Wall clock time and date at job start Tue Mar 31 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38067 * 126.28731 * 2 1 4 4 C 1.47388 * 126.41879 * 0.03984 * 3 2 1 5 5 O 1.21603 * 119.99928 * 269.71120 * 4 3 2 6 6 N 1.34777 * 119.99814 * 89.70809 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72399 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 N 1.46499 * 109.47198 * 179.97438 * 8 7 6 10 10 C 1.36936 * 119.99757 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00476 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99709 * 179.97438 * 10 9 8 13 13 N 1.31614 * 120.00319 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47141 * 59.99751 * 14 12 10 16 16 H 1.48504 * 109.47032 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 300.00028 * 14 12 10 18 18 C 1.41390 * 107.15785 * 179.77582 * 3 2 1 19 19 Cl 1.73598 * 126.00441 * 180.23067 * 18 3 2 20 20 N 1.30529 * 107.99007 * 0.22393 * 18 3 2 21 21 N 1.34242 * 126.27793 * 180.17001 * 2 1 3 22 22 C 1.46496 * 125.73745 * 359.95839 * 21 2 1 23 23 H 1.08994 * 109.47291 * 89.99732 * 1 2 3 24 24 H 1.08998 * 109.46915 * 210.00420 * 1 2 3 25 25 H 1.09006 * 109.46633 * 329.99558 * 1 2 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 27 27 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 28 28 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 29 29 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 30 30 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 31 31 H 0.97000 * 120.00386 * 359.97438 * 9 8 7 32 32 H 0.96996 * 120.00448 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.47367 * 270.28728 * 22 21 2 34 34 H 1.09002 * 109.47341 * 30.29224 * 22 21 2 35 35 H 1.09001 * 109.46914 * 150.29420 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1129 0.0000 4 6 1.8860 2.5202 0.0008 5 8 1.7097 3.1027 -1.0519 6 7 1.6806 3.1613 1.1684 7 6 1.2510 4.5619 1.1692 8 6 1.0986 5.0478 2.6120 9 7 0.6695 6.4485 2.6129 10 6 0.4660 7.1015 3.7992 11 1 0.6221 6.5841 4.7341 12 6 0.0599 8.4289 3.7999 13 7 -0.1300 9.0598 2.6605 14 14 -0.2170 9.3200 5.4182 15 1 1.0455 9.3305 6.1999 16 1 -0.6441 10.7163 5.1477 17 1 -1.2734 8.6212 6.1936 18 6 3.6600 0.6496 0.0053 19 17 5.0843 1.6420 0.0131 20 7 3.6340 -0.6555 0.0034 21 7 2.3013 -1.0822 -0.0032 22 6 1.8490 -2.4756 -0.0065 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8216 2.6968 2.0082 27 1 1.9963 5.1709 0.6576 28 1 0.2946 4.6489 0.6537 29 1 0.3533 4.4387 3.1236 30 1 2.0550 4.9609 3.1277 31 1 0.5296 6.9134 1.7731 32 1 -0.4140 9.9872 2.6610 33 1 1.7325 -2.8222 1.0204 34 1 0.8925 -2.5459 -0.5245 35 1 2.5855 -3.0954 -0.5178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149305977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:58 Heat of formation + Delta-G solvation = 45.750219 kcal Electronic energy + Delta-G solvation = -19648.315352 eV Core-core repulsion = 16323.511696 eV Total energy + Delta-G solvation = -3324.803656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.81310 -39.10068 -37.02875 -35.61407 -33.84971 -33.74822 -32.54825 -31.13847 -28.54303 -27.28718 -27.00596 -23.83734 -22.43941 -21.41395 -20.96824 -19.85329 -17.79061 -17.18597 -16.53067 -16.21192 -15.54966 -15.26619 -15.10887 -14.54058 -14.10074 -13.81389 -13.70402 -13.45466 -13.27193 -13.14784 -13.10193 -12.85106 -12.66333 -11.85726 -11.83245 -11.39602 -11.08251 -10.95194 -10.81399 -10.78035 -10.15490 -9.94732 -9.70646 -9.55976 -8.95728 -8.91797 -8.78961 -6.97446 -5.77694 -3.08291 1.13199 1.22625 1.95231 2.34512 2.64037 3.41140 3.44042 3.48938 3.50390 4.06871 4.17444 4.59370 4.61343 4.64060 4.88081 4.91306 5.04157 5.06607 5.39402 5.42627 5.52287 5.54564 5.70000 5.81278 5.99612 6.18389 6.37991 6.51981 6.73743 6.78067 7.01479 7.65877 7.67407 8.35018 8.40251 9.51216 10.06295 10.41107 11.44861 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.025467 B = 0.003153 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.194827 B = 8879.075005 C = 9318.115205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.138 3.862 3 C -0.269 4.269 4 C 0.594 3.406 5 O -0.529 6.529 6 N -0.712 5.712 7 C 0.110 3.890 8 C 0.145 3.855 9 N -0.729 5.729 10 C -0.244 4.244 11 H 0.071 0.929 12 C -0.011 4.011 13 N -0.931 5.931 14 Si 0.910 3.090 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.158 3.842 19 Cl 0.021 6.979 20 N -0.282 5.282 21 N -0.351 5.351 22 C 0.097 3.903 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.400 0.600 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.386 0.614 32 H 0.257 0.743 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 -25.413 -5.253 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.007 3.993 3 C -0.284 4.284 4 C 0.377 3.623 5 O -0.404 6.404 6 N -0.363 5.363 7 C -0.013 4.013 8 C 0.017 3.983 9 N -0.374 5.374 10 C -0.375 4.375 11 H 0.089 0.911 12 C -0.208 4.208 13 N -0.579 5.579 14 Si 0.741 3.259 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.212 1.212 18 C -0.034 4.034 19 Cl 0.049 6.951 20 N -0.106 5.106 21 N -0.133 5.133 22 C -0.044 4.044 23 H 0.111 0.889 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.234 0.766 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.220 0.780 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.016 -26.033 -5.845 26.982 hybrid contribution -0.306 1.170 1.023 1.584 sum 3.710 -24.863 -4.822 25.597 Atomic orbital electron populations 1.20627 0.85683 1.04901 1.04553 1.21404 0.94906 0.85490 0.97452 1.19823 0.91155 0.94478 1.22968 1.17071 0.77056 0.84161 0.83968 1.90806 1.50753 1.67503 1.31377 1.45926 1.68506 1.13747 1.08126 1.21622 1.00533 0.79843 0.99303 1.20755 0.97487 0.88094 0.92003 1.42180 1.81898 1.06567 1.06801 1.19148 1.38802 0.93730 0.85846 0.91097 1.24771 1.02167 0.96900 0.96952 1.69652 1.52883 1.11295 1.24073 0.86232 0.77955 0.78858 0.82894 1.21193 1.21626 1.21213 1.22539 0.88810 0.90451 1.01632 1.98431 1.35236 1.64679 1.96725 1.77168 0.96682 1.10605 1.26156 1.48053 1.02798 1.06557 1.55856 1.22043 1.01458 0.76697 1.04170 0.88948 0.90055 0.88675 0.76574 0.91082 0.91104 0.95806 0.95731 0.77979 0.93313 0.89877 0.88730 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 9.70 36.01 0.35 -0.31 16 2 C 0.14 1.40 7.01 -81.60 -0.57 0.83 16 3 C -0.27 -3.57 5.88 -105.04 -0.62 -4.19 16 4 C 0.59 9.23 7.17 -12.54 -0.09 9.14 16 5 O -0.53 -10.25 17.11 5.27 0.09 -10.15 16 6 N -0.71 -10.23 5.55 -61.39 -0.34 -10.57 16 7 C 0.11 1.91 5.79 -4.04 -0.02 1.88 16 8 C 0.14 2.83 6.37 -4.04 -0.03 2.81 16 9 N -0.73 -18.53 5.60 -59.91 -0.34 -18.86 16 10 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 12 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 13 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 14 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.16 2.13 7.89 -16.91 -0.13 1.99 16 19 Cl 0.02 0.28 29.19 -51.86 -1.51 -1.23 16 20 N -0.28 -3.52 12.50 33.18 0.41 -3.10 16 21 N -0.35 -3.30 3.98 -63.34 -0.25 -3.56 16 22 C 0.10 0.40 11.05 59.84 0.66 1.06 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.30 7.71 -51.93 -0.40 -0.10 16 25 H 0.09 0.71 7.96 -51.93 -0.41 0.30 16 26 H 0.40 4.80 8.46 -40.82 -0.35 4.45 16 27 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.39 10.38 7.67 -40.82 -0.31 10.06 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.09 0.16 7.63 -51.93 -0.40 -0.23 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -35.44 326.77 -6.38 -41.83 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.37 Total: 5.20 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.70 Total: 5.81 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.21 Total: -63.65 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.44 -6.38 -41.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149305977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.576 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds