338 -12.07937 -12.02408 -11.94366 -11.87912 -11.68173 -11.49262 -11.35587 -11.32301 -11.15463 -10.61094 -10.52842 -10.27440 -10.04610 -9.71051 -9.43866 -8.73220 -6.23893 -4.26379 -0.17825 0.93692 1.50335 1.98034 2.72652 3.04742 3.14943 3.22593 3.30132 3.33916 3.67788 3.84878 3.88397 4.07455 4.20948 4.29784 4.31383 4.63036 4.81246 5.00364 5.07615 5.11205 5.18099 5.29330 5.33114 5.39374 5.48807 5.56412 5.86925 6.10684 6.71536 6.84148 7.45263 8.26898 8.31792 8.75901 9.35296 10.88131 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.004358 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.270146 B = 6423.712516 C = 6776.249187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.868 3.132 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.523 4.523 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.555 4.555 11 S 2.391 3.609 12 O -0.930 6.930 13 O -0.919 6.919 14 C -0.551 4.551 15 C 0.192 3.808 16 N -0.279 5.279 17 N -0.072 5.072 18 N -0.089 5.089 19 N -0.267 5.267 20 C 0.036 3.964 21 C -0.147 4.147 22 C -0.156 4.156 23 H 0.268 0.732 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.172 0.828 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 -11.411 7.887 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.694 3.306 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.562 4.562 8 H 0.097 0.903 9 C -0.046 4.046 10 C -0.688 4.688 11 S 2.571 3.429 12 O -0.927 6.927 13 O -0.916 6.916 14 C -0.676 4.676 15 C -0.086 4.086 16 N -0.129 5.129 17 N -0.065 5.065 18 N -0.074 5.074 19 N -0.069 5.069 20 C -0.066 4.066 21 C -0.185 4.185 22 C -0.194 4.194 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.190 0.810 29 H 0.173 0.827 30 H 0.180 0.820 31 H 0.128 0.872 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.212 -10.833 7.210 20.019 hybrid contribution -1.088 0.104 0.455 1.184 sum 14.125 -10.729 7.664 19.323 Atomic orbital electron populations 1.69867 1.06213 1.27401 1.49624 1.24955 0.94796 0.99157 0.93984 0.86945 0.80673 0.83688 0.79288 1.19562 1.20717 1.18582 1.20810 0.87546 0.95018 1.52843 0.90267 1.19467 0.99715 0.86962 0.98420 1.30035 1.17211 1.10182 1.11406 1.09392 0.81278 0.76154 0.76075 1.93563 1.80798 1.72899 1.45439 1.93610 1.80421 1.72544 1.45039 1.29375 0.91561 1.32282 1.14366 1.24501 0.95877 1.04977 0.83234 1.75132 0.97124 1.17197 1.23472 1.78662 1.12601 1.14923 1.00311 1.78819 1.02270 1.17956 1.08339 1.47884 1.04951 1.45033 1.09013 1.22529 1.00198 1.10965 0.72951 1.23536 1.02717 0.91956 1.00312 1.23517 0.99168 0.98979 0.97691 0.92256 0.94562 0.94970 0.84930 0.85107 0.80971 0.82713 0.82048 0.87240 0.85557 0.86568 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.96 55.43 0.77 -25.25 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -13.74 9.66 -34.44 -0.33 -14.07 16 8 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.14 4.05 -27.88 -0.11 -0.26 16 10 C -0.55 -8.49 5.74 37.16 0.21 -8.27 16 11 S 2.39 35.05 4.70 -107.50 -0.51 34.54 16 12 O -0.93 -15.19 18.10 -57.83 -1.05 -16.23 16 13 O -0.92 -17.33 18.10 -57.83 -1.05 -18.38 16 14 C -0.55 -5.48 6.15 36.00 0.22 -5.26 16 15 C 0.19 2.61 7.39 -155.43 -1.15 1.46 16 16 N -0.28 -4.58 12.36 32.70 0.40 -4.18 16 17 N -0.07 -1.18 13.43 60.35 0.81 -0.37 16 18 N -0.09 -1.28 12.69 60.35 0.77 -0.51 16 19 N -0.27 -3.34 3.67 -51.77 -0.19 -3.53 16 20 C 0.04 0.31 6.64 -67.89 -0.45 -0.14 16 21 C -0.15 -1.15 10.45 -26.73 -0.28 -1.43 16 22 C -0.16 -0.95 10.16 -26.69 -0.27 -1.22 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 25 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 26 H 0.13 1.75 8.14 -51.93 -0.42 1.32 16 27 H 0.13 1.61 8.14 -51.92 -0.42 1.19 16 28 H 0.17 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.15 0.80 7.35 -51.92 -0.38 0.42 16 30 H 0.16 0.84 7.41 -51.92 -0.38 0.46 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 0.81 7.85 -51.93 -0.41 0.40 16 34 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -36.87 313.46 -6.30 -43.17 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.06 Total: -2.80 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -2.26 Total: -27.23 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 2.56 Total: -33.84 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -2.09 Total: -34.61 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 16 Polarization: 35.05 SS G_CDS: -0.51 Total: 34.54 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.87 -6.30 -43.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116744192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.885 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds