Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47444 * 239.99922 * 3 2 1 5 5 H 1.48499 * 109.47006 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46920 * 119.99562 * 3 2 1 7 7 C 1.39936 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00278 * 175.26219 * 7 2 1 9 9 C 1.41440 * 119.99863 * 355.26211 * 7 2 1 10 10 C 1.40789 * 120.17335 * 214.86115 * 9 7 2 11 11 C 1.37718 * 120.03803 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41169 * 359.69427 * 11 10 9 13 13 C 1.39887 * 120.36077 * 0.56202 * 12 11 10 14 14 C 1.47853 * 120.02932 * 179.73758 * 13 12 11 15 15 O 1.21566 * 120.00150 * 179.72237 * 14 13 12 16 16 N 1.34780 * 119.99905 * 359.72879 * 14 13 12 17 17 C 1.39989 * 119.99835 * 185.64514 * 16 14 13 18 18 C 1.39134 * 120.49615 * 24.56207 * 17 16 14 19 19 C 1.38617 * 118.38477 * 180.28383 * 18 17 16 20 20 C 1.38161 * 119.29353 * 359.44120 * 19 18 17 21 21 N 1.31946 * 120.94666 * 0.29083 * 20 19 18 22 22 C 1.31954 * 121.75982 * 359.97438 * 21 20 19 23 23 F 1.35097 * 119.69833 * 179.97438 * 22 21 20 24 24 C 1.39052 * 119.94590 * 359.46849 * 13 12 11 25 25 H 0.97001 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.98078 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.78917 * 179.97438 * 11 10 9 28 28 H 1.08007 * 119.81602 * 180.30556 * 12 11 10 29 29 H 0.96996 * 119.99657 * 5.64804 * 16 14 13 30 30 H 1.07997 * 120.80851 * 359.97438 * 18 17 16 31 31 H 1.08006 * 120.35170 * 179.71392 * 19 18 17 32 32 H 1.08002 * 119.53078 * 180.27995 * 20 19 18 33 33 H 1.07994 * 120.20391 * 180.22998 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0959 1.6963 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0852 -1.2136 -0.0767 9 6 1.3043 -2.4346 0.1023 10 6 1.8655 -3.5176 0.8054 11 6 1.1782 -4.7071 0.9023 12 6 -0.0679 -4.8457 0.3170 13 6 -0.6391 -3.7825 -0.3902 14 6 -1.9685 -3.9405 -1.0177 15 8 -2.4667 -3.0146 -1.6278 16 7 -2.6282 -5.1112 -0.9131 17 6 -3.8306 -5.3013 -1.6043 18 6 -4.1086 -4.5665 -2.7527 19 6 -5.3149 -4.7857 -3.3993 20 6 -6.1912 -5.7271 -2.8946 21 7 -5.8974 -6.4129 -1.8063 22 6 -4.7631 -6.2324 -1.1567 23 9 -4.5051 -6.9572 -0.0462 24 6 0.0419 -2.5749 -0.4979 25 1 -0.4850 0.8401 -0.0004 26 1 2.8354 -3.4155 1.2692 27 1 1.6126 -5.5353 1.4423 28 1 -0.6006 -5.7813 0.4031 29 1 -2.2698 -5.8219 -0.3587 30 1 -3.4039 -3.8394 -3.1282 31 1 -5.5653 -4.2296 -4.2907 32 1 -7.1302 -5.9042 -3.3979 33 1 -0.3968 -1.7502 -1.0397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130164132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = -17.378765 kcal Electronic energy + Delta-G solvation = -21113.878339 eV Core-core repulsion = 17633.016998 eV Total energy + Delta-G solvation = -3480.861341 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.00872 -40.62994 -39.13006 -37.25858 -34.94811 -33.76915 -32.16407 -30.78638 -29.60657 -29.26533 -25.47436 -24.42687 -23.55460 -22.24785 -21.05907 -19.85680 -18.54023 -17.92498 -17.49082 -16.76408 -16.23008 -15.86546 -15.32658 -15.10943 -14.77446 -14.57602 -14.17826 -13.60425 -13.38612 -13.29622 -13.13542 -12.79253 -12.67246 -12.52196 -11.83239 -11.24085 -11.21080 -11.01967 -10.85110 -10.56475 -10.26629 -9.98589 -9.87141 -9.66355 -9.35887 -9.12852 -8.23607 -7.79563 -7.53753 -6.74716 -4.56393 0.80158 1.08598 1.97012 2.71556 3.03544 3.05236 3.06753 3.07945 3.42109 3.53573 3.72913 3.88907 4.40706 4.56828 4.71447 4.95264 5.10808 5.40197 5.47262 5.53350 5.85837 5.95097 6.07222 6.09659 6.21077 6.54456 6.71201 6.80727 6.87867 7.14454 7.22806 7.43174 7.53054 7.55702 7.69333 7.86764 8.06176 8.39312 8.46193 8.70956 8.75416 10.16234 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.004113 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.011571 B = 6806.385527 C = 7722.153143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.080 0.920 9 C 0.093 3.907 10 C -0.193 4.193 11 C -0.104 4.104 12 C -0.204 4.204 13 C -0.139 4.139 14 C 0.568 3.432 15 O -0.519 6.519 16 N -0.669 5.669 17 C 0.103 3.897 18 C -0.071 4.071 19 C -0.156 4.156 20 C 0.098 3.902 21 N -0.493 5.493 22 C 0.264 3.736 23 F -0.114 7.114 24 C -0.075 4.075 25 H 0.283 0.717 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.416 0.584 30 H 0.168 0.832 31 H 0.146 0.854 32 H 0.166 0.834 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 -7.392 -4.509 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.148 4.148 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.098 0.902 9 C 0.091 3.909 10 C -0.212 4.212 11 C -0.123 4.123 12 C -0.224 4.224 13 C -0.142 4.142 14 C 0.362 3.638 15 O -0.395 6.395 16 N -0.314 5.314 17 C 0.003 3.997 18 C -0.099 4.099 19 C -0.176 4.176 20 C -0.060 4.060 21 N -0.207 5.207 22 C 0.107 3.893 23 F -0.093 7.093 24 C -0.096 4.096 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.254 0.746 30 H 0.186 0.814 31 H 0.164 0.836 32 H 0.183 0.817 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.619 -7.156 -4.545 11.398 hybrid contribution 1.046 0.734 0.436 1.350 sum -6.573 -6.423 -4.108 10.066 Atomic orbital electron populations 1.69690 1.07297 1.29516 1.36410 1.25932 0.94986 1.01439 0.92399 0.86189 0.79771 0.79859 0.79845 1.18902 1.20268 1.18994 1.19516 0.94894 0.89884 1.45059 0.90188 1.17652 0.91840 0.92432 0.89000 1.21322 1.01099 0.94907 1.03910 1.20477 0.94836 0.96941 1.00000 1.20441 0.97902 0.97020 1.07035 1.19373 0.92881 0.97313 1.04658 1.19101 0.85658 0.80086 0.79000 1.90673 1.67894 1.39225 1.41723 1.43638 1.20889 1.18320 1.48554 1.18624 0.88378 0.98442 0.94280 1.21957 0.98217 0.98500 0.91191 1.22145 0.94436 0.99272 1.01770 1.22393 0.99856 0.92456 0.91246 1.66941 1.17177 1.27080 1.09494 1.17820 0.90939 0.93968 0.86575 1.91596 1.93065 1.76210 1.48435 1.21973 0.95483 0.94387 0.97723 0.90538 0.88200 0.88463 0.89029 0.74556 0.81435 0.83643 0.81700 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.67 10.60 55.55 0.59 -20.08 16 2 C 0.07 1.69 5.42 -17.35 -0.09 1.60 16 3 Si 0.92 18.38 29.56 -169.99 -5.03 13.35 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.73 9.04 -37.73 -0.34 -12.07 16 8 H 0.08 1.92 7.85 -52.48 -0.41 1.50 16 9 C 0.09 2.35 5.55 -106.87 -0.59 1.75 16 10 C -0.19 -4.33 9.78 -38.81 -0.38 -4.71 16 11 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 12 C -0.20 -4.04 9.54 -38.92 -0.37 -4.41 16 13 C -0.14 -3.08 5.87 -105.04 -0.62 -3.70 16 14 C 0.57 11.61 7.59 -12.32 -0.09 11.51 16 15 O -0.52 -11.68 13.54 5.31 0.07 -11.61 16 16 N -0.67 -11.15 5.26 -10.55 -0.06 -11.21 16 17 C 0.10 1.62 6.46 -83.45 -0.54 1.08 16 18 C -0.07 -1.03 8.82 -39.11 -0.35 -1.38 16 19 C -0.16 -1.73 10.10 -39.47 -0.40 -2.13 16 20 C 0.10 1.09 11.17 -17.53 -0.20 0.89 16 21 N -0.49 -7.01 10.37 -13.44 -0.14 -7.15 16 22 C 0.26 4.01 8.43 -17.15 -0.14 3.87 16 23 F -0.11 -1.72 16.85 2.25 0.04 -1.68 16 24 C -0.08 -1.90 8.22 -38.44 -0.32 -2.22 16 25 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 26 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 27 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.09 1.49 6.39 -52.48 -0.34 1.16 16 29 H 0.42 6.09 6.50 -40.82 -0.27 5.83 16 30 H 0.17 2.69 5.89 -52.49 -0.31 2.38 16 31 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.15 4.00 5.72 -52.49 -0.30 3.70 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -28.31 296.38 -7.33 -35.64 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -2.45 Total: 10.66 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -4.83 Total: -12.39 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.39 Total: -38.44 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.31 -7.33 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130164132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.259 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds