Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99819 * 2 1 4 4 H 1.48502 * 109.46937 * 88.20322 * 3 2 1 5 5 H 1.48508 * 109.47020 * 208.19970 * 3 2 1 6 6 H 1.48495 * 109.47606 * 328.19945 * 3 2 1 7 7 C 1.37876 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00084 * 8.75522 * 7 2 1 9 9 C 1.50698 * 119.99770 * 188.76555 * 7 2 1 10 10 O 1.45200 * 112.84756 * 275.06281 * 9 7 2 11 11 C 1.34820 * 117.00268 * 296.82900 * 10 9 7 12 12 O 1.21555 * 119.99548 * 5.38551 * 11 10 9 13 13 C 1.47005 * 119.99825 * 185.38873 * 11 10 9 14 14 C 1.38488 * 126.88837 * 173.84925 * 13 11 10 15 15 C 1.39642 * 105.35325 * 180.02562 * 14 13 11 16 16 N 1.30874 * 107.88055 * 0.02562 * 15 14 13 17 17 N 1.28448 * 110.94081 * 359.71395 * 16 15 14 18 18 C 1.46502 * 125.19213 * 180.31617 * 17 16 15 19 19 F 1.39899 * 109.47494 * 14.20455 * 18 17 16 20 20 F 1.39905 * 109.47023 * 134.20385 * 18 17 16 21 21 C 1.53782 * 113.61870 * 143.87015 * 9 7 2 22 22 C 1.53948 * 87.01847 * 220.04757 * 21 9 7 23 23 C 1.53781 * 113.61621 * 46.25698 * 9 7 2 24 24 H 0.96998 * 120.00040 * 359.97438 * 1 2 3 25 25 H 1.08006 * 127.32391 * 0.03932 * 14 13 11 26 26 H 1.08002 * 126.05858 * 180.02562 * 15 14 13 27 27 H 1.09002 * 109.47234 * 254.20163 * 18 17 16 28 28 H 1.09005 * 113.61133 * 334.56309 * 21 9 7 29 29 H 1.08998 * 113.61508 * 105.46468 * 21 9 7 30 30 H 1.09005 * 113.53514 * 270.80249 * 22 21 9 31 31 H 1.09005 * 113.74586 * 139.94718 * 22 21 9 32 32 H 1.09000 * 113.61759 * 254.52622 * 23 9 7 33 33 H 1.08998 * 113.61571 * 25.35680 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4585 2.0684 1.3994 5 1 3.5652 1.4295 -0.6616 6 1 1.4662 2.6414 -0.7377 7 6 2.0045 -1.1941 -0.0005 8 1 1.4739 -2.1238 -0.1433 9 6 3.4983 -1.2018 0.1984 10 8 4.2324 -0.9848 -1.0354 11 6 4.0921 -1.9135 -2.0026 12 8 3.3018 -2.8258 -1.8591 13 6 4.8951 -1.8228 -3.2307 14 6 4.9545 -2.7523 -4.2556 15 6 5.8471 -2.2186 -5.1875 16 7 6.2675 -1.0676 -4.7277 17 7 5.7291 -0.8026 -3.5921 18 6 5.9740 0.4075 -2.8034 19 9 6.6134 1.3626 -3.6010 20 9 4.7554 0.9213 -2.3471 21 6 4.0051 -2.4033 1.0135 22 6 4.9739 -1.4249 1.7021 23 6 3.9696 -0.3116 1.3603 24 1 -0.4850 0.8400 0.0004 25 1 4.4233 -3.6904 -4.3204 26 1 6.1387 -2.6747 -6.1220 27 1 6.6075 0.1634 -1.9506 28 1 3.2562 -2.8218 1.6859 29 1 4.5042 -3.1612 0.4098 30 1 5.9295 -1.3241 1.1874 31 1 5.0860 -1.5985 2.7724 32 1 4.4404 0.6166 1.0362 33 1 3.2106 -0.1561 2.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118542639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = -55.192147 kcal Electronic energy + Delta-G solvation = -24093.232094 eV Core-core repulsion = 20179.961817 eV Total energy + Delta-G solvation = -3913.270277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.20885 -47.29546 -42.44557 -39.68386 -37.34682 -34.61012 -32.76257 -32.46801 -30.91656 -27.13405 -26.27953 -25.16095 -24.02614 -22.12657 -21.66186 -20.49863 -19.04548 -18.30440 -18.10461 -17.28243 -16.94539 -16.00316 -15.76454 -15.32011 -14.97265 -14.71388 -14.43075 -14.05230 -14.03627 -13.69796 -13.45724 -13.19757 -12.95905 -12.83326 -12.17571 -11.94150 -11.77406 -11.55450 -11.00605 -10.96668 -10.61277 -10.27235 -10.14085 -9.99971 -9.84869 -9.49146 -9.13340 -8.93976 -8.73766 -8.70261 -6.26126 -4.32468 1.19307 1.82232 2.54824 3.14665 3.22222 3.36937 3.45836 3.49595 3.57343 4.01781 4.31614 4.52132 4.79132 4.94066 5.10389 5.26011 5.29403 5.43685 5.53364 5.68215 5.78212 5.96427 6.13847 6.33363 6.41610 6.43440 6.48383 6.61823 6.84963 7.05025 7.28481 7.60417 7.82961 8.29719 8.61735 8.89819 9.35551 10.83772 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.007981 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.189704 B = 3507.414080 C = 3864.974164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.085 3.915 3 Si 0.863 3.137 4 H -0.278 1.278 5 H -0.229 1.229 6 H -0.295 1.295 7 C -0.515 4.515 8 H 0.087 0.913 9 C 0.196 3.804 10 O -0.360 6.360 11 C 0.530 3.470 12 O -0.467 6.467 13 C 0.008 3.992 14 C -0.154 4.154 15 C 0.011 3.989 16 N -0.268 5.268 17 N -0.337 5.337 18 C 0.499 3.501 19 F -0.173 7.173 20 F -0.146 7.146 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.132 4.132 24 H 0.268 0.732 25 H 0.172 0.828 26 H 0.194 0.806 27 H 0.159 0.841 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.961 -1.114 -3.972 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.121 4.121 3 Si 0.690 3.310 4 H -0.205 1.205 5 H -0.152 1.152 6 H -0.222 1.222 7 C -0.551 4.551 8 H 0.105 0.895 9 C 0.163 3.837 10 O -0.277 6.277 11 C 0.369 3.631 12 O -0.351 6.351 13 C -0.115 4.115 14 C -0.182 4.182 15 C -0.168 4.168 16 N -0.098 5.098 17 N -0.136 5.136 18 C 0.367 3.633 19 F -0.154 7.154 20 F -0.127 7.127 21 C -0.176 4.176 22 C -0.180 4.180 23 C -0.169 4.169 24 H 0.078 0.922 25 H 0.189 0.811 26 H 0.211 0.789 27 H 0.175 0.825 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.210 -0.176 -3.972 14.756 hybrid contribution -0.493 0.413 -0.003 0.643 sum 13.717 0.237 -3.975 14.283 Atomic orbital electron populations 1.69923 1.06644 1.27593 1.47081 1.25118 0.94677 0.99468 0.92829 0.87264 0.82307 0.82907 0.78513 1.20464 1.15212 1.22205 1.21056 0.87935 0.95542 1.50553 0.89508 1.21300 0.91254 0.93185 0.77990 1.86577 1.67782 1.47186 1.26189 1.19280 0.80379 0.81383 0.82023 1.90870 1.32085 1.33402 1.78739 1.21445 0.99726 0.91718 0.98604 1.22312 1.02109 1.01331 0.92446 1.23730 0.99181 0.92484 1.01417 1.73178 1.21006 1.18867 0.96794 1.47199 1.33826 1.16421 1.16196 1.21564 0.81732 0.74141 0.85885 1.93102 1.81430 1.64283 1.76611 1.93395 1.45747 1.85955 1.87560 1.23331 0.98230 0.96707 0.99308 1.22924 0.97293 0.97936 0.99861 1.23183 0.98683 0.96992 0.98011 0.92249 0.81074 0.78890 0.82478 0.89025 0.92684 0.91154 0.91993 0.91921 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.22 13.96 55.43 0.77 -25.45 16 2 C 0.09 2.39 5.41 -17.82 -0.10 2.29 16 3 Si 0.86 20.67 24.19 -169.99 -4.11 16.56 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.23 -5.09 3.80 56.52 0.22 -4.88 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.51 -14.15 7.94 -34.44 -0.27 -14.42 16 8 H 0.09 2.70 7.94 -52.49 -0.42 2.29 16 9 C 0.20 4.40 0.13 -90.96 -0.01 4.39 16 10 O -0.36 -7.64 6.11 -40.82 -0.25 -7.89 16 11 C 0.53 11.20 7.15 34.28 0.25 11.45 16 12 O -0.47 -11.17 15.12 -19.31 -0.29 -11.46 16 13 C 0.01 0.15 6.83 -82.08 -0.56 -0.41 16 14 C -0.15 -2.25 10.85 -38.97 -0.42 -2.67 16 15 C 0.01 0.14 12.03 -17.44 -0.21 -0.07 16 16 N -0.27 -4.07 11.53 30.58 0.35 -3.72 16 17 N -0.34 -5.47 3.72 -62.40 -0.23 -5.71 16 18 C 0.50 7.37 5.83 59.85 0.35 7.72 16 19 F -0.17 -2.50 17.12 2.25 0.04 -2.46 16 20 F -0.15 -2.68 12.63 2.25 0.03 -2.65 16 21 C -0.14 -2.71 6.97 -25.83 -0.18 -2.89 16 22 C -0.14 -2.35 8.03 -25.83 -0.21 -2.56 16 23 C -0.13 -2.59 4.85 -25.92 -0.13 -2.71 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.17 2.18 8.06 -52.48 -0.42 1.76 16 26 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.16 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 29 H 0.05 1.06 7.55 -51.93 -0.39 0.67 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.18 6.27 -51.93 -0.33 0.85 16 33 H 0.10 2.02 7.68 -51.93 -0.40 1.62 16 LS Contribution 284.79 15.07 4.29 4.29 Total: -1.00 -32.55 284.79 -4.28 -36.83 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -3.39 Total: 1.54 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.49 Total: 0.11 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.89 Total: -34.87 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.54 Total: -19.35 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.07 Total: -5.11 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.11 Total: 16.56 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.55 -4.28 -36.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118542639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.360 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds