Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99819 * 2 1 4 4 H 1.48502 * 109.46937 * 88.20322 * 3 2 1 5 5 H 1.48508 * 109.47020 * 208.19970 * 3 2 1 6 6 H 1.48495 * 109.47606 * 328.19945 * 3 2 1 7 7 C 1.37876 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00084 * 8.75522 * 7 2 1 9 9 C 1.50698 * 119.99770 * 188.76555 * 7 2 1 10 10 O 1.45200 * 112.84756 * 275.06281 * 9 7 2 11 11 C 1.34820 * 117.00268 * 296.82900 * 10 9 7 12 12 O 1.21555 * 119.99548 * 5.38551 * 11 10 9 13 13 C 1.47005 * 119.99825 * 185.38873 * 11 10 9 14 14 C 1.38488 * 126.88837 * 173.84925 * 13 11 10 15 15 C 1.39642 * 105.35325 * 180.02562 * 14 13 11 16 16 N 1.30874 * 107.88055 * 0.02562 * 15 14 13 17 17 N 1.28448 * 110.94081 * 359.71395 * 16 15 14 18 18 C 1.46502 * 125.19213 * 180.31617 * 17 16 15 19 19 F 1.39899 * 109.47494 * 14.20455 * 18 17 16 20 20 F 1.39905 * 109.47023 * 134.20385 * 18 17 16 21 21 C 1.53782 * 113.61870 * 143.87015 * 9 7 2 22 22 C 1.53948 * 87.01847 * 220.04757 * 21 9 7 23 23 C 1.53781 * 113.61621 * 46.25698 * 9 7 2 24 24 H 0.96998 * 120.00040 * 359.97438 * 1 2 3 25 25 H 1.08006 * 127.32391 * 0.03932 * 14 13 11 26 26 H 1.08002 * 126.05858 * 180.02562 * 15 14 13 27 27 H 1.09002 * 109.47234 * 254.20163 * 18 17 16 28 28 H 1.09005 * 113.61133 * 334.56309 * 21 9 7 29 29 H 1.08998 * 113.61508 * 105.46468 * 21 9 7 30 30 H 1.09005 * 113.53514 * 270.80249 * 22 21 9 31 31 H 1.09005 * 113.74586 * 139.94718 * 22 21 9 32 32 H 1.09000 * 113.61759 * 254.52622 * 23 9 7 33 33 H 1.08998 * 113.61571 * 25.35680 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4585 2.0684 1.3994 5 1 3.5652 1.4295 -0.6616 6 1 1.4662 2.6414 -0.7377 7 6 2.0045 -1.1941 -0.0005 8 1 1.4739 -2.1238 -0.1433 9 6 3.4983 -1.2018 0.1984 10 8 4.2324 -0.9848 -1.0354 11 6 4.0921 -1.9135 -2.0026 12 8 3.3018 -2.8258 -1.8591 13 6 4.8951 -1.8228 -3.2307 14 6 4.9545 -2.7523 -4.2556 15 6 5.8471 -2.2186 -5.1875 16 7 6.2675 -1.0676 -4.7277 17 7 5.7291 -0.8026 -3.5921 18 6 5.9740 0.4075 -2.8034 19 9 6.6134 1.3626 -3.6010 20 9 4.7554 0.9213 -2.3471 21 6 4.0051 -2.4033 1.0135 22 6 4.9739 -1.4249 1.7021 23 6 3.9696 -0.3116 1.3603 24 1 -0.4850 0.8400 0.0004 25 1 4.4233 -3.6904 -4.3204 26 1 6.1387 -2.6747 -6.1220 27 1 6.6075 0.1634 -1.9506 28 1 3.2562 -2.8218 1.6859 29 1 4.5042 -3.1612 0.4098 30 1 5.9295 -1.3241 1.1874 31 1 5.0860 -1.5985 2.7724 32 1 4.4404 0.6166 1.0362 33 1 3.2106 -0.1561 2.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118542639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = -77.504015 kcal Electronic energy + Delta-G solvation = -24094.199609 eV Core-core repulsion = 20179.961817 eV Total energy + Delta-G solvation = -3914.237792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.38339 -48.49547 -43.62756 -41.36009 -38.99638 -36.28198 -34.58479 -33.91367 -32.19421 -29.04468 -27.42053 -26.74338 -25.58672 -23.74734 -22.79847 -21.82066 -20.52581 -19.98435 -19.28212 -18.86193 -18.33989 -17.38648 -17.30968 -17.00787 -16.63064 -16.16659 -15.74562 -15.54995 -15.28751 -15.00746 -14.86467 -14.70354 -14.38492 -14.37609 -13.67231 -13.41317 -13.33040 -13.26038 -12.78392 -12.31232 -12.22535 -12.00298 -11.81882 -11.69766 -11.47148 -10.85165 -10.70819 -10.62460 -10.52911 -10.35356 -8.41439 -6.53032 -0.14458 0.68067 1.29716 1.36090 1.44321 1.54218 1.70752 1.95686 2.30281 2.50110 2.89730 2.99235 3.42089 3.45244 3.79106 3.89468 3.95598 4.07086 4.11053 4.29191 4.45347 4.75448 4.80665 4.90582 4.98274 5.08010 5.08963 5.27569 5.41848 5.46983 5.50002 5.80312 6.22641 6.61124 6.66993 6.94117 7.19326 8.73170 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.007981 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.189704 B = 3507.414080 C = 3864.974164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.028 3.972 3 Si 0.923 3.077 4 H -0.254 1.254 5 H -0.201 1.201 6 H -0.310 1.310 7 C -0.520 4.520 8 H 0.027 0.973 9 C 0.180 3.820 10 O -0.347 6.347 11 C 0.528 3.472 12 O -0.509 6.509 13 C -0.026 4.026 14 C -0.140 4.140 15 C 0.029 3.971 16 N -0.276 5.276 17 N -0.342 5.342 18 C 0.492 3.508 19 F -0.172 7.172 20 F -0.172 7.172 21 C -0.142 4.142 22 C -0.112 4.112 23 C -0.134 4.134 24 H 0.268 0.732 25 H 0.186 0.814 26 H 0.242 0.758 27 H 0.200 0.800 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.738 -0.432 -4.490 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.172 4.172 3 Si 0.746 3.254 4 H -0.178 1.178 5 H -0.124 1.124 6 H -0.239 1.239 7 C -0.557 4.557 8 H 0.045 0.955 9 C 0.146 3.854 10 O -0.264 6.264 11 C 0.370 3.630 12 O -0.396 6.396 13 C -0.148 4.148 14 C -0.168 4.168 15 C -0.149 4.149 16 N -0.106 5.106 17 N -0.142 5.142 18 C 0.361 3.639 19 F -0.153 7.153 20 F -0.154 7.154 21 C -0.180 4.180 22 C -0.149 4.149 23 C -0.171 4.171 24 H 0.077 0.923 25 H 0.203 0.797 26 H 0.258 0.742 27 H 0.216 0.784 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.028 0.503 -4.483 18.584 hybrid contribution -1.681 0.031 -0.010 1.681 sum 16.347 0.533 -4.493 16.962 Atomic orbital electron populations 1.70082 1.08729 1.28468 1.49955 1.26023 0.95327 1.03446 0.92409 0.86347 0.81750 0.77453 0.79842 1.17835 1.12351 1.23853 1.21155 0.91109 0.93215 1.50217 0.95459 1.21359 0.88471 0.96582 0.78978 1.86507 1.66801 1.47163 1.25952 1.19801 0.79948 0.80459 0.82778 1.90860 1.34119 1.34942 1.79693 1.21099 1.01546 0.93948 0.98250 1.22722 1.01361 1.01137 0.91605 1.24486 0.97218 0.91152 1.02064 1.73213 1.21129 1.19866 0.96383 1.47308 1.33817 1.16428 1.16646 1.22241 0.81112 0.73697 0.86891 1.93101 1.81130 1.64268 1.76792 1.93316 1.47688 1.86425 1.87929 1.23305 0.99058 0.96560 0.99094 1.22836 0.96690 0.93645 1.01747 1.23192 0.99471 0.98378 0.96048 0.92327 0.79653 0.74227 0.78367 0.90436 0.92711 0.88380 0.88970 0.90193 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.03 1.64 5.41 84.65 0.46 2.10 16 3 Si 0.92 42.88 24.19 68.60 1.66 44.54 16 4 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.20 -8.39 3.80 99.48 0.38 -8.01 16 6 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 7 C -0.52 -29.98 7.94 25.60 0.20 -29.78 16 8 H 0.03 1.84 7.94 -2.91 -0.02 1.82 16 9 C 0.18 8.05 0.13 -11.01 0.00 8.05 16 10 O -0.35 -14.38 6.11 -57.32 -0.35 -14.73 16 11 C 0.53 22.29 7.15 70.12 0.50 22.79 16 12 O -0.51 -25.22 15.12 19.66 0.30 -24.92 16 13 C -0.03 -0.88 6.83 40.75 0.28 -0.60 16 14 C -0.14 -3.74 10.85 22.67 0.25 -3.50 16 15 C 0.03 0.63 12.03 85.17 1.02 1.65 16 16 N -0.28 -7.43 11.53 -57.15 -0.66 -8.09 16 17 N -0.34 -10.23 3.72 -351.34 -1.31 -11.54 16 18 C 0.49 13.13 5.83 127.77 0.74 13.87 16 19 F -0.17 -4.48 17.12 44.97 0.77 -3.71 16 20 F -0.17 -5.98 12.63 44.97 0.57 -5.42 16 21 C -0.14 -5.50 6.97 31.18 0.22 -5.28 16 22 C -0.11 -3.26 8.03 31.18 0.25 -3.01 16 23 C -0.13 -4.92 4.85 31.12 0.15 -4.77 16 24 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 25 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 26 H 0.24 2.61 8.06 -2.91 -0.02 2.59 16 27 H 0.20 3.56 8.14 -2.39 -0.02 3.54 16 28 H 0.08 3.16 8.09 -2.38 -0.02 3.14 16 29 H 0.05 2.08 7.55 -2.39 -0.02 2.07 16 30 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.08 2.67 6.27 -2.39 -0.01 2.65 16 33 H 0.09 3.46 7.68 -2.39 -0.02 3.44 16 Total: -1.00 -76.51 284.79 6.18 -70.33 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.82 Total: 10.66 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 4.07 Total: 1.53 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -1.67 Total: -78.29 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.05 Total: -39.65 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 1.34 Total: -9.12 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.66 Total: 44.54 kcal Total: -76.51 6.18 -70.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118542639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.171 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds