Wall clock time and date at job start Tue Mar 31 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00171 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00217 * 3 2 1 7 7 C 1.38817 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36917 * 119.99841 * 0.27493 * 7 2 1 10 10 C 1.38877 * 120.00258 * 179.72350 * 9 7 2 11 11 C 1.38898 * 119.66483 * 359.97438 * 10 9 7 12 12 C 1.39223 * 118.98841 * 180.02562 * 11 10 9 13 13 S 1.76197 * 120.83315 * 180.02562 * 12 11 10 14 14 C 1.81393 * 103.00075 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47052 * 179.97438 * 14 13 12 16 16 C 1.38237 * 120.00135 * 269.72701 * 15 14 13 17 17 C 1.38232 * 119.99758 * 179.76553 * 16 15 14 18 18 C 1.38238 * 120.00473 * 0.51052 * 17 16 15 19 19 C 1.38236 * 119.99393 * 359.74058 * 18 17 16 20 20 C 1.38233 * 119.99880 * 90.00363 * 15 14 13 21 21 C 1.39756 * 118.33860 * 0.02562 * 12 11 10 22 22 C 1.37795 * 119.23826 * 0.02562 * 21 12 11 23 23 N 1.32032 * 120.95380 * 359.72405 * 22 21 12 24 24 H 0.96996 * 120.00423 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99668 * 359.72565 * 9 7 2 26 26 H 1.08003 * 120.51236 * 359.97438 * 11 10 9 27 27 H 1.08997 * 109.47538 * 299.99953 * 14 13 12 28 28 H 1.09003 * 109.47410 * 60.00221 * 14 13 12 29 29 H 1.07999 * 119.99768 * 359.97438 * 16 15 14 30 30 H 1.08001 * 119.99990 * 180.22916 * 17 16 15 31 31 H 1.07992 * 120.00603 * 179.72452 * 18 17 16 32 32 H 1.08006 * 119.99613 * 179.97438 * 19 18 17 33 33 H 1.08005 * 120.00492 * 359.97438 * 20 15 14 34 34 H 1.07994 * 120.37792 * 180.02562 * 21 12 11 35 35 H 1.08003 * 119.52516 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8909 2.3964 1.2125 7 6 2.0098 -1.2022 -0.0005 8 1 3.0898 -1.2021 -0.0010 9 7 1.3252 -2.3879 -0.0068 10 6 2.0196 -3.5906 -0.0131 11 6 3.4086 -3.5825 -0.0136 12 6 4.0904 -4.7963 -0.0206 13 16 5.8517 -4.8428 -0.0209 14 6 6.2131 -6.6203 -0.0302 15 6 7.7055 -6.8295 -0.0320 16 6 8.3887 -6.9249 -1.2300 17 6 9.7583 -7.1120 -1.2315 18 6 10.4434 -7.2142 -0.0352 19 6 9.7595 -7.1240 1.1627 20 6 8.3905 -6.9317 1.1643 21 6 3.3428 -5.9771 -0.0273 22 6 1.9669 -5.9026 -0.0274 23 7 1.3500 -4.7353 -0.0158 24 1 -0.4850 0.8400 0.0004 25 1 0.3552 -2.3879 -0.0068 26 1 3.9515 -2.6488 -0.0096 27 1 5.7820 -7.0834 0.8573 28 1 5.7819 -7.0741 -0.9226 29 1 7.8528 -6.8500 -2.1646 30 1 10.2926 -7.1828 -2.1675 31 1 11.5128 -7.3648 -0.0364 32 1 10.2946 -7.2042 2.0974 33 1 7.8563 -6.8612 2.1003 34 1 3.8378 -6.9369 -0.0324 35 1 1.3846 -6.8122 -0.0330 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:30 Heat of formation + Delta-G solvation = 45.248842 kcal Electronic energy + Delta-G solvation = -18281.922801 eV Core-core repulsion = 15369.990373 eV Total energy + Delta-G solvation = -2911.932428 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68426 -40.08542 -37.11765 -34.04430 -33.73232 -33.04488 -31.78029 -30.28186 -28.09168 -26.80225 -24.51024 -23.46977 -23.19079 -22.29097 -19.77867 -19.15089 -17.67546 -17.30089 -16.96141 -16.61577 -16.22523 -16.12476 -15.88513 -15.36987 -15.10819 -14.97294 -14.46530 -14.32738 -13.87342 -13.86159 -13.62480 -13.23554 -13.12485 -12.86484 -12.25395 -12.21601 -12.07664 -12.02989 -11.90554 -11.41234 -11.32687 -10.65789 -10.09501 -9.81739 -9.61679 -8.86922 -8.55066 -8.53018 -5.85649 -0.00522 0.49239 0.52050 0.66043 0.91331 1.39790 1.45140 1.51894 1.54425 2.21663 2.83444 2.95013 3.10751 3.37028 3.63591 3.83297 3.96808 4.16465 4.26081 4.31196 4.37854 4.52023 4.58811 4.64964 4.65687 4.74393 4.96952 5.07158 5.17002 5.18212 5.21568 5.40282 5.56388 5.62962 5.64000 5.66940 6.07963 6.10143 6.66874 7.10081 7.38106 7.79885 8.63841 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.003436 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.634048 B = 8146.916145 C = 9127.062186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.024 4.024 3 Si 1.003 2.997 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.322 4.322 8 H 0.105 0.895 9 N -0.558 5.558 10 C 0.364 3.636 11 C -0.262 4.262 12 C -0.001 4.001 13 S -0.123 6.123 14 C -0.054 4.054 15 C -0.089 4.089 16 C -0.114 4.114 17 C -0.128 4.128 18 C -0.118 4.118 19 C -0.128 4.128 20 C -0.114 4.114 21 C -0.297 4.297 22 C 0.168 3.832 23 N -0.602 5.602 24 H 0.278 0.722 25 H 0.393 0.607 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.151 0.849 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.936 -15.066 -0.102 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.224 4.224 3 Si 0.825 3.175 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.451 4.451 8 H 0.122 0.878 9 N -0.166 5.166 10 C 0.122 3.878 11 C -0.296 4.296 12 C -0.121 4.121 13 S 0.122 5.878 14 C -0.201 4.201 15 C -0.090 4.090 16 C -0.134 4.134 17 C -0.145 4.145 18 C -0.137 4.137 19 C -0.145 4.145 20 C -0.134 4.134 21 C -0.328 4.328 22 C 0.005 3.995 23 N -0.325 5.325 24 H 0.088 0.912 25 H 0.227 0.773 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.169 0.831 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 18.742 -13.639 -0.090 23.179 hybrid contribution -0.778 0.073 -0.006 0.782 sum 17.963 -13.566 -0.096 22.510 Atomic orbital electron populations 1.69810 1.07490 1.29483 1.49505 1.26264 0.96571 1.03057 0.96486 0.84716 0.78427 0.76216 0.78142 1.18241 1.19899 1.19901 1.20035 0.93243 0.82867 1.48987 0.87773 1.40829 1.08062 1.01697 1.65991 1.18447 0.88702 0.86355 0.94326 1.20653 0.92979 0.97390 1.18579 1.21935 0.97360 0.95771 0.97064 1.85687 0.98267 1.11646 1.92206 1.22590 0.96385 0.93618 1.07523 1.19284 0.92765 1.02352 0.94634 1.21298 0.95310 0.99156 0.97591 1.21455 0.93892 0.99696 0.99494 1.21565 1.01244 0.98646 0.92270 1.21457 0.93907 0.99698 0.99476 1.21299 0.95308 0.99145 0.97610 1.21619 0.95291 0.97071 1.18817 1.22664 0.92280 0.94371 0.90208 1.67194 1.41384 0.98094 1.25798 0.91236 0.77302 0.86865 0.87472 0.87469 0.85203 0.83868 0.83609 0.83869 0.85213 0.83124 0.80254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.94 13.05 21.65 0.28 -51.66 16 2 C -0.02 -1.27 5.50 84.87 0.47 -0.80 16 3 Si 1.00 41.84 29.55 68.60 2.03 43.86 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.32 -17.62 9.54 84.04 0.80 -16.82 16 8 H 0.10 5.52 5.65 -2.91 -0.02 5.51 16 9 N -0.56 -30.53 5.44 -189.33 -1.03 -31.56 16 10 C 0.36 18.25 7.61 132.98 1.01 19.26 16 11 C -0.26 -12.12 9.12 22.66 0.21 -11.92 16 12 C 0.00 -0.05 6.16 22.87 0.14 0.09 16 13 S -0.12 -3.81 21.94 -56.49 -1.24 -5.05 16 14 C -0.05 -1.17 4.50 71.24 0.32 -0.85 16 15 C -0.09 -1.79 5.14 -19.87 -0.10 -1.89 16 16 C -0.11 -2.10 9.70 22.27 0.22 -1.89 16 17 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 18 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 19 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 20 C -0.11 -2.11 9.70 22.27 0.22 -1.89 16 21 C -0.30 -9.83 9.43 22.53 0.21 -9.62 16 22 C 0.17 6.04 11.16 84.56 0.94 6.98 16 23 N -0.60 -27.59 10.39 -193.54 -2.01 -29.60 16 24 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.39 22.44 8.01 -92.71 -0.74 21.70 16 26 H 0.11 5.45 5.93 -2.91 -0.02 5.43 16 27 H 0.11 2.09 7.74 -2.39 -0.02 2.07 16 28 H 0.11 2.09 7.73 -2.39 -0.02 2.07 16 29 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 32 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.15 3.74 6.07 -2.91 -0.02 3.73 16 35 H 0.18 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -64.55 317.20 3.51 -61.04 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.38 Total: 37.24 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 5.11 Total: -24.26 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -2.76 Total: -112.83 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -1.24 Total: -5.05 kcal Total: -64.55 3.51 -61.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.284 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds