Wall clock time and date at job start Tue Mar 31 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 N 1.35637 * 126.43279 * 265.02509 * 3 2 1 5 5 H 0.96996 * 124.93992 * 359.92715 * 4 3 2 6 6 N 1.28476 * 110.12888 * 179.97438 * 4 3 2 7 7 C 1.31829 * 110.13478 * 359.97438 * 6 4 3 8 8 C 1.47659 * 126.46047 * 180.02562 * 7 6 4 9 9 O 1.21573 * 120.00210 * 179.97438 * 8 7 6 10 10 N 1.34783 * 120.00000 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99817 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46998 * 179.97438 * 11 10 8 13 13 N 1.46497 * 109.47644 * 179.97438 * 12 11 10 14 14 C 1.36939 * 120.00513 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99905 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99794 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00520 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99762 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47348 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47329 * 120.00211 * 18 16 14 21 21 H 1.48506 * 109.47312 * 239.99766 * 18 16 14 22 22 C 1.35458 * 126.42896 * 84.71594 * 3 2 1 23 23 Cl 1.73603 * 127.24125 * 359.97438 * 22 3 2 24 24 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 29 29 H 0.97000 * 120.00077 * 0.02562 * 10 8 7 30 30 H 1.09000 * 109.47380 * 300.00386 * 11 10 8 31 31 H 1.08997 * 109.47062 * 60.00070 * 11 10 8 32 32 H 1.09000 * 109.47418 * 300.00421 * 12 11 10 33 33 H 1.09007 * 109.47065 * 60.00251 * 12 11 10 34 34 H 0.97004 * 119.99476 * 0.02562 * 13 12 11 35 35 H 0.96994 * 120.00417 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3901 2.1488 -1.0872 5 1 2.3629 1.8298 -2.0028 6 7 2.7711 3.3220 -0.7279 7 6 2.6920 3.4433 0.5824 8 6 3.0402 4.6392 1.3755 9 8 2.9211 4.6222 2.5853 10 7 3.4899 5.7498 0.7582 11 6 3.8359 6.9361 1.5451 12 6 4.3160 8.0468 0.6089 13 7 4.6614 9.2334 1.3957 14 6 5.1183 10.3617 0.7685 15 1 5.2244 10.3768 -0.3061 16 6 5.4460 11.4857 1.5141 17 7 5.3181 11.4670 2.8240 18 14 6.0685 13.0252 0.6585 19 1 6.1217 12.7900 -0.8067 20 1 5.1506 14.1567 0.9457 21 1 7.4287 13.3527 1.1565 22 6 2.2058 2.2127 1.0853 23 17 1.8979 1.8039 2.7441 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.5846 5.7635 -0.2071 30 1 2.9578 7.2770 2.0937 31 1 4.6296 6.6863 2.2491 32 1 5.1942 7.7057 0.0607 33 1 3.5225 8.2967 -0.0954 34 1 4.5665 9.2197 2.3609 35 1 5.5468 12.2525 3.3449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129709500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:57 Heat of formation + Delta-G solvation = 34.270875 kcal Electronic energy + Delta-G solvation = -19373.848309 eV Core-core repulsion = 16048.546872 eV Total energy + Delta-G solvation = -3325.301438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.08175 -39.20920 -36.68498 -35.62010 -34.76325 -33.77533 -32.14429 -31.09715 -29.72335 -27.79092 -24.62401 -24.25255 -23.01296 -21.49181 -21.37452 -19.98594 -18.25477 -17.35019 -16.88387 -16.32113 -15.49039 -15.25628 -15.08710 -14.70926 -14.48659 -14.24884 -13.67025 -13.57606 -13.13655 -13.00476 -12.80699 -12.34882 -12.21826 -11.73901 -11.51077 -11.39784 -11.07632 -10.82507 -10.80140 -10.77588 -10.08722 -9.96132 -9.71681 -9.71391 -9.07184 -8.94346 -8.76230 -6.95560 -5.76375 -3.06839 1.24587 1.54309 1.80319 2.61237 3.22364 3.36452 3.44489 3.49790 3.52302 4.04975 4.20215 4.38598 4.61395 4.71739 4.88644 4.95700 5.08482 5.34631 5.48726 5.53979 5.54446 5.65284 5.72316 5.82952 6.01360 6.19730 6.46339 6.52495 6.75929 6.79441 7.31236 7.69626 7.70835 8.31543 8.41428 9.52650 10.07744 10.42693 11.46352 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.040922 B = 0.002727 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.059853 B =10264.948052 C =10830.689741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C 0.030 3.970 4 N -0.375 5.375 5 H 0.451 0.549 6 N -0.243 5.243 7 C 0.011 3.989 8 C 0.594 3.406 9 O -0.516 6.516 10 N -0.708 5.708 11 C 0.111 3.889 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.101 4.101 23 Cl -0.005 7.005 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.405 0.595 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.386 0.614 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 -27.245 -8.787 30.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.096 4.096 4 N -0.090 5.090 5 H 0.297 0.703 6 N -0.078 5.078 7 C -0.152 4.152 8 C 0.377 3.623 9 O -0.389 6.389 10 N -0.359 5.359 11 C -0.012 4.012 12 C 0.016 3.984 13 N -0.375 5.375 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.138 4.138 23 Cl 0.024 6.976 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.240 0.760 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.220 0.780 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.059 -26.517 -8.791 29.368 hybrid contribution 0.154 0.298 -0.327 0.469 sum -8.905 -26.218 -9.118 29.152 Atomic orbital electron populations 1.21779 0.93522 1.02604 1.02909 1.20184 0.96872 0.87874 1.04489 1.21184 1.05247 0.96849 0.86362 1.43195 1.47675 1.08465 1.09663 0.70325 1.73672 1.17650 1.02531 1.13967 1.21986 1.07296 0.96289 0.89580 1.16742 0.78061 0.81097 0.86449 1.90856 1.53003 1.82442 1.12628 1.45762 1.65800 1.12947 1.11439 1.21635 1.01002 0.83866 0.94693 1.20754 0.97120 0.87034 0.93458 1.42198 1.79327 1.09539 1.06410 1.19240 1.35950 0.90265 0.91811 0.90978 1.24780 1.02245 0.98384 0.95538 1.69677 1.54494 1.29587 1.04135 0.86080 0.78152 0.83274 0.78430 1.20529 1.21796 1.21804 1.20501 1.10658 0.94381 0.88263 1.98367 1.94192 1.92856 1.12229 0.91633 0.91381 0.92528 0.88647 0.90061 0.76029 0.90942 0.90949 0.95696 0.95702 0.77973 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.16 0.37 -0.31 16 2 C -0.06 -0.26 6.36 -27.88 -0.18 -0.44 16 3 C 0.03 0.25 6.51 -81.90 -0.53 -0.28 16 4 N -0.37 -2.79 6.86 33.62 0.23 -2.56 16 5 H 0.45 1.49 8.96 -190.44 -1.71 -0.21 16 6 N -0.24 -2.70 11.91 33.42 0.40 -2.30 16 7 C 0.01 0.15 7.13 -82.76 -0.59 -0.44 16 8 C 0.59 9.68 7.82 -12.41 -0.10 9.58 16 9 O -0.52 -9.91 15.87 5.30 0.08 -9.82 16 10 N -0.71 -10.91 5.55 -61.31 -0.34 -11.25 16 11 C 0.11 2.00 5.79 -4.04 -0.02 1.98 16 12 C 0.14 2.93 6.37 -4.05 -0.03 2.90 16 13 N -0.73 -18.89 5.60 -59.91 -0.34 -19.23 16 14 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 15 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 18 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 C -0.10 -1.20 6.79 -39.31 -0.27 -1.47 16 23 Cl -0.01 -0.06 28.02 -51.86 -1.45 -1.52 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.41 5.41 8.19 -40.82 -0.33 5.08 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.39 10.55 7.67 -40.82 -0.31 10.23 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -34.62 324.15 -8.13 -42.75 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.71 Total: 5.34 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.59 Total: 4.04 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.68 Total: -63.21 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.45 Total: -1.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.62 -8.13 -42.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129709500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.019 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds