Wall clock time and date at job start Tue Mar 31 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46843 * 2 1 4 4 C 1.53009 * 109.47029 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47145 * 173.89668 * 4 3 2 6 6 C 1.36935 * 120.00375 * 283.56320 * 5 4 3 7 7 H 1.08003 * 119.99961 * 40.92863 * 6 5 4 8 8 C 1.38814 * 120.00685 * 220.93148 * 6 5 4 9 9 N 1.31615 * 119.99251 * 18.33730 * 8 6 5 10 10 Si 1.86794 * 120.00105 * 198.34389 * 8 6 5 11 11 H 1.48498 * 109.47510 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47385 * 120.00073 * 10 8 6 13 13 H 1.48503 * 109.46672 * 239.99401 * 10 8 6 14 14 C 1.46501 * 119.99929 * 103.56659 * 5 4 3 15 15 C 1.50707 * 109.46824 * 264.10878 * 14 5 4 16 16 C 1.38686 * 120.78865 * 260.09326 * 15 14 5 17 17 C 1.38152 * 119.21771 * 179.77590 * 16 15 14 18 18 N 1.31907 * 120.83374 * 0.51595 * 17 16 15 19 19 C 1.31921 * 121.73255 * 359.73920 * 18 17 16 20 20 Cl 1.73599 * 119.65449 * 179.97438 * 19 18 17 21 21 C 1.38637 * 120.69646 * 359.97438 * 19 18 17 22 22 F 1.35101 * 120.44819 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.46740 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47220 * 300.00107 * 1 2 3 25 25 H 1.08998 * 109.46957 * 60.00461 * 1 2 3 26 26 H 1.08995 * 109.47160 * 239.99343 * 2 1 3 27 27 H 1.09006 * 109.46725 * 119.99771 * 2 1 3 28 28 H 1.09004 * 109.47481 * 60.00239 * 3 2 1 29 29 H 1.08992 * 109.47390 * 299.99681 * 3 2 1 30 30 H 1.08998 * 109.46769 * 53.89670 * 4 3 2 31 31 H 1.08994 * 109.46941 * 293.90057 * 4 3 2 32 32 H 0.97007 * 119.99458 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47049 * 24.10486 * 14 5 4 34 34 H 1.09000 * 109.47435 * 144.10887 * 14 5 4 35 35 H 1.08002 * 120.39202 * 0.02562 * 16 15 14 36 36 H 1.07998 * 119.58426 * 180.23003 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8158 -0.1462 6 6 4.0249 3.4272 -1.3710 7 1 3.1681 3.2982 -2.0158 8 6 5.0923 4.2127 -1.7842 9 7 6.2637 4.0930 -1.1963 10 14 4.8658 5.4397 -3.1744 11 1 3.4650 5.3806 -3.6636 12 1 5.1604 6.8085 -2.6795 13 1 5.7924 5.1051 -4.2856 14 6 4.5826 3.5352 1.0174 15 6 3.4929 4.3890 1.6129 16 6 3.4283 5.7478 1.3432 17 6 2.4127 6.4989 1.9026 18 7 1.5163 5.9413 2.6935 19 6 1.5473 4.6535 2.9778 20 17 0.3405 3.9760 4.0259 21 6 2.5334 3.8354 2.4485 22 9 2.5601 2.5170 2.7426 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9337 0.8369 -0.8294 31 1 3.9330 1.0263 0.9404 32 1 7.0095 4.6422 -1.4848 33 1 4.9301 2.8184 1.7614 34 1 5.4133 4.1697 0.7084 35 1 4.1610 6.2126 0.7000 36 1 2.3546 7.5569 1.6935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139664845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:26 Heat of formation + Delta-G solvation = -13.560202 kcal Electronic energy + Delta-G solvation = -21232.946600 eV Core-core repulsion = 17885.651089 eV Total energy + Delta-G solvation = -3347.295511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.56918 -39.70449 -36.67934 -36.30202 -34.28162 -32.43128 -31.24719 -30.30899 -28.14179 -26.31719 -24.14468 -23.13513 -22.24144 -20.79260 -20.27744 -17.34655 -17.27419 -16.68143 -16.16677 -15.61977 -14.96723 -14.74199 -14.21309 -13.84773 -13.59435 -13.56682 -13.46691 -13.36080 -12.57522 -12.19559 -12.10669 -11.84624 -11.50735 -11.30946 -11.19386 -11.09740 -10.83913 -10.76869 -10.54332 -10.47800 -10.22970 -10.07503 -9.74088 -9.42445 -9.04699 -8.68244 -8.50341 -6.73926 -5.98358 -3.62195 1.14364 1.43380 1.96624 3.21327 3.32289 3.35658 3.85070 4.31888 4.35958 4.71623 5.06924 5.16660 5.26365 5.28296 5.42740 5.61632 5.64754 5.66636 5.84667 5.98995 6.18874 6.22397 6.25823 6.34965 6.37399 6.41547 6.61462 6.65569 6.73480 6.88442 6.97390 7.15844 7.31061 7.67278 7.89229 8.34474 8.97364 9.57215 10.17871 11.00106 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.007672 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.706767 B = 3648.924076 C = 4964.107956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.141 4.141 4 C 0.149 3.851 5 N -0.570 5.570 6 C -0.259 4.259 7 H 0.061 0.939 8 C 0.018 3.982 9 N -0.882 5.882 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.287 1.287 14 C 0.172 3.828 15 C -0.049 4.049 16 C -0.127 4.127 17 C 0.097 3.903 18 N -0.473 5.473 19 C 0.133 3.867 20 Cl -0.038 7.038 21 C 0.068 3.932 22 F -0.118 7.118 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.258 0.742 33 H 0.048 0.952 34 H 0.112 0.888 35 H 0.148 0.852 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.174 -0.390 6.311 8.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.181 4.181 4 C 0.023 3.977 5 N -0.288 5.288 6 C -0.389 4.389 7 H 0.079 0.921 8 C -0.183 4.183 9 N -0.523 5.523 10 Si 0.723 3.277 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.213 1.213 14 C 0.045 3.955 15 C -0.062 4.062 16 C -0.148 4.148 17 C -0.060 4.060 18 N -0.184 5.184 19 C -0.032 4.032 20 Cl -0.009 7.009 21 C 0.044 3.956 22 F -0.097 7.097 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.165 0.835 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.731 0.041 6.702 9.499 hybrid contribution 0.241 0.025 -0.972 1.002 sum -6.491 0.066 5.730 8.658 Atomic orbital electron populations 1.21755 0.96765 1.00567 1.01515 1.21461 0.95040 0.98146 1.01176 1.22228 0.99170 0.94944 1.01723 1.20965 0.91444 0.86586 0.98682 1.43697 1.72697 1.08734 1.03705 1.19052 0.99667 1.26599 0.93565 0.92091 1.25292 0.94271 1.01010 0.97717 1.69947 0.99890 1.39490 1.43003 0.86359 0.78136 0.81148 0.82043 1.19894 1.21078 1.21325 1.20154 0.92726 0.94533 0.88084 1.22071 0.97890 0.95528 0.90690 1.22149 0.99694 0.93371 0.99597 1.22611 0.90053 1.00360 0.92977 1.66936 1.26453 1.09585 1.15467 1.21632 0.92396 0.91010 0.98195 1.98376 1.55283 1.82886 1.64380 1.18170 0.97513 0.79093 1.00830 1.91487 1.95823 1.30809 1.91551 0.93535 0.93107 0.93112 0.92533 0.92661 0.92624 0.92487 0.93818 0.94141 0.93203 0.93397 0.87076 0.83459 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.84 5.93 -26.73 -0.16 -2.00 16 3 C -0.14 -2.61 5.38 -26.73 -0.14 -2.75 16 4 C 0.15 3.05 5.51 -4.04 -0.02 3.03 16 5 N -0.57 -13.13 2.45 -174.61 -0.43 -13.56 16 6 C -0.26 -6.52 9.20 -15.06 -0.14 -6.66 16 7 H 0.06 1.58 7.57 -52.48 -0.40 1.19 16 8 C 0.02 0.46 5.06 -17.43 -0.09 0.37 16 9 N -0.88 -23.01 11.45 55.49 0.64 -22.38 16 10 Si 0.89 19.89 29.59 -169.99 -5.03 14.86 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.17 3.69 5.32 -5.19 -0.03 3.66 16 15 C -0.05 -0.95 5.46 -104.26 -0.57 -1.52 16 16 C -0.13 -2.22 9.78 -39.45 -0.39 -2.60 16 17 C 0.10 1.51 11.18 -17.55 -0.20 1.32 16 18 N -0.47 -8.19 10.34 -10.31 -0.11 -8.29 16 19 C 0.13 2.35 7.28 -17.37 -0.13 2.23 16 20 Cl -0.04 -0.59 28.78 -51.86 -1.49 -2.08 16 21 C 0.07 1.26 6.59 -39.24 -0.26 1.00 16 22 F -0.12 -2.18 14.19 2.25 0.03 -2.15 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.07 5.35 -51.93 -0.28 0.79 16 29 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.79 7.71 -51.93 -0.40 0.39 16 32 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 33 H 0.05 0.99 7.61 -51.93 -0.40 0.60 16 34 H 0.11 2.62 5.51 -51.93 -0.29 2.33 16 35 H 0.15 2.52 8.06 -52.49 -0.42 2.10 16 36 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -26.24 319.37 -7.99 -34.23 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.67 Total: 0.16 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.75 Total: -5.61 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.10 Total: -44.23 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.03 Total: -2.15 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.49 Total: -2.08 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.24 -7.99 -34.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139664845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.670 kcal (2) G-P(sol) polarization free energy of solvation -26.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds