Wall clock time and date at job start Tue Mar 31 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38067 * 126.28731 * 2 1 4 4 C 1.47388 * 126.41879 * 0.03984 * 3 2 1 5 5 O 1.21603 * 119.99928 * 269.71120 * 4 3 2 6 6 N 1.34777 * 119.99814 * 89.70809 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72399 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 N 1.46499 * 109.47198 * 179.97438 * 8 7 6 10 10 C 1.36936 * 119.99757 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00476 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99709 * 179.97438 * 10 9 8 13 13 N 1.31614 * 120.00319 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47141 * 59.99751 * 14 12 10 16 16 H 1.48504 * 109.47032 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 300.00028 * 14 12 10 18 18 C 1.41390 * 107.15785 * 179.77582 * 3 2 1 19 19 Cl 1.73598 * 126.00441 * 180.23067 * 18 3 2 20 20 N 1.30529 * 107.99007 * 0.22393 * 18 3 2 21 21 N 1.34242 * 126.27793 * 180.17001 * 2 1 3 22 22 C 1.46496 * 125.73745 * 359.95839 * 21 2 1 23 23 H 1.08994 * 109.47291 * 89.99732 * 1 2 3 24 24 H 1.08998 * 109.46915 * 210.00420 * 1 2 3 25 25 H 1.09006 * 109.46633 * 329.99558 * 1 2 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 27 27 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 28 28 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 29 29 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 30 30 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 31 31 H 0.97000 * 120.00386 * 359.97438 * 9 8 7 32 32 H 0.96996 * 120.00448 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.47367 * 270.28728 * 22 21 2 34 34 H 1.09002 * 109.47341 * 30.29224 * 22 21 2 35 35 H 1.09001 * 109.46914 * 150.29420 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1129 0.0000 4 6 1.8860 2.5202 0.0008 5 8 1.7097 3.1027 -1.0519 6 7 1.6806 3.1613 1.1684 7 6 1.2510 4.5619 1.1692 8 6 1.0986 5.0478 2.6120 9 7 0.6695 6.4485 2.6129 10 6 0.4660 7.1015 3.7992 11 1 0.6221 6.5841 4.7341 12 6 0.0599 8.4289 3.7999 13 7 -0.1300 9.0598 2.6605 14 14 -0.2170 9.3200 5.4182 15 1 1.0455 9.3305 6.1999 16 1 -0.6441 10.7163 5.1477 17 1 -1.2734 8.6212 6.1936 18 6 3.6600 0.6496 0.0053 19 17 5.0843 1.6420 0.0131 20 7 3.6340 -0.6555 0.0034 21 7 2.3013 -1.0822 -0.0032 22 6 1.8490 -2.4756 -0.0065 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8216 2.6968 2.0082 27 1 1.9963 5.1709 0.6576 28 1 0.2946 4.6489 0.6537 29 1 0.3533 4.4387 3.1236 30 1 2.0550 4.9609 3.1277 31 1 0.5296 6.9134 1.7731 32 1 -0.4140 9.9872 2.6610 33 1 1.7325 -2.8222 1.0204 34 1 0.8925 -2.5459 -0.5245 35 1 2.5855 -3.0954 -0.5178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149305977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:58 Heat of formation + Delta-G solvation = 18.693668 kcal Electronic energy + Delta-G solvation = -19649.488612 eV Core-core repulsion = 16323.511696 eV Total energy + Delta-G solvation = -3325.976916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.66412 -40.36856 -37.99292 -37.27625 -35.46235 -34.53290 -33.48266 -32.88998 -29.83704 -28.36673 -27.70247 -25.64533 -23.72769 -22.92319 -21.83179 -20.87940 -19.33398 -18.69326 -17.48924 -17.08812 -16.78889 -16.47868 -16.42085 -16.08556 -15.37064 -15.16228 -15.02438 -14.59615 -14.26517 -14.21673 -14.04181 -13.64206 -13.24026 -13.04519 -13.02291 -12.70587 -12.61322 -12.60681 -12.51487 -12.10504 -11.92898 -11.84033 -11.17336 -10.95862 -10.36043 -10.17052 -9.80674 -9.04187 -7.94525 -5.25770 0.27296 0.43460 0.97855 1.43034 1.49909 1.53607 1.59390 1.60866 2.20707 2.60427 3.36741 3.39567 3.58233 3.85915 4.00447 4.06268 4.21451 4.25321 4.37825 4.41150 4.59376 4.60688 4.68824 4.74843 4.77297 4.99127 5.05460 5.15968 5.35552 5.50846 5.73767 6.16745 6.26152 6.47880 7.15075 7.32619 8.04632 8.27857 9.28977 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.025467 B = 0.003153 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.194827 B = 8879.075005 C = 9318.115205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.156 3.844 3 C -0.303 4.303 4 C 0.603 3.397 5 O -0.573 6.573 6 N -0.699 5.699 7 C 0.128 3.872 8 C 0.150 3.850 9 N -0.746 5.746 10 C -0.249 4.249 11 H 0.082 0.918 12 C -0.076 4.076 13 N -0.971 5.971 14 Si 0.979 3.021 15 H -0.277 1.277 16 H -0.297 1.297 17 H -0.274 1.274 18 C 0.144 3.856 19 Cl 0.011 6.989 20 N -0.301 5.301 21 N -0.339 5.339 22 C 0.082 3.918 23 H 0.102 0.898 24 H 0.120 0.880 25 H 0.086 0.914 26 H 0.414 0.586 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.375 0.625 32 H 0.252 0.748 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.481 -27.916 -3.991 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.023 3.977 3 C -0.319 4.319 4 C 0.388 3.612 5 O -0.452 6.452 6 N -0.350 5.350 7 C 0.003 3.997 8 C 0.023 3.977 9 N -0.390 5.390 10 C -0.381 4.381 11 H 0.100 0.900 12 C -0.268 4.268 13 N -0.621 5.621 14 Si 0.807 3.193 15 H -0.203 1.203 16 H -0.223 1.223 17 H -0.200 1.200 18 C -0.047 4.047 19 Cl 0.039 6.961 20 N -0.126 5.126 21 N -0.121 5.121 22 C -0.056 4.056 23 H 0.121 0.879 24 H 0.138 0.862 25 H 0.104 0.896 26 H 0.251 0.749 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.206 0.794 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.148 -28.629 -4.536 29.157 hybrid contribution -0.042 1.758 0.612 1.862 sum 3.106 -26.871 -3.924 27.334 Atomic orbital electron populations 1.20819 0.82967 1.06389 1.05615 1.21843 0.96242 0.84671 0.94914 1.19683 0.91821 0.93842 1.26559 1.17340 0.75768 0.84940 0.83180 1.90779 1.52738 1.68785 1.32905 1.45732 1.67936 1.12481 1.08847 1.21223 0.99665 0.81186 0.97594 1.20835 0.97902 0.85525 0.93463 1.42405 1.82150 1.08708 1.05709 1.19611 1.37341 0.94095 0.87013 0.89972 1.25653 1.02862 0.97972 1.00307 1.69824 1.54626 1.11280 1.26344 0.85145 0.78201 0.77067 0.78912 1.20277 1.22313 1.19994 1.22594 0.88617 0.90881 1.02645 1.98416 1.35777 1.65074 1.96818 1.77102 0.98839 1.10016 1.26634 1.48507 1.01592 1.08178 1.53794 1.22589 1.03002 0.73869 1.06168 0.87926 0.86198 0.89561 0.74908 0.92863 0.91894 0.94106 0.94872 0.79375 0.93891 0.87784 0.85552 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.70 71.24 0.69 -0.31 16 2 C 0.16 2.81 7.01 42.15 0.30 3.10 16 3 C -0.30 -7.84 5.88 -20.13 -0.12 -7.96 16 4 C 0.60 18.69 7.17 86.65 0.62 19.31 16 5 O -0.57 -22.69 17.11 -4.04 -0.07 -22.76 16 6 N -0.70 -19.72 5.55 -466.40 -2.59 -22.31 16 7 C 0.13 4.43 5.79 86.38 0.50 4.93 16 8 C 0.15 5.73 6.37 86.38 0.55 6.28 16 9 N -0.75 -37.98 5.60 -343.45 -1.92 -39.90 16 10 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 11 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 12 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 13 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 14 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 16 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 C 0.14 3.83 7.89 85.66 0.68 4.50 16 19 Cl 0.01 0.30 29.19 -2.72 -0.08 0.22 16 20 N -0.30 -7.15 12.50 -48.95 -0.61 -7.77 16 21 N -0.34 -5.50 3.98 -354.30 -1.41 -6.91 16 22 C 0.08 0.37 11.05 127.77 1.41 1.78 16 23 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 24 H 0.12 0.28 7.71 -2.39 -0.02 0.26 16 25 H 0.09 1.08 7.96 -2.38 -0.02 1.07 16 26 H 0.41 9.40 8.46 -92.71 -0.78 8.62 16 27 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.37 20.56 7.67 -92.71 -0.71 19.85 16 32 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.10 0.12 8.14 -2.38 -0.02 0.10 16 34 H 0.13 -0.19 7.63 -2.39 -0.02 -0.21 16 35 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -77.69 326.77 1.20 -76.49 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.36 Total: 20.00 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 5.93 Total: 14.83 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -6.25 Total: -136.48 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.07 Total: -22.76 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -0.08 Total: 0.22 kcal Total: -77.69 1.20 -76.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149305977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.187 kcal (2) G-P(sol) polarization free energy of solvation -77.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds