Wall clock time and date at job start Tue Mar 31 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86801 * 120.00203 * 2 1 4 4 H 1.48503 * 109.47072 * 89.99551 * 3 2 1 5 5 H 1.48494 * 109.47177 * 210.00038 * 3 2 1 6 6 H 1.48501 * 109.46698 * 329.99770 * 3 2 1 7 7 C 1.40028 * 119.99791 * 180.26768 * 2 1 3 8 8 H 1.08003 * 119.99440 * 164.23849 * 7 2 1 9 9 C 1.41313 * 119.99998 * 344.24673 * 7 2 1 10 10 C 1.40599 * 119.78240 * 171.23954 * 9 7 2 11 11 C 1.38348 * 119.14196 * 179.76788 * 10 9 7 12 12 C 1.38636 * 118.68507 * 0.50220 * 11 10 9 13 13 C 1.39757 * 119.48909 * 359.74548 * 12 11 10 14 14 N 1.38829 * 119.58089 * 180.02562 * 13 12 11 15 15 C 1.46984 * 110.99971 * 52.99630 * 14 13 12 16 16 C 1.53152 * 109.48294 * 52.00243 * 15 14 13 17 17 C 1.52334 * 108.19104 * 50.42898 * 16 15 14 18 18 C 1.38951 * 124.36265 * 163.32681 * 17 16 15 19 19 C 1.33021 * 115.62541 * 180.09332 * 18 17 16 20 20 S 1.75779 * 109.60917 * 359.97260 * 19 18 17 21 21 C 1.34803 * 121.88695 * 343.34070 * 17 16 15 22 22 C 1.47108 * 110.99716 * 176.81334 * 14 13 12 23 23 N 1.31978 * 120.83463 * 359.97438 * 13 12 11 24 24 H 0.97006 * 119.99468 * 359.72699 * 1 2 3 25 25 H 1.07997 * 120.42252 * 0.02562 * 10 9 7 26 26 H 1.08003 * 120.65271 * 180.26620 * 11 10 9 27 27 H 1.07998 * 120.25679 * 179.72089 * 12 11 10 28 28 H 1.08996 * 109.47100 * 172.00915 * 15 14 13 29 29 H 1.08996 * 109.46580 * 292.00097 * 15 14 13 30 30 H 1.08996 * 109.71829 * 170.09914 * 16 15 14 31 31 H 1.08997 * 109.71952 * 290.70672 * 16 15 14 32 32 H 1.08006 * 122.18337 * 0.06030 * 18 17 16 33 33 H 1.07997 * 125.19865 * 179.97438 * 19 18 17 34 34 H 1.08995 * 109.62786 * 46.88515 * 22 14 13 35 35 H 1.09004 * 109.62516 * 167.45422 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 1.4001 5 1 3.5390 1.4401 -0.7000 6 1 1.4390 2.6526 -0.7001 7 6 2.0076 -1.2127 -0.0057 8 1 3.0571 -1.2290 -0.2598 9 6 1.3408 -2.4150 0.3210 10 6 1.9924 -3.6472 0.1368 11 6 1.3289 -4.8159 0.4655 12 6 0.0355 -4.7311 0.9572 13 6 -0.5605 -3.4766 1.1128 14 7 -1.8555 -3.3895 1.6055 15 6 -1.9865 -4.1196 2.8744 16 6 -0.8935 -3.6597 3.8436 17 6 -0.9128 -2.1373 3.8946 18 6 -0.3083 -1.3782 4.8890 19 6 -0.4349 -0.0600 4.7635 20 16 -1.3649 0.3084 3.3181 21 6 -1.5352 -1.4012 2.9523 22 6 -2.2662 -1.9857 1.7631 23 7 0.0926 -2.3737 0.7983 24 1 -0.4850 0.8401 0.0040 25 1 2.9993 -3.6806 -0.2522 26 1 1.8079 -5.7755 0.3380 27 1 -0.5076 -5.6276 1.2176 28 1 -2.9656 -3.9192 3.3095 29 1 -1.8827 -5.1889 2.6906 30 1 -1.0891 -4.0634 4.8370 31 1 0.0789 -4.0043 3.4917 32 1 0.2288 -1.8290 5.7105 33 1 -0.0283 0.6722 5.4454 34 1 -2.0089 -1.4258 0.8640 35 1 -3.3416 -1.9358 1.9336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148635245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:25 Heat of formation + Delta-G solvation = 83.625553 kcal Electronic energy + Delta-G solvation = -20902.366607 eV Core-core repulsion = 17992.098318 eV Total energy + Delta-G solvation = -2910.268289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85375 -37.50094 -35.52017 -33.45099 -31.15410 -30.20878 -29.84352 -28.50753 -25.59376 -24.10475 -23.37320 -21.68586 -21.23034 -19.85833 -17.84607 -17.26871 -16.82386 -15.49784 -14.94526 -14.81827 -14.44579 -14.35753 -13.96103 -13.50078 -13.13789 -12.80085 -12.36972 -12.27137 -12.13651 -11.90481 -11.45746 -11.21270 -11.12829 -11.08271 -10.90507 -10.72472 -10.58548 -10.50199 -10.05309 -10.03242 -9.31796 -8.77810 -8.05540 -7.85644 -7.61362 -7.53396 -6.99126 -6.53836 -4.45503 1.66477 2.29801 2.65876 2.77516 3.03298 3.09802 3.11716 3.23844 3.29912 3.96155 4.49182 4.77511 5.24169 5.46851 5.53527 5.56182 5.72982 5.86139 5.89426 6.06307 6.10827 6.13351 6.21020 6.46004 6.52011 6.55324 6.65880 6.72347 6.82192 6.96743 7.00205 7.15016 7.22090 7.42522 7.67617 7.80935 7.82203 8.19868 8.36834 8.72427 8.99839 10.07526 10.28726 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.010641 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.000595 B = 2630.690888 C = 3975.652016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.087 3.913 3 Si 0.896 3.104 4 H -0.268 1.268 5 H -0.263 1.263 6 H -0.276 1.276 7 C -0.437 4.437 8 H 0.081 0.919 9 C 0.283 3.717 10 C -0.299 4.299 11 C -0.044 4.044 12 C -0.324 4.324 13 C 0.327 3.673 14 N -0.470 5.470 15 C 0.064 3.936 16 C -0.083 4.083 17 C -0.133 4.133 18 C -0.117 4.117 19 C -0.242 4.242 20 S 0.108 5.892 21 C -0.137 4.137 22 C 0.128 3.872 23 N -0.505 5.505 24 H 0.273 0.727 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 -0.585 7.072 8.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.193 1.193 5 H -0.187 1.187 6 H -0.202 1.202 7 C -0.468 4.468 8 H 0.099 0.901 9 C 0.157 3.843 10 C -0.322 4.322 11 C -0.068 4.068 12 C -0.349 4.349 13 C 0.088 3.912 14 N -0.187 5.187 15 C -0.063 4.063 16 C -0.124 4.124 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.377 4.377 20 S 0.372 5.628 21 C -0.256 4.256 22 C -0.001 4.001 23 N -0.222 5.222 24 H 0.085 0.915 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.516 1.521 6.104 8.367 hybrid contribution 2.086 -0.986 1.151 2.578 sum -3.430 0.535 7.255 8.043 Atomic orbital electron populations 1.69894 1.07373 1.28040 1.28138 1.25834 0.94619 1.00580 0.92906 0.86510 0.80703 0.81408 0.79354 1.19323 1.18739 1.20160 1.19487 0.96895 0.90395 1.39985 0.90080 1.18225 0.87331 0.91652 0.87098 1.21620 1.01469 0.93616 1.15454 1.20675 0.93953 0.96586 0.95596 1.20619 0.97802 0.95663 1.20843 1.19605 0.87559 0.90520 0.93490 1.59706 1.21390 1.12486 1.25134 1.22163 0.98086 0.98598 0.87472 1.21080 1.01037 0.90532 0.99761 1.19303 1.02744 0.96175 0.96227 1.19752 1.01999 0.92892 1.00171 1.25166 1.10025 0.99330 1.03189 1.83827 1.52136 1.06797 1.19995 1.25303 1.04603 0.95262 1.00434 1.20893 0.95575 0.87538 0.96101 1.68409 1.09059 1.26014 1.18758 0.91548 0.88703 0.88792 0.88829 0.90783 0.90048 0.91209 0.90158 0.85748 0.82975 0.85398 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.66 11.19 55.55 0.62 -17.03 16 2 C 0.09 2.15 5.40 -17.34 -0.09 2.05 16 3 Si 0.90 18.64 29.59 -169.99 -5.03 13.61 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.44 -11.51 9.10 -37.74 -0.34 -11.85 16 8 H 0.08 2.06 7.89 -52.48 -0.41 1.64 16 9 C 0.28 7.58 6.49 -85.00 -0.55 7.03 16 10 C -0.30 -7.40 9.83 -38.65 -0.38 -7.78 16 11 C -0.04 -0.99 10.15 -39.39 -0.40 -1.39 16 12 C -0.32 -7.27 8.60 -38.87 -0.33 -7.61 16 13 C 0.33 7.65 4.80 -155.31 -0.75 6.90 16 14 N -0.47 -9.53 5.03 -173.83 -0.87 -10.40 16 15 C 0.06 1.07 5.50 -3.70 -0.02 1.05 16 16 C -0.08 -1.44 5.71 -26.99 -0.15 -1.60 16 17 C -0.13 -2.54 5.60 -104.76 -0.59 -3.13 16 18 C -0.12 -2.08 10.03 -41.13 -0.41 -2.49 16 19 C -0.24 -4.17 11.21 28.92 0.32 -3.84 16 20 S 0.11 1.98 23.32 -107.50 -2.51 -0.53 16 21 C -0.14 -2.69 5.39 -35.21 -0.19 -2.88 16 22 C 0.13 2.54 5.78 -4.55 -0.03 2.52 16 23 N -0.51 -13.00 5.61 -10.33 -0.06 -13.05 16 24 H 0.27 6.25 8.29 -40.82 -0.34 5.92 16 25 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 26 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 27 H 0.09 1.89 7.10 -52.49 -0.37 1.52 16 28 H 0.07 1.08 8.05 -51.93 -0.42 0.67 16 29 H 0.08 1.25 7.07 -51.93 -0.37 0.89 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.59 6.90 -51.93 -0.36 1.24 16 32 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.13 2.92 6.72 -51.93 -0.35 2.57 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -27.83 300.18 -11.19 -39.02 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -3.95 Total: 6.89 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.91 Total: -23.02 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.31 Total: -40.49 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.51 Total: -0.53 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.83 -11.19 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148635245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.641 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds