Wall clock time and date at job start Tue Mar 31 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86804 * 119.99771 * 2 1 4 4 H 1.48500 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46611 * 299.99404 * 3 2 1 6 6 H 1.48496 * 109.47214 * 59.99443 * 3 2 1 7 7 C 1.40029 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00171 * 189.85332 * 7 2 1 9 9 C 1.41541 * 120.00033 * 9.85101 * 7 2 1 10 10 C 1.41178 * 120.99930 * 206.24516 * 9 7 2 11 11 C 1.37585 * 119.02174 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11473 * 359.97438 * 11 10 9 13 13 C 1.32483 * 122.22468 * 0.02562 * 12 11 10 14 14 N 1.39380 * 119.57893 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00360 * 354.67528 * 14 13 12 16 16 O 1.21549 * 120.00017 * 354.88635 * 15 14 13 17 17 C 1.47803 * 120.00477 * 174.89053 * 15 14 13 18 18 C 1.39764 * 121.19773 * 359.71359 * 17 15 14 19 19 N 1.31866 * 119.71005 * 179.76135 * 18 17 15 20 20 N 1.28221 * 122.54698 * 0.54188 * 19 18 17 21 21 C 1.31639 * 122.64262 * 359.71834 * 20 19 18 22 22 C 1.39406 * 119.85816 * 0.02562 * 21 20 19 23 23 O 1.35517 * 121.17852 * 179.97438 * 22 21 20 24 24 C 1.38619 * 120.84003 * 359.97438 * 13 12 11 25 25 H 0.97000 * 120.00316 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.48971 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.44497 * 180.02562 * 11 10 9 28 28 H 0.97004 * 119.99924 * 174.66671 * 14 13 12 29 29 H 1.07999 * 120.15008 * 0.02562 * 18 17 15 30 30 H 1.08001 * 120.07266 * 179.97438 * 21 20 19 31 31 H 0.96698 * 113.99806 * 270.02658 * 23 22 21 32 32 H 1.08001 * 120.60570 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8826 2.3963 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0757 -1.2194 0.1606 9 6 1.3157 -2.4295 -0.2086 10 6 1.8140 -3.6468 0.3043 11 6 1.1086 -4.8058 0.0763 12 7 -0.0198 -4.7942 -0.6102 13 6 -0.5298 -3.6794 -1.1124 14 7 -1.7243 -3.7309 -1.8287 15 6 -2.2972 -4.9204 -2.0991 16 8 -1.7270 -5.9515 -1.8005 17 6 -3.6189 -4.9713 -2.7588 18 6 -4.2994 -3.8014 -3.1077 19 7 -5.4750 -3.8811 -3.6996 20 7 -6.0386 -5.0015 -3.9662 21 6 -5.4869 -6.1608 -3.6757 22 6 -4.2405 -6.1994 -3.0524 23 8 -3.6481 -7.3778 -2.7408 24 6 0.1096 -2.4623 -0.9346 25 1 -0.4850 0.8400 -0.0004 26 1 2.7354 -3.6679 0.8673 27 1 1.4833 -5.7408 0.4659 28 1 -2.1434 -2.9105 -2.1326 29 1 -3.8624 -2.8365 -2.8974 30 1 -5.9990 -7.0800 -3.9188 31 1 -3.8714 -7.7094 -1.8603 32 1 -0.3097 -1.5557 -1.3453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149721776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:26 Heat of formation + Delta-G solvation = 28.171803 kcal Electronic energy + Delta-G solvation = -21219.801595 eV Core-core repulsion = 17760.835436 eV Total energy + Delta-G solvation = -3458.966158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49802 -39.59769 -38.16677 -37.60349 -34.52167 -34.00787 -32.92873 -31.86603 -30.62848 -28.78494 -26.12686 -25.68981 -24.44562 -22.23155 -21.91313 -20.20364 -19.07949 -18.32486 -17.96189 -17.55453 -16.22308 -15.89734 -15.41147 -15.26788 -15.05211 -14.49340 -14.30096 -14.20723 -14.06870 -13.75914 -12.94341 -12.69927 -12.48223 -12.37818 -11.52240 -11.26397 -11.01319 -10.79280 -10.59954 -10.38220 -10.30447 -10.19888 -9.97955 -9.87423 -9.54609 -9.49752 -8.10457 -7.89855 -7.19411 -6.85607 -4.72660 0.10089 0.52255 2.42934 2.70097 2.97146 2.97930 3.02670 3.15097 3.16713 3.43963 3.62847 3.79167 3.81764 4.11839 4.42449 4.52322 4.59912 5.00326 5.23910 5.39573 5.55417 5.73027 5.85198 6.40981 6.48301 6.68333 6.83066 7.02240 7.17002 7.23261 7.32382 7.58114 7.80272 8.03918 8.27302 8.37930 8.53054 8.63933 8.67357 9.52079 10.00274 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.004181 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.659397 B = 6695.986872 C = 7822.419125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.142 3.858 10 C -0.279 4.279 11 C 0.118 3.882 12 N -0.555 5.555 13 C 0.332 3.668 14 N -0.648 5.648 15 C 0.544 3.456 16 O -0.451 6.451 17 C -0.161 4.161 18 C 0.087 3.913 19 N -0.252 5.252 20 N -0.216 5.216 21 C 0.015 3.985 22 C 0.173 3.827 23 O -0.463 6.463 24 C -0.235 4.235 25 H 0.282 0.718 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.408 0.592 29 H 0.179 0.821 30 H 0.183 0.817 31 H 0.408 0.592 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 -4.815 -3.760 10.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.133 3.867 10 C -0.303 4.303 11 C -0.036 4.036 12 N -0.274 5.274 13 C 0.108 3.892 14 N -0.294 5.294 15 C 0.327 3.673 16 O -0.320 6.320 17 C -0.176 4.176 18 C -0.077 4.077 19 N -0.094 5.094 20 N -0.059 5.059 21 C -0.151 4.151 22 C 0.114 3.886 23 O -0.274 6.274 24 C -0.260 4.260 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.244 0.756 29 H 0.196 0.804 30 H 0.200 0.800 31 H 0.269 0.731 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.375 -5.426 -4.862 11.874 hybrid contribution 1.632 1.231 1.151 2.347 sum -7.743 -4.195 -3.711 9.556 Atomic orbital electron populations 1.69725 1.07619 1.29294 1.35426 1.25959 0.94895 1.01551 0.91875 0.86139 0.80845 0.80388 0.78693 1.18309 1.19597 1.19805 1.19642 0.95961 0.89951 1.42788 0.89885 1.17595 0.90295 0.92356 0.86436 1.21954 1.04118 0.94362 1.09820 1.21748 0.90489 0.96630 0.94704 1.67141 1.15156 1.27896 1.17216 1.18102 0.86219 0.91174 0.93712 1.43243 1.23407 1.08385 1.54414 1.17743 0.84053 0.84921 0.80599 1.90905 1.61517 1.32116 1.47463 1.22080 0.98466 0.94653 1.02380 1.24654 0.91969 0.99008 0.92092 1.72898 1.08488 1.18169 1.09857 1.72763 1.27210 0.94541 1.11371 1.24887 0.92560 0.99881 0.97810 1.19685 0.89967 0.86121 0.92796 1.84684 1.70701 1.32706 1.39266 1.21687 1.00854 0.95454 1.08022 0.90710 0.87792 0.85713 0.75626 0.80381 0.80005 0.73081 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.75 10.70 55.55 0.59 -18.15 16 2 C 0.08 1.75 5.31 -17.34 -0.09 1.66 16 3 Si 0.92 17.38 29.57 -169.99 -5.03 12.35 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 7 C -0.45 -11.20 9.14 -37.65 -0.34 -11.55 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 9 C 0.14 3.58 5.60 -106.55 -0.60 2.98 16 10 C -0.28 -6.56 9.90 -38.70 -0.38 -6.94 16 11 C 0.12 2.72 11.15 -17.68 -0.20 2.52 16 12 N -0.55 -13.47 7.88 -12.54 -0.10 -13.57 16 13 C 0.33 7.66 7.40 -154.77 -1.15 6.51 16 14 N -0.65 -11.94 5.34 -12.37 -0.07 -12.01 16 15 C 0.54 9.76 7.74 -12.35 -0.10 9.66 16 16 O -0.45 -9.63 13.68 -15.38 -0.21 -9.84 16 17 C -0.16 -2.24 5.93 -104.47 -0.62 -2.86 16 18 C 0.09 1.08 10.84 -16.97 -0.18 0.89 16 19 N -0.25 -3.38 11.48 30.78 0.35 -3.03 16 20 N -0.22 -2.76 11.46 30.66 0.35 -2.41 16 21 C 0.02 0.16 11.29 -17.20 -0.19 -0.04 16 22 C 0.17 2.11 6.81 -38.20 -0.26 1.85 16 23 O -0.46 -5.49 11.87 -38.94 -0.46 -5.95 16 24 C -0.23 -5.68 8.61 -38.47 -0.33 -6.01 16 25 H 0.28 6.00 8.29 -40.82 -0.34 5.66 16 26 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 27 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 28 H 0.41 6.05 6.86 -40.82 -0.28 5.77 16 29 H 0.18 1.73 6.55 -52.49 -0.34 1.39 16 30 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.41 3.14 9.06 45.56 0.41 3.55 16 32 H 0.13 3.21 6.11 -52.49 -0.32 2.89 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -31.98 291.92 -5.96 -37.93 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -1.35 Total: 11.61 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -4.44 Total: -1.32 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 1.13 Total: -49.18 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.67 Total: -15.79 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.98 -5.96 -37.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149721776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.105 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds