Wall clock time and date at job start Tue Mar 31 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00171 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00217 * 3 2 1 7 7 C 1.38817 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36917 * 119.99841 * 0.27493 * 7 2 1 10 10 C 1.38877 * 120.00258 * 179.72350 * 9 7 2 11 11 C 1.38898 * 119.66483 * 359.97438 * 10 9 7 12 12 C 1.39223 * 118.98841 * 180.02562 * 11 10 9 13 13 S 1.76197 * 120.83315 * 180.02562 * 12 11 10 14 14 C 1.81393 * 103.00075 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47052 * 179.97438 * 14 13 12 16 16 C 1.38237 * 120.00135 * 269.72701 * 15 14 13 17 17 C 1.38232 * 119.99758 * 179.76553 * 16 15 14 18 18 C 1.38238 * 120.00473 * 0.51052 * 17 16 15 19 19 C 1.38236 * 119.99393 * 359.74058 * 18 17 16 20 20 C 1.38233 * 119.99880 * 90.00363 * 15 14 13 21 21 C 1.39756 * 118.33860 * 0.02562 * 12 11 10 22 22 C 1.37795 * 119.23826 * 0.02562 * 21 12 11 23 23 N 1.32032 * 120.95380 * 359.72405 * 22 21 12 24 24 H 0.96996 * 120.00423 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99668 * 359.72565 * 9 7 2 26 26 H 1.08003 * 120.51236 * 359.97438 * 11 10 9 27 27 H 1.08997 * 109.47538 * 299.99953 * 14 13 12 28 28 H 1.09003 * 109.47410 * 60.00221 * 14 13 12 29 29 H 1.07999 * 119.99768 * 359.97438 * 16 15 14 30 30 H 1.08001 * 119.99990 * 180.22916 * 17 16 15 31 31 H 1.07992 * 120.00603 * 179.72452 * 18 17 16 32 32 H 1.08006 * 119.99613 * 179.97438 * 19 18 17 33 33 H 1.08005 * 120.00492 * 359.97438 * 20 15 14 34 34 H 1.07994 * 120.37792 * 180.02562 * 21 12 11 35 35 H 1.08003 * 119.52516 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8909 2.3964 1.2125 7 6 2.0098 -1.2022 -0.0005 8 1 3.0898 -1.2021 -0.0010 9 7 1.3252 -2.3879 -0.0068 10 6 2.0196 -3.5906 -0.0131 11 6 3.4086 -3.5825 -0.0136 12 6 4.0904 -4.7963 -0.0206 13 16 5.8517 -4.8428 -0.0209 14 6 6.2131 -6.6203 -0.0302 15 6 7.7055 -6.8295 -0.0320 16 6 8.3887 -6.9249 -1.2300 17 6 9.7583 -7.1120 -1.2315 18 6 10.4434 -7.2142 -0.0352 19 6 9.7595 -7.1240 1.1627 20 6 8.3905 -6.9317 1.1643 21 6 3.3428 -5.9771 -0.0273 22 6 1.9669 -5.9026 -0.0274 23 7 1.3500 -4.7353 -0.0158 24 1 -0.4850 0.8400 0.0004 25 1 0.3552 -2.3879 -0.0068 26 1 3.9515 -2.6488 -0.0096 27 1 5.7820 -7.0834 0.8573 28 1 5.7819 -7.0741 -0.9226 29 1 7.8528 -6.8500 -2.1646 30 1 10.2926 -7.1828 -2.1675 31 1 11.5128 -7.3648 -0.0364 32 1 10.2946 -7.2042 2.0974 33 1 7.8563 -6.8612 2.1003 34 1 3.8378 -6.9369 -0.0324 35 1 1.3846 -6.8122 -0.0330 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:31 Heat of formation + Delta-G solvation = 59.199393 kcal Electronic energy + Delta-G solvation = -18281.317860 eV Core-core repulsion = 15369.990373 eV Total energy + Delta-G solvation = -2911.327487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.35330 -38.96864 -35.33137 -33.05358 -32.07787 -31.36128 -31.06712 -28.61144 -27.13031 -24.96996 -22.91340 -22.74725 -21.59175 -21.35295 -17.96003 -17.61288 -16.82042 -15.70779 -15.50015 -15.42394 -15.37713 -14.76680 -14.45663 -13.76382 -13.64232 -13.47254 -13.39881 -13.14587 -12.94400 -12.87375 -12.21887 -11.85089 -11.41367 -11.27556 -11.20990 -11.19263 -10.57261 -10.44477 -10.38032 -10.13190 -9.71444 -9.09069 -8.83734 -8.82911 -8.38814 -7.15257 -7.08383 -6.68171 -3.89595 0.92247 1.23750 2.04702 2.15710 2.30979 2.77086 3.10530 3.12821 3.17552 3.69632 3.94628 4.49766 4.61579 4.63093 4.82675 4.87473 4.95255 5.06023 5.18758 5.31605 5.45817 5.46785 5.54279 5.79820 5.87044 5.92693 6.24516 6.27593 6.32921 6.33857 6.41407 6.61864 6.80559 6.87147 6.93315 7.23037 7.44120 7.79804 8.54217 8.89305 9.23967 9.62114 10.47974 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.003436 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.634048 B = 8146.916145 C = 9127.062186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.526 5.526 10 C 0.373 3.627 11 C -0.233 4.233 12 C 0.000 4.000 13 S -0.115 6.115 14 C -0.067 4.067 15 C -0.069 4.069 16 C -0.102 4.102 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.102 4.102 21 C -0.321 4.321 22 C 0.177 3.823 23 N -0.579 5.579 24 H 0.277 0.723 25 H 0.405 0.595 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.007 -12.647 -0.082 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.132 5.132 10 C 0.128 3.872 11 C -0.267 4.267 12 C -0.119 4.119 13 S 0.130 5.870 14 C -0.214 4.214 15 C -0.070 4.070 16 C -0.122 4.122 17 C -0.139 4.139 18 C -0.138 4.138 19 C -0.139 4.139 20 C -0.122 4.122 21 C -0.353 4.353 22 C 0.011 3.989 23 N -0.301 5.301 24 H 0.087 0.913 25 H 0.241 0.759 26 H 0.145 0.855 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.127 0.873 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.769 -11.157 -0.070 19.316 hybrid contribution -0.151 -0.221 -0.010 0.268 sum 15.618 -11.377 -0.080 19.322 Atomic orbital electron populations 1.69705 1.06105 1.28836 1.47092 1.25374 0.95779 1.00101 0.96738 0.85703 0.79546 0.80465 0.78159 1.18912 1.20313 1.20317 1.19830 0.93153 0.82129 1.48230 0.87654 1.40852 1.08790 1.01103 1.62405 1.18093 0.87904 0.86161 0.95055 1.20657 0.93395 0.96431 1.16180 1.21568 0.94850 0.96349 0.99150 1.85547 1.01504 1.06983 1.93016 1.22493 0.95202 0.97258 1.06458 1.19293 0.93385 1.00505 0.93856 1.21098 0.94466 0.99020 0.97608 1.21135 0.94221 1.00350 0.98205 1.21180 0.99856 1.00155 0.92659 1.21137 0.94238 1.00352 0.98188 1.21099 0.94463 0.99001 0.97627 1.21069 0.95531 0.95887 1.22852 1.21844 0.91067 0.94209 0.91755 1.67131 1.40385 0.97388 1.25181 0.91253 0.75905 0.85504 0.88603 0.88607 0.85691 0.85930 0.86127 0.85930 0.85689 0.87283 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.59 13.05 55.49 0.72 -22.86 16 2 C 0.03 0.64 5.50 -17.45 -0.10 0.55 16 3 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.30 -7.88 9.54 -15.07 -0.14 -8.03 16 8 H 0.11 2.64 5.65 -52.49 -0.30 2.34 16 9 N -0.53 -13.63 5.44 -11.20 -0.06 -13.69 16 10 C 0.37 9.07 7.61 -155.05 -1.18 7.89 16 11 C -0.23 -5.27 9.12 -38.97 -0.36 -5.63 16 12 C 0.00 0.01 6.16 -38.65 -0.24 -0.23 16 13 S -0.11 -1.87 21.94 -107.50 -2.36 -4.23 16 14 C -0.07 -0.83 4.50 36.01 0.16 -0.66 16 15 C -0.07 -0.79 5.14 -104.62 -0.54 -1.33 16 16 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 17 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 18 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 19 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 20 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 21 C -0.32 -5.83 9.43 -39.18 -0.37 -6.20 16 22 C 0.18 3.39 11.16 -17.63 -0.20 3.19 16 23 N -0.58 -13.25 10.39 -12.53 -0.13 -13.38 16 24 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.40 10.81 8.01 -40.82 -0.33 10.49 16 26 H 0.13 2.91 5.93 -52.48 -0.31 2.60 16 27 H 0.10 1.12 7.74 -51.93 -0.40 0.72 16 28 H 0.10 1.12 7.73 -51.92 -0.40 0.72 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.11 1.64 6.07 -52.49 -0.32 1.32 16 35 H 0.14 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -28.41 317.20 -10.71 -39.13 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -3.73 Total: 13.38 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -4.92 Total: -17.85 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.53 Total: -49.93 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.36 Total: -4.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.41 -10.71 -39.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.325 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds