Wall clock time and date at job start Tue Mar 31 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86804 * 119.99771 * 2 1 4 4 H 1.48500 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46611 * 299.99404 * 3 2 1 6 6 H 1.48496 * 109.47214 * 59.99443 * 3 2 1 7 7 C 1.40029 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00171 * 189.85332 * 7 2 1 9 9 C 1.41541 * 120.00033 * 9.85101 * 7 2 1 10 10 C 1.41178 * 120.99930 * 206.24516 * 9 7 2 11 11 C 1.37585 * 119.02174 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11473 * 359.97438 * 11 10 9 13 13 C 1.32483 * 122.22468 * 0.02562 * 12 11 10 14 14 N 1.39380 * 119.57893 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00360 * 354.67528 * 14 13 12 16 16 O 1.21549 * 120.00017 * 354.88635 * 15 14 13 17 17 C 1.47803 * 120.00477 * 174.89053 * 15 14 13 18 18 C 1.39764 * 121.19773 * 359.71359 * 17 15 14 19 19 N 1.31866 * 119.71005 * 179.76135 * 18 17 15 20 20 N 1.28221 * 122.54698 * 0.54188 * 19 18 17 21 21 C 1.31639 * 122.64262 * 359.71834 * 20 19 18 22 22 C 1.39406 * 119.85816 * 0.02562 * 21 20 19 23 23 O 1.35517 * 121.17852 * 179.97438 * 22 21 20 24 24 C 1.38619 * 120.84003 * 359.97438 * 13 12 11 25 25 H 0.97000 * 120.00316 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.48971 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.44497 * 180.02562 * 11 10 9 28 28 H 0.97004 * 119.99924 * 174.66671 * 14 13 12 29 29 H 1.07999 * 120.15008 * 0.02562 * 18 17 15 30 30 H 1.08001 * 120.07266 * 179.97438 * 21 20 19 31 31 H 0.96698 * 113.99806 * 270.02658 * 23 22 21 32 32 H 1.08001 * 120.60570 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8826 2.3963 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0757 -1.2194 0.1606 9 6 1.3157 -2.4295 -0.2086 10 6 1.8140 -3.6468 0.3043 11 6 1.1086 -4.8058 0.0763 12 7 -0.0198 -4.7942 -0.6102 13 6 -0.5298 -3.6794 -1.1124 14 7 -1.7243 -3.7309 -1.8287 15 6 -2.2972 -4.9204 -2.0991 16 8 -1.7270 -5.9515 -1.8005 17 6 -3.6189 -4.9713 -2.7588 18 6 -4.2994 -3.8014 -3.1077 19 7 -5.4750 -3.8811 -3.6996 20 7 -6.0386 -5.0015 -3.9662 21 6 -5.4869 -6.1608 -3.6757 22 6 -4.2405 -6.1994 -3.0524 23 8 -3.6481 -7.3778 -2.7408 24 6 0.1096 -2.4623 -0.9346 25 1 -0.4850 0.8400 -0.0004 26 1 2.7354 -3.6679 0.8673 27 1 1.4833 -5.7408 0.4659 28 1 -2.1434 -2.9105 -2.1326 29 1 -3.8624 -2.8365 -2.8974 30 1 -5.9990 -7.0800 -3.9188 31 1 -3.8714 -7.7094 -1.8603 32 1 -0.3097 -1.5557 -1.3453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149721776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:26 Heat of formation + Delta-G solvation = 5.679436 kcal Electronic energy + Delta-G solvation = -21220.776937 eV Core-core repulsion = 17760.835436 eV Total energy + Delta-G solvation = -3459.941501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.53709 -41.11251 -39.60271 -38.77704 -36.18592 -35.65905 -34.04754 -32.84417 -32.43917 -30.45765 -27.94261 -26.84297 -25.43239 -23.92253 -23.50172 -21.76676 -20.08689 -19.66848 -19.26377 -18.94233 -17.53806 -17.18906 -16.99764 -16.50883 -16.24780 -16.06329 -15.85224 -15.57765 -15.29296 -15.06461 -14.60367 -14.36877 -14.22667 -13.32422 -13.18476 -12.87972 -12.72330 -12.17897 -11.87529 -11.74749 -11.65939 -11.59513 -11.36705 -11.21992 -10.94708 -10.78336 -9.95262 -9.69024 -8.93842 -8.60632 -6.59193 -0.94913 -0.37794 0.73915 0.97948 1.42741 1.52979 1.56614 1.75791 1.80591 2.20658 2.36082 2.55446 2.81604 2.95339 3.09274 3.31462 3.51465 3.71687 4.07472 4.18718 4.35637 4.47491 4.71669 4.77002 4.88155 4.90082 5.05475 5.23508 5.44262 5.55978 5.89743 6.07088 6.36928 6.42193 6.51466 6.76458 6.82833 7.05849 7.43286 7.74626 8.27867 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.004181 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.659397 B = 6695.986872 C = 7822.419125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.482 4.482 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.293 4.293 11 C 0.114 3.886 12 N -0.576 5.576 13 C 0.331 3.669 14 N -0.642 5.642 15 C 0.548 3.452 16 O -0.490 6.490 17 C -0.179 4.179 18 C 0.098 3.902 19 N -0.271 5.271 20 N -0.230 5.230 21 C 0.033 3.967 22 C 0.184 3.816 23 O -0.473 6.473 24 C -0.253 4.253 25 H 0.292 0.708 26 H 0.117 0.883 27 H 0.153 0.847 28 H 0.422 0.578 29 H 0.198 0.802 30 H 0.223 0.777 31 H 0.426 0.574 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 -4.557 -4.230 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.191 1.191 7 C -0.513 4.513 8 H 0.101 0.899 9 C 0.105 3.895 10 C -0.317 4.317 11 C -0.040 4.040 12 N -0.296 5.296 13 C 0.106 3.894 14 N -0.290 5.290 15 C 0.333 3.667 16 O -0.361 6.361 17 C -0.194 4.194 18 C -0.067 4.067 19 N -0.112 5.112 20 N -0.071 5.071 21 C -0.134 4.134 22 C 0.125 3.875 23 O -0.287 6.287 24 C -0.278 4.278 25 H 0.103 0.897 26 H 0.135 0.865 27 H 0.170 0.830 28 H 0.261 0.739 29 H 0.215 0.785 30 H 0.240 0.760 31 H 0.290 0.710 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.299 -5.164 -5.337 12.697 hybrid contribution 1.836 1.039 1.294 2.475 sum -8.463 -4.125 -4.043 10.246 Atomic orbital electron populations 1.69753 1.08818 1.30831 1.34782 1.26769 0.95690 1.04414 0.90883 0.85061 0.79266 0.75842 0.79001 1.18301 1.18693 1.19140 1.19910 0.96232 0.90926 1.44226 0.89885 1.18015 0.91151 0.93338 0.87035 1.22139 1.04891 0.94254 1.10406 1.22212 0.90108 0.97608 0.94055 1.67277 1.15852 1.28381 1.18043 1.18314 0.87224 0.90610 0.93288 1.43210 1.22234 1.09733 1.53873 1.18207 0.84951 0.83924 0.79612 1.90874 1.62909 1.33163 1.49137 1.21766 0.96960 0.96347 1.04322 1.24856 0.91434 0.99309 0.91128 1.72893 1.08791 1.18836 1.10697 1.72701 1.27732 0.95080 1.11615 1.25361 0.91563 1.00501 0.96000 1.19859 0.90120 0.85646 0.91831 1.84634 1.71005 1.32389 1.40684 1.21676 1.01314 0.95816 1.08993 0.89671 0.86509 0.83013 0.73872 0.78505 0.76039 0.70989 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.44 10.70 21.84 0.23 -38.20 16 2 C 0.04 1.80 5.31 85.29 0.45 2.25 16 3 Si 0.99 34.99 29.57 68.60 2.03 37.02 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 5 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 6 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 7 C -0.48 -24.22 9.14 23.52 0.21 -24.01 16 8 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 9 C 0.11 5.83 5.60 -21.11 -0.12 5.71 16 10 C -0.29 -14.01 9.90 22.84 0.23 -13.79 16 11 C 0.11 5.25 11.15 84.50 0.94 6.19 16 12 N -0.58 -28.20 7.88 -193.58 -1.53 -29.73 16 13 C 0.33 15.47 7.40 132.78 0.98 16.45 16 14 N -0.64 -23.72 5.34 -311.32 -1.66 -25.38 16 15 C 0.55 19.48 7.74 86.77 0.67 20.15 16 16 O -0.49 -20.90 13.68 15.92 0.22 -20.68 16 17 C -0.18 -4.78 5.93 -19.77 -0.12 -4.90 16 18 C 0.10 2.28 10.84 85.06 0.92 3.20 16 19 N -0.27 -6.83 11.48 -56.54 -0.65 -7.47 16 20 N -0.23 -5.36 11.46 -56.90 -0.65 -6.01 16 21 C 0.03 0.59 11.29 85.00 0.96 1.55 16 22 C 0.18 4.14 6.81 23.16 0.16 4.30 16 23 O -0.47 -10.36 11.87 -68.41 -0.81 -11.18 16 24 C -0.25 -12.48 8.61 22.99 0.20 -12.28 16 25 H 0.29 12.26 8.29 -92.71 -0.77 11.49 16 26 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 27 H 0.15 5.95 8.06 -2.91 -0.02 5.93 16 28 H 0.42 12.45 6.86 -92.70 -0.64 11.81 16 29 H 0.20 3.58 6.55 -2.91 -0.02 3.56 16 30 H 0.22 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.43 5.80 9.06 -74.06 -0.67 5.13 16 32 H 0.13 6.42 6.11 -2.91 -0.02 6.40 16 Total: -1.00 -68.96 291.92 2.59 -66.38 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.09 Total: 30.44 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.49 Total: 4.83 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.26 Total: -106.80 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.59 Total: -31.86 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -68.96 2.59 -66.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149721776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.055 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds