Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47444 * 239.99922 * 3 2 1 5 5 H 1.48499 * 109.47006 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46920 * 119.99562 * 3 2 1 7 7 C 1.39936 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00278 * 175.26219 * 7 2 1 9 9 C 1.41440 * 119.99863 * 355.26211 * 7 2 1 10 10 C 1.40789 * 120.17335 * 214.86115 * 9 7 2 11 11 C 1.37718 * 120.03803 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41169 * 359.69427 * 11 10 9 13 13 C 1.39887 * 120.36077 * 0.56202 * 12 11 10 14 14 C 1.47853 * 120.02932 * 179.73758 * 13 12 11 15 15 O 1.21566 * 120.00150 * 179.72237 * 14 13 12 16 16 N 1.34780 * 119.99905 * 359.72879 * 14 13 12 17 17 C 1.39989 * 119.99835 * 185.64514 * 16 14 13 18 18 C 1.39134 * 120.49615 * 24.56207 * 17 16 14 19 19 C 1.38617 * 118.38477 * 180.28383 * 18 17 16 20 20 C 1.38161 * 119.29353 * 359.44120 * 19 18 17 21 21 N 1.31946 * 120.94666 * 0.29083 * 20 19 18 22 22 C 1.31954 * 121.75982 * 359.97438 * 21 20 19 23 23 F 1.35097 * 119.69833 * 179.97438 * 22 21 20 24 24 C 1.39052 * 119.94590 * 359.46849 * 13 12 11 25 25 H 0.97001 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.98078 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.78917 * 179.97438 * 11 10 9 28 28 H 1.08007 * 119.81602 * 180.30556 * 12 11 10 29 29 H 0.96996 * 119.99657 * 5.64804 * 16 14 13 30 30 H 1.07997 * 120.80851 * 359.97438 * 18 17 16 31 31 H 1.08006 * 120.35170 * 179.71392 * 19 18 17 32 32 H 1.08002 * 119.53078 * 180.27995 * 20 19 18 33 33 H 1.07994 * 120.20391 * 180.22998 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0959 1.6963 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0852 -1.2136 -0.0767 9 6 1.3043 -2.4346 0.1023 10 6 1.8655 -3.5176 0.8054 11 6 1.1782 -4.7071 0.9023 12 6 -0.0679 -4.8457 0.3170 13 6 -0.6391 -3.7825 -0.3902 14 6 -1.9685 -3.9405 -1.0177 15 8 -2.4667 -3.0146 -1.6278 16 7 -2.6282 -5.1112 -0.9131 17 6 -3.8306 -5.3013 -1.6043 18 6 -4.1086 -4.5665 -2.7527 19 6 -5.3149 -4.7857 -3.3993 20 6 -6.1912 -5.7271 -2.8946 21 7 -5.8974 -6.4129 -1.8063 22 6 -4.7631 -6.2324 -1.1567 23 9 -4.5051 -6.9572 -0.0462 24 6 0.0419 -2.5749 -0.4979 25 1 -0.4850 0.8401 -0.0004 26 1 2.8354 -3.4155 1.2692 27 1 1.6126 -5.5353 1.4423 28 1 -0.6006 -5.7813 0.4031 29 1 -2.2698 -5.8219 -0.3587 30 1 -3.4039 -3.8394 -3.1282 31 1 -5.5653 -4.2296 -4.2907 32 1 -7.1302 -5.9042 -3.3979 33 1 -0.3968 -1.7502 -1.0397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130164132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = -34.295719 kcal Electronic energy + Delta-G solvation = -21114.611913 eV Core-core repulsion = 17633.016998 eV Total energy + Delta-G solvation = -3481.594915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.15128 -41.93059 -40.47192 -38.94259 -36.36997 -35.53625 -33.31027 -32.29186 -31.34582 -30.60801 -27.26632 -25.73334 -24.72353 -23.65307 -22.79194 -21.40303 -19.96232 -19.18352 -18.92383 -18.00245 -17.63601 -17.26079 -16.88207 -16.44336 -16.27519 -15.96711 -15.73758 -15.09297 -14.74963 -14.64523 -14.39434 -14.30523 -14.17092 -13.63043 -13.50817 -12.90377 -12.80225 -12.58605 -12.35082 -12.20181 -11.96651 -11.59144 -11.33484 -11.10866 -10.81046 -10.48184 -9.65769 -9.32407 -9.32356 -8.54017 -6.46076 -0.31903 -0.02083 0.34675 0.98583 1.38546 1.46909 1.51098 1.72862 1.91048 2.21804 2.42974 2.57521 2.79585 3.36926 3.57897 3.59195 3.90500 3.98949 4.21829 4.34766 4.50251 4.58500 4.80859 4.85213 5.03399 5.05193 5.09780 5.11900 5.32678 5.47296 5.59944 5.77622 5.82693 6.03798 6.17753 6.27672 6.53729 6.56776 6.87883 6.91299 6.94445 8.37963 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.004113 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.011571 B = 6806.385527 C = 7722.153143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.025 3.975 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.083 0.917 9 C 0.061 3.939 10 C -0.196 4.196 11 C -0.103 4.103 12 C -0.185 4.185 13 C -0.148 4.148 14 C 0.569 3.431 15 O -0.549 6.549 16 N -0.654 5.654 17 C 0.077 3.923 18 C -0.086 4.086 19 C -0.139 4.139 20 C 0.114 3.886 21 N -0.509 5.509 22 C 0.257 3.743 23 F -0.117 7.117 24 C -0.111 4.111 25 H 0.283 0.717 26 H 0.113 0.887 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.425 0.575 30 H 0.148 0.852 31 H 0.184 0.816 32 H 0.213 0.787 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 -9.152 -4.756 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.187 4.187 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.530 4.530 8 H 0.101 0.899 9 C 0.059 3.941 10 C -0.215 4.215 11 C -0.121 4.121 12 C -0.204 4.204 13 C -0.151 4.151 14 C 0.361 3.639 15 O -0.428 6.428 16 N -0.300 5.300 17 C -0.022 4.022 18 C -0.114 4.114 19 C -0.159 4.159 20 C -0.044 4.044 21 N -0.223 5.223 22 C 0.101 3.899 23 F -0.097 7.097 24 C -0.132 4.132 25 H 0.094 0.906 26 H 0.131 0.869 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.265 0.735 30 H 0.166 0.834 31 H 0.202 0.798 32 H 0.229 0.771 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.612 -8.977 -4.783 13.328 hybrid contribution 1.192 1.046 0.440 1.645 sum -7.420 -7.931 -4.343 11.697 Atomic orbital electron populations 1.69836 1.08863 1.30117 1.38281 1.26813 0.95639 1.04717 0.91531 0.85145 0.78400 0.75399 0.80117 1.18218 1.19905 1.18198 1.19804 0.95193 0.90935 1.47111 0.89922 1.17985 0.92396 0.93611 0.90136 1.21613 1.01726 0.95048 1.03160 1.20953 0.94531 0.97216 0.99358 1.20952 0.97735 0.97601 1.04156 1.19625 0.93688 0.97037 1.04745 1.18859 0.85384 0.80849 0.78763 1.90657 1.68515 1.40566 1.43063 1.43278 1.21142 1.17164 1.48420 1.18743 0.88320 0.99949 0.95233 1.21995 0.99517 0.98265 0.91599 1.22553 0.92486 0.98720 1.02157 1.23231 1.00925 0.90530 0.89681 1.67074 1.16595 1.28008 1.10620 1.17836 0.91253 0.93987 0.86821 1.91577 1.93169 1.76251 1.48664 1.21751 0.96648 0.95106 0.99658 0.90615 0.86853 0.84068 0.84771 0.73516 0.83439 0.79848 0.77088 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.11 10.60 21.82 0.23 -45.87 16 2 C 0.03 1.28 5.42 85.25 0.46 1.75 16 3 Si 0.99 38.90 29.56 68.60 2.03 40.92 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.50 -26.48 9.04 23.47 0.21 -26.26 16 8 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 9 C 0.06 3.18 5.55 -21.32 -0.12 3.06 16 10 C -0.20 -8.73 9.78 22.77 0.22 -8.51 16 11 C -0.10 -3.87 10.01 22.18 0.22 -3.65 16 12 C -0.18 -6.96 9.54 22.70 0.22 -6.74 16 13 C -0.15 -6.66 5.87 -20.14 -0.12 -6.78 16 14 C 0.57 23.79 7.59 86.79 0.66 24.45 16 15 O -0.55 -25.97 13.54 -3.92 -0.05 -26.02 16 16 N -0.65 -21.56 5.26 -305.56 -1.61 -23.16 16 17 C 0.08 2.37 6.46 38.28 0.25 2.61 16 18 C -0.09 -2.45 8.82 22.58 0.20 -2.25 16 19 C -0.14 -2.67 10.10 22.34 0.23 -2.45 16 20 C 0.11 2.08 11.17 84.66 0.95 3.02 16 21 N -0.51 -13.14 10.37 -196.43 -2.04 -15.18 16 22 C 0.26 7.44 8.43 84.90 0.72 8.16 16 23 F -0.12 -3.39 16.85 44.97 0.76 -2.63 16 24 C -0.11 -5.90 8.22 23.01 0.19 -5.71 16 25 H 0.28 14.38 8.30 -92.71 -0.77 13.61 16 26 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 27 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.13 3.86 6.39 -2.91 -0.02 3.84 16 29 H 0.42 11.81 6.50 -92.71 -0.60 11.21 16 30 H 0.15 4.87 5.89 -2.91 -0.02 4.85 16 31 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.21 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.11 6.75 5.72 -2.91 -0.02 6.73 16 Total: -1.00 -66.31 296.38 4.18 -62.12 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.58 Total: 29.11 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.28 Total: -19.29 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -3.41 Total: -84.22 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.76 Total: -2.63 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.92 kcal Total: -66.31 4.18 -62.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130164132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.828 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds