Wall clock time and date at job start Tue Mar 31 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 N 1.35637 * 126.43279 * 265.02509 * 3 2 1 5 5 H 0.96996 * 124.93992 * 359.92715 * 4 3 2 6 6 N 1.28476 * 110.12888 * 179.97438 * 4 3 2 7 7 C 1.31829 * 110.13478 * 359.97438 * 6 4 3 8 8 C 1.47659 * 126.46047 * 180.02562 * 7 6 4 9 9 O 1.21573 * 120.00210 * 179.97438 * 8 7 6 10 10 N 1.34783 * 120.00000 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99817 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46998 * 179.97438 * 11 10 8 13 13 N 1.46497 * 109.47644 * 179.97438 * 12 11 10 14 14 C 1.36939 * 120.00513 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99905 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99794 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00520 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99762 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47348 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47329 * 120.00211 * 18 16 14 21 21 H 1.48506 * 109.47312 * 239.99766 * 18 16 14 22 22 C 1.35458 * 126.42896 * 84.71594 * 3 2 1 23 23 Cl 1.73603 * 127.24125 * 359.97438 * 22 3 2 24 24 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 29 29 H 0.97000 * 120.00077 * 0.02562 * 10 8 7 30 30 H 1.09000 * 109.47380 * 300.00386 * 11 10 8 31 31 H 1.08997 * 109.47062 * 60.00070 * 11 10 8 32 32 H 1.09000 * 109.47418 * 300.00421 * 12 11 10 33 33 H 1.09007 * 109.47065 * 60.00251 * 12 11 10 34 34 H 0.97004 * 119.99476 * 0.02562 * 13 12 11 35 35 H 0.96994 * 120.00417 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3901 2.1488 -1.0872 5 1 2.3629 1.8298 -2.0028 6 7 2.7711 3.3220 -0.7279 7 6 2.6920 3.4433 0.5824 8 6 3.0402 4.6392 1.3755 9 8 2.9211 4.6222 2.5853 10 7 3.4899 5.7498 0.7582 11 6 3.8359 6.9361 1.5451 12 6 4.3160 8.0468 0.6089 13 7 4.6614 9.2334 1.3957 14 6 5.1183 10.3617 0.7685 15 1 5.2244 10.3768 -0.3061 16 6 5.4460 11.4857 1.5141 17 7 5.3181 11.4670 2.8240 18 14 6.0685 13.0252 0.6585 19 1 6.1217 12.7900 -0.8067 20 1 5.1506 14.1567 0.9457 21 1 7.4287 13.3527 1.1565 22 6 2.2058 2.2127 1.0853 23 17 1.8979 1.8039 2.7441 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.5846 5.7635 -0.2071 30 1 2.9578 7.2770 2.0937 31 1 4.6296 6.6863 2.2491 32 1 5.1942 7.7057 0.0607 33 1 3.5225 8.2967 -0.0954 34 1 4.5665 9.2197 2.3609 35 1 5.5468 12.2525 3.3449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129709500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:57 Heat of formation + Delta-G solvation = 7.728189 kcal Electronic energy + Delta-G solvation = -19374.999287 eV Core-core repulsion = 16048.546872 eV Total energy + Delta-G solvation = -3326.452415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.89271 -40.52139 -37.58346 -37.29680 -35.56823 -35.22228 -33.34326 -32.74283 -30.46137 -29.44698 -26.16423 -24.88996 -24.49804 -23.01024 -22.22073 -21.18489 -19.35451 -18.93288 -18.11455 -17.22912 -16.96051 -16.46756 -16.41202 -15.93458 -15.49224 -15.27391 -15.04539 -15.01935 -14.75935 -14.39999 -13.48302 -13.14814 -13.06081 -13.04678 -12.91614 -12.69407 -12.50874 -12.28048 -12.04399 -12.01619 -11.86690 -11.74312 -11.18604 -11.00460 -10.59828 -10.15144 -9.86618 -9.06468 -7.96381 -5.27949 0.29713 0.72343 1.01237 1.48757 1.50446 1.60556 1.77239 2.12005 2.17431 2.57884 3.25395 3.37801 3.47721 3.76303 3.97645 4.07506 4.20665 4.22023 4.35885 4.40828 4.54289 4.61122 4.83297 5.00543 5.05257 5.12504 5.12606 5.30690 5.38459 5.49333 5.87873 6.24466 6.35199 6.64220 7.07270 7.30710 8.01885 8.25691 9.27557 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.040922 B = 0.002727 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.059853 B =10264.948052 C =10830.689741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C 0.057 3.943 4 N -0.349 5.349 5 H 0.472 0.528 6 N -0.243 5.243 7 C -0.019 4.019 8 C 0.592 3.408 9 O -0.553 6.553 10 N -0.699 5.699 11 C 0.129 3.871 12 C 0.150 3.850 13 N -0.746 5.746 14 C -0.247 4.247 15 H 0.083 0.917 16 C -0.078 4.078 17 N -0.971 5.971 18 Si 0.980 3.020 19 H -0.262 1.262 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.129 4.129 23 Cl -0.018 7.018 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.417 0.583 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.375 0.625 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 -28.933 -11.560 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.070 4.070 4 N -0.068 5.068 5 H 0.322 0.678 6 N -0.080 5.080 7 C -0.180 4.180 8 C 0.377 3.623 9 O -0.429 6.429 10 N -0.351 5.351 11 C 0.004 3.996 12 C 0.023 3.977 13 N -0.390 5.390 14 C -0.378 4.378 15 H 0.101 0.899 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.808 3.192 19 H -0.186 1.186 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.167 4.167 23 Cl 0.011 6.989 24 H 0.063 0.937 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.135 0.865 29 H 0.253 0.747 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.207 0.793 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.319 -28.245 -11.654 31.944 hybrid contribution 0.183 0.670 0.435 0.819 sum -9.136 -27.575 -11.219 31.140 Atomic orbital electron populations 1.21779 0.93152 1.03640 1.02158 1.20401 0.96988 0.85578 1.06353 1.21628 1.02616 0.97695 0.85107 1.43325 1.45488 1.07242 1.10732 0.67763 1.73595 1.17681 1.04025 1.12695 1.21578 1.09968 0.95933 0.90503 1.17119 0.77131 0.81752 0.86309 1.90827 1.54536 1.83224 1.14341 1.45567 1.65676 1.12079 1.11774 1.21234 0.99945 0.84230 0.94159 1.20821 0.97725 0.85826 0.93345 1.42421 1.79449 1.10794 1.06313 1.19682 1.34743 0.90973 0.92412 0.89935 1.25684 1.03302 1.01776 0.96245 1.69844 1.56239 1.30303 1.05732 0.84983 0.76979 0.78990 0.78215 1.18630 1.21996 1.22010 1.20714 1.12502 0.94780 0.88681 1.98354 1.94347 1.92826 1.13412 0.93655 0.89500 0.92043 0.88492 0.86506 0.74653 0.92193 0.92188 0.94513 0.94529 0.79343 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 71.98 0.71 -0.23 16 2 C -0.05 -0.34 6.36 29.85 0.19 -0.15 16 3 C 0.06 0.80 6.51 41.33 0.27 1.07 16 4 N -0.35 -4.16 6.86 -47.55 -0.33 -4.49 16 5 H 0.47 1.26 8.96 -219.99 -1.97 -0.71 16 6 N -0.24 -4.94 11.91 -48.17 -0.57 -5.51 16 7 C -0.02 -0.51 7.13 42.45 0.30 -0.21 16 8 C 0.59 19.55 7.82 86.73 0.68 20.22 16 9 O -0.55 -21.98 15.87 -3.95 -0.06 -22.04 16 10 N -0.70 -21.44 5.55 -466.15 -2.59 -24.03 16 11 C 0.13 4.69 5.79 86.38 0.50 5.19 16 12 C 0.15 5.98 6.37 86.38 0.55 6.53 16 13 N -0.75 -38.90 5.60 -343.47 -1.92 -40.82 16 14 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 15 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 17 N -0.97 -60.68 13.06 21.65 0.28 -60.39 16 18 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 C -0.13 -2.97 6.79 22.44 0.15 -2.82 16 23 Cl -0.02 -0.44 28.02 -2.72 -0.08 -0.52 16 24 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.42 10.72 8.19 -92.71 -0.76 9.96 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.37 21.00 7.67 -92.71 -0.71 20.29 16 35 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -75.76 324.15 -0.87 -76.63 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -2.29 Total: 20.30 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 4.66 Total: 12.50 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -5.13 Total: -135.25 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -75.76 -0.87 -76.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129709500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.359 kcal (2) G-P(sol) polarization free energy of solvation -75.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds