Wall clock time and date at job start Tue Mar 31 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46843 * 2 1 4 4 C 1.53009 * 109.47029 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47145 * 173.89668 * 4 3 2 6 6 C 1.36935 * 120.00375 * 283.56320 * 5 4 3 7 7 H 1.08003 * 119.99961 * 40.92863 * 6 5 4 8 8 C 1.38814 * 120.00685 * 220.93148 * 6 5 4 9 9 N 1.31615 * 119.99251 * 18.33730 * 8 6 5 10 10 Si 1.86794 * 120.00105 * 198.34389 * 8 6 5 11 11 H 1.48498 * 109.47510 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47385 * 120.00073 * 10 8 6 13 13 H 1.48503 * 109.46672 * 239.99401 * 10 8 6 14 14 C 1.46501 * 119.99929 * 103.56659 * 5 4 3 15 15 C 1.50707 * 109.46824 * 264.10878 * 14 5 4 16 16 C 1.38686 * 120.78865 * 260.09326 * 15 14 5 17 17 C 1.38152 * 119.21771 * 179.77590 * 16 15 14 18 18 N 1.31907 * 120.83374 * 0.51595 * 17 16 15 19 19 C 1.31921 * 121.73255 * 359.73920 * 18 17 16 20 20 Cl 1.73599 * 119.65449 * 179.97438 * 19 18 17 21 21 C 1.38637 * 120.69646 * 359.97438 * 19 18 17 22 22 F 1.35101 * 120.44819 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.46740 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47220 * 300.00107 * 1 2 3 25 25 H 1.08998 * 109.46957 * 60.00461 * 1 2 3 26 26 H 1.08995 * 109.47160 * 239.99343 * 2 1 3 27 27 H 1.09006 * 109.46725 * 119.99771 * 2 1 3 28 28 H 1.09004 * 109.47481 * 60.00239 * 3 2 1 29 29 H 1.08992 * 109.47390 * 299.99681 * 3 2 1 30 30 H 1.08998 * 109.46769 * 53.89670 * 4 3 2 31 31 H 1.08994 * 109.46941 * 293.90057 * 4 3 2 32 32 H 0.97007 * 119.99458 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47049 * 24.10486 * 14 5 4 34 34 H 1.09000 * 109.47435 * 144.10887 * 14 5 4 35 35 H 1.08002 * 120.39202 * 0.02562 * 16 15 14 36 36 H 1.07998 * 119.58426 * 180.23003 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8158 -0.1462 6 6 4.0249 3.4272 -1.3710 7 1 3.1681 3.2982 -2.0158 8 6 5.0923 4.2127 -1.7842 9 7 6.2637 4.0930 -1.1963 10 14 4.8658 5.4397 -3.1744 11 1 3.4650 5.3806 -3.6636 12 1 5.1604 6.8085 -2.6795 13 1 5.7924 5.1051 -4.2856 14 6 4.5826 3.5352 1.0174 15 6 3.4929 4.3890 1.6129 16 6 3.4283 5.7478 1.3432 17 6 2.4127 6.4989 1.9026 18 7 1.5163 5.9413 2.6935 19 6 1.5473 4.6535 2.9778 20 17 0.3405 3.9760 4.0259 21 6 2.5334 3.8354 2.4485 22 9 2.5601 2.5170 2.7426 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9337 0.8369 -0.8294 31 1 3.9330 1.0263 0.9404 32 1 7.0095 4.6422 -1.4848 33 1 4.9301 2.8184 1.7614 34 1 5.4133 4.1697 0.7084 35 1 4.1610 6.2126 0.7000 36 1 2.3546 7.5569 1.6935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139664845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:26 Heat of formation + Delta-G solvation = -25.493052 kcal Electronic energy + Delta-G solvation = -21233.464047 eV Core-core repulsion = 17885.651089 eV Total energy + Delta-G solvation = -3347.812958 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.01466 -41.09870 -38.25518 -37.69646 -35.71967 -34.06429 -32.90342 -31.68479 -29.62569 -28.03846 -25.75758 -24.52954 -23.66824 -22.33297 -21.81645 -18.98320 -18.72913 -18.16841 -17.62921 -17.12320 -16.79565 -16.13455 -15.60069 -15.49628 -15.23950 -15.02311 -14.82643 -14.74341 -14.02110 -13.68027 -13.55324 -13.24207 -13.06070 -12.84066 -12.77765 -12.54644 -12.45094 -12.31639 -12.07749 -11.98193 -11.81927 -11.65323 -11.27149 -10.82530 -10.57282 -10.53800 -9.86655 -8.58550 -7.86199 -5.56244 -0.23751 0.00583 0.62353 1.44429 1.50749 1.59197 2.43901 2.52394 2.94400 3.19801 3.41977 3.66677 3.71980 3.87631 4.13935 4.18234 4.28577 4.40061 4.48923 4.54068 4.70003 4.82638 4.87546 4.98610 5.04031 5.04844 5.17213 5.19178 5.38254 5.47608 5.48432 5.55016 5.60313 5.70423 6.45200 6.53647 7.11268 7.73909 8.32068 9.09060 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.007672 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.706767 B = 3648.924076 C = 4964.107956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.127 4.127 4 C 0.149 3.851 5 N -0.585 5.585 6 C -0.268 4.268 7 H 0.047 0.953 8 C -0.016 4.016 9 N -0.909 5.909 10 Si 0.949 3.051 11 H -0.275 1.275 12 H -0.275 1.275 13 H -0.293 1.293 14 C 0.179 3.821 15 C -0.063 4.063 16 C -0.131 4.131 17 C 0.112 3.888 18 N -0.476 5.476 19 C 0.128 3.872 20 Cl -0.019 7.019 21 C 0.059 3.941 22 F -0.121 7.121 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.046 0.954 32 H 0.257 0.743 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 0.345 6.750 10.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.024 3.976 5 N -0.304 5.304 6 C -0.398 4.398 7 H 0.065 0.935 8 C -0.215 4.215 9 N -0.551 5.551 10 Si 0.776 3.224 11 H -0.200 1.200 12 H -0.200 1.200 13 H -0.220 1.220 14 C 0.053 3.947 15 C -0.075 4.075 16 C -0.152 4.152 17 C -0.045 4.045 18 N -0.188 5.188 19 C -0.037 4.037 20 Cl 0.009 6.991 21 C 0.036 3.964 22 F -0.100 7.100 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.167 0.833 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.071 0.771 7.165 10.820 hybrid contribution 0.633 -0.213 -1.030 1.227 sum -7.438 0.558 6.135 9.658 Atomic orbital electron populations 1.21717 0.95207 1.02021 1.01267 1.21435 0.96382 0.95819 1.01827 1.22038 0.97457 0.96913 1.00215 1.21007 0.92785 0.85546 0.98298 1.43830 1.73141 1.09715 1.03744 1.19064 0.99221 1.27057 0.94479 0.93498 1.25803 0.93917 1.02230 0.99538 1.70045 1.00382 1.40344 1.44328 0.85527 0.77548 0.79727 0.79551 1.20024 1.20038 1.21963 1.19901 0.92861 0.94345 0.87612 1.21853 0.97518 0.96309 0.91821 1.22274 1.00397 0.92802 0.99686 1.23218 0.88314 1.01915 0.91003 1.67100 1.26759 1.09238 1.15686 1.21768 0.92534 0.91146 0.98221 1.98379 1.54338 1.82725 1.63649 1.18169 0.97872 0.79151 1.01224 1.91471 1.95880 1.31002 1.91612 0.91241 0.93306 0.93420 0.92164 0.91730 0.93283 0.94637 0.95201 0.93551 0.93322 0.93566 0.89176 0.83300 0.77697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.12 -3.44 5.93 30.59 0.18 -3.26 16 3 C -0.13 -4.69 5.38 30.60 0.16 -4.53 16 4 C 0.15 6.19 5.51 86.38 0.48 6.67 16 5 N -0.59 -27.46 2.45 -706.34 -1.73 -29.19 16 6 C -0.27 -13.72 9.20 84.03 0.77 -12.94 16 7 H 0.05 2.50 7.57 -2.91 -0.02 2.48 16 8 C -0.02 -0.81 5.06 84.86 0.43 -0.38 16 9 N -0.91 -48.05 11.45 21.65 0.25 -47.81 16 10 Si 0.95 40.89 29.59 68.60 2.03 42.92 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.18 7.83 5.32 85.63 0.46 8.28 16 15 C -0.06 -2.42 5.46 -19.63 -0.11 -2.52 16 16 C -0.13 -4.39 9.78 22.36 0.22 -4.18 16 17 C 0.11 3.20 11.18 84.66 0.95 4.15 16 18 N -0.48 -15.31 10.34 -186.52 -1.93 -17.24 16 19 C 0.13 4.33 7.28 84.77 0.62 4.94 16 20 Cl -0.02 -0.57 28.78 -2.72 -0.08 -0.65 16 21 C 0.06 2.16 6.59 22.49 0.15 2.31 16 22 F -0.12 -4.41 14.19 44.97 0.64 -3.77 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.05 1.87 5.35 -2.38 -0.01 1.86 16 29 H 0.03 1.44 7.66 -2.39 -0.02 1.43 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.84 7.71 -2.39 -0.02 1.82 16 32 H 0.26 13.07 8.31 -92.70 -0.77 12.30 16 33 H 0.05 1.96 7.61 -2.39 -0.02 1.94 16 34 H 0.09 4.35 5.51 -2.39 -0.01 4.34 16 35 H 0.15 4.95 8.06 -2.91 -0.02 4.92 16 36 H 0.21 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -55.55 319.37 5.28 -50.27 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.08 Total: 9.91 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.02 Total: -4.45 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -3.41 Total: -94.23 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.64 Total: -3.77 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -55.55 5.28 -50.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139664845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.774 kcal (2) G-P(sol) polarization free energy of solvation -55.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds