Wall clock time and date at job start Tue Mar 31 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86801 * 120.00203 * 2 1 4 4 H 1.48503 * 109.47072 * 89.99551 * 3 2 1 5 5 H 1.48494 * 109.47177 * 210.00038 * 3 2 1 6 6 H 1.48501 * 109.46698 * 329.99770 * 3 2 1 7 7 C 1.40028 * 119.99791 * 180.26768 * 2 1 3 8 8 H 1.08003 * 119.99440 * 164.23849 * 7 2 1 9 9 C 1.41313 * 119.99998 * 344.24673 * 7 2 1 10 10 C 1.40599 * 119.78240 * 171.23954 * 9 7 2 11 11 C 1.38348 * 119.14196 * 179.76788 * 10 9 7 12 12 C 1.38636 * 118.68507 * 0.50220 * 11 10 9 13 13 C 1.39757 * 119.48909 * 359.74548 * 12 11 10 14 14 N 1.38829 * 119.58089 * 180.02562 * 13 12 11 15 15 C 1.46984 * 110.99971 * 52.99630 * 14 13 12 16 16 C 1.53152 * 109.48294 * 52.00243 * 15 14 13 17 17 C 1.52334 * 108.19104 * 50.42898 * 16 15 14 18 18 C 1.38951 * 124.36265 * 163.32681 * 17 16 15 19 19 C 1.33021 * 115.62541 * 180.09332 * 18 17 16 20 20 S 1.75779 * 109.60917 * 359.97260 * 19 18 17 21 21 C 1.34803 * 121.88695 * 343.34070 * 17 16 15 22 22 C 1.47108 * 110.99716 * 176.81334 * 14 13 12 23 23 N 1.31978 * 120.83463 * 359.97438 * 13 12 11 24 24 H 0.97006 * 119.99468 * 359.72699 * 1 2 3 25 25 H 1.07997 * 120.42252 * 0.02562 * 10 9 7 26 26 H 1.08003 * 120.65271 * 180.26620 * 11 10 9 27 27 H 1.07998 * 120.25679 * 179.72089 * 12 11 10 28 28 H 1.08996 * 109.47100 * 172.00915 * 15 14 13 29 29 H 1.08996 * 109.46580 * 292.00097 * 15 14 13 30 30 H 1.08996 * 109.71829 * 170.09914 * 16 15 14 31 31 H 1.08997 * 109.71952 * 290.70672 * 16 15 14 32 32 H 1.08006 * 122.18337 * 0.06030 * 18 17 16 33 33 H 1.07997 * 125.19865 * 179.97438 * 19 18 17 34 34 H 1.08995 * 109.62786 * 46.88515 * 22 14 13 35 35 H 1.09004 * 109.62516 * 167.45422 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 1.4001 5 1 3.5390 1.4401 -0.7000 6 1 1.4390 2.6526 -0.7001 7 6 2.0076 -1.2127 -0.0057 8 1 3.0571 -1.2290 -0.2598 9 6 1.3408 -2.4150 0.3210 10 6 1.9924 -3.6472 0.1368 11 6 1.3289 -4.8159 0.4655 12 6 0.0355 -4.7311 0.9572 13 6 -0.5605 -3.4766 1.1128 14 7 -1.8555 -3.3895 1.6055 15 6 -1.9865 -4.1196 2.8744 16 6 -0.8935 -3.6597 3.8436 17 6 -0.9128 -2.1373 3.8946 18 6 -0.3083 -1.3782 4.8890 19 6 -0.4349 -0.0600 4.7635 20 16 -1.3649 0.3084 3.3181 21 6 -1.5352 -1.4012 2.9523 22 6 -2.2662 -1.9857 1.7631 23 7 0.0926 -2.3737 0.7983 24 1 -0.4850 0.8401 0.0040 25 1 2.9993 -3.6806 -0.2522 26 1 1.8079 -5.7755 0.3380 27 1 -0.5076 -5.6276 1.2176 28 1 -2.9656 -3.9192 3.3095 29 1 -1.8827 -5.1889 2.6906 30 1 -1.0891 -4.0634 4.8370 31 1 0.0789 -4.0043 3.4917 32 1 0.2288 -1.8290 5.7105 33 1 -0.0283 0.6722 5.4454 34 1 -2.0089 -1.4258 0.8640 35 1 -3.3416 -1.9358 1.9336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148635245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:24 Heat of formation + Delta-G solvation = 69.547280 kcal Electronic energy + Delta-G solvation = -20902.977087 eV Core-core repulsion = 17992.098318 eV Total energy + Delta-G solvation = -2910.878769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42519 -39.15660 -37.04358 -35.27591 -32.75104 -31.90163 -31.43929 -30.13381 -27.40032 -25.62680 -24.84945 -23.20642 -23.02347 -21.44001 -19.47935 -18.97958 -18.25760 -17.18023 -16.56534 -16.48194 -16.07410 -15.86158 -15.56384 -15.04591 -14.70946 -14.44811 -13.89378 -13.79470 -13.70557 -13.47831 -12.96940 -12.88549 -12.78096 -12.58456 -12.50467 -12.42576 -12.20949 -11.96587 -11.79925 -11.46934 -11.10485 -10.47534 -9.86589 -9.39322 -9.25648 -9.05461 -8.74433 -8.35249 -6.38158 0.25181 0.88632 0.98493 1.25175 1.27803 1.38849 1.48704 1.52523 1.89577 2.23183 2.81775 3.05666 3.90764 3.96527 4.04003 4.20196 4.24088 4.36810 4.48726 4.52532 4.64096 4.65766 4.80031 4.90812 4.97972 4.99234 5.03649 5.12145 5.18850 5.31472 5.35492 5.58367 5.71055 5.76397 5.93715 6.00365 6.05238 6.36764 6.54437 6.85217 7.12460 8.23336 8.46098 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.010641 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.000595 B = 2630.690888 C = 3975.652016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.052 3.948 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.473 4.473 8 H 0.076 0.924 9 C 0.252 3.748 10 C -0.329 4.329 11 C -0.042 4.042 12 C -0.324 4.324 13 C 0.318 3.682 14 N -0.474 5.474 15 C 0.063 3.937 16 C -0.078 4.078 17 C -0.144 4.144 18 C -0.132 4.132 19 C -0.237 4.237 20 S 0.093 5.907 21 C -0.157 4.157 22 C 0.131 3.869 23 N -0.520 5.520 24 H 0.279 0.721 25 H 0.096 0.904 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.147 0.853 33 H 0.180 0.820 34 H 0.094 0.906 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 -0.985 8.512 9.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.173 4.173 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.504 4.504 8 H 0.094 0.906 9 C 0.126 3.874 10 C -0.352 4.352 11 C -0.066 4.066 12 C -0.349 4.349 13 C 0.079 3.921 14 N -0.191 5.191 15 C -0.063 4.063 16 C -0.119 4.119 17 C -0.156 4.156 18 C -0.163 4.163 19 C -0.372 4.372 20 S 0.357 5.643 21 C -0.277 4.277 22 C 0.002 3.998 23 N -0.237 5.237 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.165 0.835 33 H 0.197 0.803 34 H 0.112 0.888 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.078 1.100 7.546 9.751 hybrid contribution 2.180 -0.956 0.738 2.492 sum -3.897 0.144 8.284 9.156 Atomic orbital electron populations 1.69953 1.08248 1.28980 1.27859 1.26462 0.95407 1.02958 0.92435 0.85560 0.79587 0.77678 0.79134 1.19487 1.18523 1.18881 1.19705 0.97023 0.91669 1.42041 0.90602 1.18628 0.88311 0.92605 0.87853 1.21764 1.02053 0.94130 1.17241 1.21036 0.94052 0.97265 0.94269 1.20965 0.97846 0.96328 1.19722 1.20027 0.88544 0.90498 0.93018 1.59731 1.19346 1.12996 1.27026 1.22346 0.99225 0.98934 0.85772 1.21073 0.99685 0.89530 1.01600 1.19693 1.02284 0.97301 0.96315 1.20050 1.02299 0.93163 1.00742 1.25553 1.09040 0.99923 1.02670 1.83813 1.52758 1.06653 1.21028 1.25322 1.05773 0.95858 1.00708 1.20773 0.96970 0.87103 0.94949 1.68406 1.08836 1.27274 1.19218 0.91068 0.88529 0.85531 0.86253 0.88216 0.88430 0.87907 0.92940 0.83513 0.80262 0.88796 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.81 11.19 21.84 0.24 -36.57 16 2 C 0.05 2.61 5.40 85.29 0.46 3.07 16 3 Si 0.96 38.61 29.59 68.60 2.03 40.64 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.47 -25.77 9.10 23.46 0.21 -25.55 16 8 H 0.08 4.01 7.89 -2.91 -0.02 3.99 16 9 C 0.25 13.88 6.49 40.19 0.26 14.14 16 10 C -0.33 -16.59 9.83 22.87 0.22 -16.36 16 11 C -0.04 -1.85 10.15 22.39 0.23 -1.62 16 12 C -0.32 -14.07 8.60 22.73 0.20 -13.88 16 13 C 0.32 14.73 4.80 133.40 0.64 15.37 16 14 N -0.47 -18.59 5.03 -703.89 -3.54 -22.13 16 15 C 0.06 1.94 5.50 86.34 0.47 2.42 16 16 C -0.08 -2.53 5.71 30.42 0.17 -2.36 16 17 C -0.14 -5.29 5.60 -19.96 -0.11 -5.40 16 18 C -0.13 -4.44 10.03 21.28 0.21 -4.22 16 19 C -0.24 -7.73 11.21 66.66 0.75 -6.98 16 20 S 0.09 3.36 23.32 -56.49 -1.32 2.04 16 21 C -0.16 -6.08 5.39 25.10 0.14 -5.95 16 22 C 0.13 5.15 5.78 85.72 0.50 5.64 16 23 N -0.52 -27.13 5.61 -186.58 -1.05 -28.18 16 24 H 0.28 12.95 8.29 -92.70 -0.77 12.18 16 25 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 26 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 27 H 0.12 4.48 7.10 -2.91 -0.02 4.46 16 28 H 0.10 2.56 8.05 -2.39 -0.02 2.54 16 29 H 0.10 2.66 7.07 -2.39 -0.02 2.65 16 30 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.05 2.01 6.90 -2.39 -0.02 1.99 16 32 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.18 4.71 8.06 -2.91 -0.02 4.69 16 34 H 0.09 4.37 6.72 -2.39 -0.02 4.36 16 35 H 0.10 3.22 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -60.76 300.18 1.83 -58.93 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 1.11 Total: 26.95 kcal Atomic # 6 Polarization: -46.04 SS G_CDS: 4.35 Total: -41.69 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -4.34 Total: -86.87 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.32 Total: 2.04 kcal Total: -60.76 1.83 -58.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148635245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.473 kcal (2) G-P(sol) polarization free energy of solvation -60.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds