Wall clock time and date at job start Tue Mar 31 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99690 * 2 1 4 4 H 1.48497 * 109.46949 * 270.00109 * 3 2 1 5 5 H 1.48505 * 109.46827 * 29.99770 * 3 2 1 6 6 H 1.48493 * 109.47201 * 150.00116 * 3 2 1 7 7 C 1.37869 * 120.00623 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00013 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00327 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47155 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.46838 * 179.97438 * 10 9 7 12 12 O 1.42096 * 108.57986 * 65.51436 * 11 10 9 13 13 O 1.42094 * 108.57748 * 294.48072 * 11 10 9 14 14 C 1.81408 * 101.91794 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.46885 * 180.02562 * 14 11 10 16 16 N 1.31074 * 126.65927 * 270.16813 * 15 14 11 17 17 N 1.28836 * 107.99142 * 180.24647 * 16 15 14 18 18 N 1.28744 * 109.39765 * 359.75184 * 17 16 15 19 19 N 1.29014 * 108.80459 * 359.97438 * 18 17 16 20 20 C 1.46501 * 126.43325 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.50040 * 60.02895 * 20 19 18 22 22 C 1.53002 * 60.02940 * 252.49639 * 21 20 19 23 23 H 0.97000 * 120.00503 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47124 * 60.00105 * 9 7 2 25 25 H 1.09004 * 109.47202 * 299.99882 * 9 7 2 26 26 H 1.08995 * 109.47376 * 59.99822 * 10 9 7 27 27 H 1.09004 * 109.46612 * 299.99806 * 10 9 7 28 28 H 1.08996 * 109.47326 * 60.00049 * 14 11 10 29 29 H 1.09004 * 109.46972 * 299.99946 * 14 11 10 30 30 H 1.09008 * 115.56043 * 205.71458 * 20 19 18 31 31 H 1.09002 * 117.49833 * 359.97438 * 21 20 19 32 32 H 1.09002 * 117.49953 * 144.99785 * 21 20 19 33 33 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 34 34 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 16 5.8357 -2.6361 0.0009 12 8 6.2885 -2.0779 1.2267 13 8 6.2883 -2.0779 -1.2249 14 6 6.2106 -4.4111 0.0016 15 6 7.7045 -4.6089 0.0022 16 7 8.4811 -4.7089 -1.0489 17 7 9.6901 -4.8755 -0.6360 18 7 9.7056 -4.8792 0.6513 19 7 8.5009 -4.7136 1.0822 20 6 8.0781 -4.6576 2.4838 21 6 8.6774 -3.5549 3.3589 22 6 9.1185 -5.0073 3.5507 23 1 -0.4851 0.8400 0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8753 -0.6802 -0.8889 26 1 3.6588 -3.1500 -0.8892 27 1 3.6581 -3.1503 0.8908 28 1 5.7829 -4.8731 -0.8882 29 1 5.7829 -4.8724 0.8918 30 1 7.0444 -4.9460 2.6752 31 1 9.3866 -2.8714 2.8919 32 1 8.0380 -3.1176 4.1258 33 1 10.1175 -5.2792 3.2100 34 1 8.7689 -5.5257 4.4436 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116744192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:41 Heat of formation + Delta-G solvation = 49.352721 kcal Electronic energy + Delta-G solvation = -20521.686394 eV Core-core repulsion = 17199.082661 eV Total energy + Delta-G solvation = -3322.603734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.51427 -38.93202 -38.10798 -37.16477 -35.85214 -35.13105 -34.87133 -33.44783 -30.37909 -27.86105 -26.47673 -24.43037 -23.44864 -23.05952 -22.36332 -20.06305 -19.29052 -18.99296 -18.47848 -17.45476 -17.26003 -17.19096 -16.31854 -16.22014 -15.92371 -15.37081 -15.01870 -14.79483 -14.44262 -13.81637 -13.78082 -13.49977 -13.33076 -13.20485 -13.13137 -13.04377 -12.87788 -12.76811 -12.64494 -12.46364 -12.19517 -11.93465 -11.73122 -11.68464 -11.48694 -11.19447 -10.83383 -10.81105 -8.33403 -6.37894 -1.31939 -0.04590 0.68169 0.87650 1.33282 1.36812 1.44822 1.65048 2.20078 2.31635 2.46863 2.79273 2.86099 3.01768 3.08301 3.34494 3.57128 3.67747 3.91016 3.94609 3.96095 4.16269 4.22487 4.33516 4.62558 4.66841 4.67883 4.92234 5.06520 5.07821 5.13662 5.18179 5.51500 6.19939 6.69626 7.24256 7.26899 8.81652 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.004358 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.270146 B = 6423.712516 C = 6776.249187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.917 3.083 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.250 1.250 7 C -0.522 4.522 8 H 0.060 0.940 9 C -0.021 4.021 10 C -0.558 4.558 11 S 2.400 3.600 12 O -0.953 6.953 13 O -0.972 6.972 14 C -0.526 4.526 15 C 0.182 3.818 16 N -0.311 5.311 17 N -0.104 5.104 18 N -0.092 5.092 19 N -0.258 5.258 20 C 0.007 3.993 21 C -0.159 4.159 22 C -0.133 4.133 23 H 0.269 0.731 24 H 0.035 0.965 25 H 0.024 0.976 26 H 0.154 0.846 27 H 0.166 0.834 28 H 0.206 0.794 29 H 0.215 0.785 30 H 0.202 0.798 31 H 0.084 0.916 32 H 0.145 0.855 33 H 0.104 0.896 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.793 -13.059 9.562 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.182 4.182 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.173 1.173 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.060 4.060 10 C -0.691 4.691 11 S 2.585 3.415 12 O -0.950 6.950 13 O -0.969 6.969 14 C -0.656 4.656 15 C -0.096 4.096 16 N -0.162 5.162 17 N -0.097 5.097 18 N -0.078 5.078 19 N -0.060 5.060 20 C -0.094 4.094 21 C -0.198 4.198 22 C -0.171 4.171 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.172 0.828 27 H 0.184 0.816 28 H 0.223 0.777 29 H 0.232 0.768 30 H 0.219 0.781 31 H 0.103 0.897 32 H 0.163 0.837 33 H 0.122 0.878 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 15.566 -12.422 8.895 21.812 hybrid contribution -1.155 0.496 0.022 1.258 sum 14.411 -11.926 8.918 20.722 Atomic orbital electron populations 1.69987 1.07740 1.28227 1.51928 1.25763 0.95474 1.02630 0.94294 0.86147 0.80041 0.80208 0.79552 1.19245 1.20131 1.17337 1.21204 0.90084 0.94056 1.50772 0.92184 1.19408 0.96992 0.91622 0.97943 1.29958 1.18363 1.06370 1.14360 1.08655 0.80234 0.78030 0.74561 1.93533 1.80665 1.75074 1.45695 1.93556 1.80856 1.75532 1.46991 1.29254 0.89775 1.27327 1.19219 1.24942 0.97056 1.04611 0.82984 1.75032 0.97545 1.18269 1.25341 1.78627 1.13222 1.16588 1.01252 1.78731 1.03516 1.17797 1.07779 1.48243 1.04113 1.43295 1.10376 1.23396 1.02833 1.11983 0.71163 1.23607 1.02950 0.92561 1.00666 1.23645 0.98107 0.97570 0.97751 0.92227 0.94652 0.95780 0.82808 0.81639 0.77692 0.76815 0.78095 0.89747 0.83705 0.87778 0.82534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.47 13.96 21.44 0.30 -55.17 16 2 C 0.02 0.95 5.47 84.65 0.46 1.41 16 3 Si 0.92 42.49 27.47 68.60 1.88 44.37 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 7 C -0.52 -27.24 9.66 25.60 0.25 -26.99 16 8 H 0.06 3.27 7.99 -2.91 -0.02 3.25 16 9 C -0.02 -0.89 4.05 29.85 0.12 -0.77 16 10 C -0.56 -15.39 5.74 71.98 0.41 -14.98 16 11 S 2.40 64.25 4.70 -56.49 -0.27 63.99 16 12 O -0.95 -28.96 18.10 -127.37 -2.30 -31.27 16 13 O -0.97 -36.00 18.10 -127.37 -2.31 -38.31 16 14 C -0.53 -8.02 6.15 71.24 0.44 -7.58 16 15 C 0.18 4.46 7.39 138.13 1.02 5.48 16 16 N -0.31 -9.90 12.36 -50.46 -0.62 -10.52 16 17 N -0.10 -3.41 13.43 37.01 0.50 -2.91 16 18 N -0.09 -2.58 12.69 37.02 0.47 -2.11 16 19 N -0.26 -5.81 3.67 -317.70 -1.17 -6.98 16 20 C 0.01 0.09 6.64 45.01 0.30 0.39 16 21 C -0.16 -2.10 10.45 30.60 0.32 -1.78 16 22 C -0.13 -1.18 10.16 30.62 0.31 -0.87 16 23 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.04 1.49 7.20 -2.39 -0.02 1.48 16 25 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 26 H 0.15 3.55 8.14 -2.39 -0.02 3.53 16 27 H 0.17 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.21 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.21 0.67 7.35 -2.39 -0.02 0.66 16 30 H 0.20 0.89 7.41 -2.38 -0.02 0.87 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 1.22 7.85 -2.39 -0.02 1.21 16 34 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -84.78 313.46 1.18 -83.60 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: 1.06 Total: 0.99 kcal Atomic # 6 Polarization: -49.32 SS G_CDS: 3.63 Total: -45.68 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -0.52 Total: -77.69 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -4.61 Total: -69.57 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.37 kcal Atomic # 16 Polarization: 64.25 SS G_CDS: -0.27 Total: 63.99 kcal Total: -84.78 1.18 -83.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116744192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.952 kcal (2) G-P(sol) polarization free energy of solvation -84.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds