Wall clock time and date at job start Tue Mar 31 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29333 * 1 3 3 Si 1.86800 * 120.00395 * 2 1 4 4 H 1.48508 * 109.46679 * 269.99449 * 3 2 1 5 5 H 1.48494 * 109.47227 * 29.99261 * 3 2 1 6 6 H 1.48502 * 109.47241 * 149.99987 * 3 2 1 7 7 C 1.46785 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99559 * 0.02562 * 7 2 1 9 9 N 1.32763 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.38914 * 119.99693 * 180.27798 * 9 7 2 11 11 C 1.39647 * 120.05000 * 359.71935 * 10 9 7 12 12 C 1.38357 * 118.01147 * 180.02562 * 11 10 9 13 13 C 1.39874 * 117.97314 * 359.97438 * 12 11 10 14 14 C 1.48275 * 120.09541 * 179.97438 * 13 12 11 15 15 C 1.39401 * 120.12764 * 359.72974 * 14 13 12 16 16 C 1.37995 * 119.87090 * 179.76392 * 15 14 13 17 17 C 1.38335 * 120.12884 * 0.50989 * 16 15 14 18 18 N 1.48020 * 119.87436 * 179.76556 * 17 16 15 19 19 O 1.31701 * 119.99577 * 179.97438 * 18 17 16 20 20 O 1.31691 * 119.99939 * 359.97438 * 18 17 16 21 21 C 1.38339 * 120.25593 * 359.74107 * 17 16 15 22 22 C 1.37997 * 120.12465 * 0.02562 * 21 17 16 23 23 N 1.32754 * 119.80553 * 0.02562 * 13 12 11 24 24 N 1.28354 * 122.12227 * 359.70249 * 23 13 12 25 25 H 0.96999 * 119.99753 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99744 * 359.97438 * 9 7 2 27 27 H 1.08000 * 120.99251 * 359.97438 * 11 10 9 28 28 H 1.08003 * 121.01447 * 180.02562 * 12 11 10 29 29 H 1.07999 * 120.06432 * 0.02562 * 15 14 13 30 30 H 1.08005 * 119.94029 * 180.22984 * 16 15 14 31 31 H 1.07996 * 119.93796 * 179.97438 * 21 17 16 32 32 H 1.08003 * 120.06702 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2933 0.0000 0.0000 3 14 2.2274 1.6177 0.0000 4 1 2.4750 2.0462 -1.4002 5 1 1.4249 2.6527 0.6998 6 1 3.5250 1.4400 0.7000 7 6 2.0272 -1.2712 0.0006 8 1 1.4871 -2.2065 0.0006 9 7 3.3549 -1.2713 0.0011 10 6 4.0493 -2.4744 -0.0042 11 6 3.3520 -3.6843 -0.0042 12 6 4.0859 -4.8572 -0.0090 13 6 5.4811 -4.7581 -0.0142 14 6 6.3136 -5.9851 -0.0189 15 6 5.7087 -7.2411 -0.0125 16 6 6.4885 -8.3795 -0.0219 17 6 7.8680 -8.2762 -0.0270 18 7 8.6991 -9.5011 -0.0318 19 8 10.0126 -9.4055 -0.0372 20 8 8.1250 -10.6863 -0.0307 21 6 8.4739 -7.0326 -0.0281 22 6 7.7042 -5.8872 -0.0236 23 7 6.0577 -3.5624 -0.0138 24 7 5.3751 -2.4754 -0.0145 25 1 -0.4850 0.8401 -0.0004 26 1 3.8399 -0.4312 0.0007 27 1 2.2722 -3.7038 0.0004 28 1 3.5964 -5.8199 -0.0096 29 1 4.6319 -7.3229 -0.0045 30 1 6.0210 -9.3532 -0.0207 31 1 9.5512 -6.9579 -0.0317 32 1 8.1782 -4.9167 -0.0249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534832.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:48 Heat of formation + Delta-G solvation = 115.453767 kcal Electronic energy + Delta-G solvation = -20296.277210 eV Core-core repulsion = 16841.095881 eV Total energy + Delta-G solvation = -3455.181328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.31993 -39.57885 -38.00285 -36.64461 -34.21123 -33.54928 -32.97201 -31.68887 -31.08219 -29.52702 -26.65015 -24.92715 -24.20270 -22.74190 -22.30462 -21.17630 -19.34903 -18.55980 -17.84807 -17.45748 -16.70972 -16.44998 -15.75964 -15.42972 -14.81418 -14.58945 -14.40039 -14.06402 -13.80668 -13.56099 -13.24781 -13.03383 -12.68035 -12.23832 -12.17056 -11.41202 -11.39344 -11.27017 -11.12313 -10.91984 -10.80926 -10.52765 -10.49867 -10.05363 -9.69311 -9.30254 -9.13724 -8.78451 -7.79838 -7.56768 -4.23538 -0.60592 0.94425 1.16568 1.39888 1.82353 2.00592 2.55119 2.55712 2.59157 3.24800 3.46605 3.87173 3.99726 4.50388 4.59771 4.63313 4.65235 4.98555 5.10734 5.19935 5.36502 5.53731 5.68755 5.72096 5.83221 5.90988 5.91888 6.11865 6.19364 6.36427 6.49724 6.66434 6.80828 6.86969 6.99847 7.18055 7.40363 8.30193 8.39820 9.44289 9.72235 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.053728 B = 0.002818 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.013712 B = 9932.983312 C =10444.146327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.251 1.251 7 C -0.312 4.312 8 H 0.133 0.867 9 N -0.462 5.462 10 C 0.222 3.778 11 C -0.187 4.187 12 C -0.062 4.062 13 C -0.097 4.097 14 C 0.090 3.910 15 C -0.143 4.143 16 C -0.038 4.038 17 C -0.047 4.047 18 N 0.000 5.000 19 O -0.203 6.203 20 O -0.205 6.205 21 C -0.042 4.042 22 C -0.122 4.122 23 N -0.158 5.158 24 N -0.328 5.328 25 H 0.302 0.698 26 H 0.390 0.610 27 H 0.137 0.863 28 H 0.128 0.872 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 -3.235 -0.007 4.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.165 4.165 3 Si 0.712 3.288 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.175 1.175 7 C -0.447 4.447 8 H 0.151 0.849 9 N -0.057 5.057 10 C -0.022 4.022 11 C -0.218 4.218 12 C -0.088 4.088 13 C -0.240 4.240 14 C 0.086 3.914 15 C -0.163 4.163 16 C -0.058 4.058 17 C -0.136 4.136 18 N 0.468 4.532 19 O -0.390 6.390 20 O -0.391 6.391 21 C -0.061 4.061 22 C -0.142 4.142 23 N -0.013 5.013 24 N -0.194 5.194 25 H 0.115 0.885 26 H 0.226 0.774 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.416 -1.543 -0.006 3.748 hybrid contribution -0.923 -0.120 0.018 0.931 sum 2.493 -1.663 0.012 2.996 Atomic orbital electron populations 1.68570 1.07913 1.31632 1.32042 1.26917 0.95403 0.99689 0.94458 0.86410 0.80878 0.80613 0.80889 1.17782 1.18406 1.17515 1.20818 0.80103 0.96371 1.47381 0.84930 1.39912 1.06227 1.05272 1.54305 1.19349 0.90715 0.86298 1.05854 1.21292 1.00802 0.90950 1.08790 1.21651 0.93274 0.98271 0.95611 1.19896 0.91270 0.92222 1.20605 1.18777 0.92671 0.91507 0.88471 1.21110 1.00650 0.90135 1.04431 1.20864 0.90262 1.00797 0.93859 1.20240 0.90374 0.82545 1.20437 1.50449 1.03149 1.04078 0.95485 1.96236 0.89967 1.95580 1.57211 1.96229 1.75190 1.10413 1.57286 1.20976 1.01872 0.89388 0.93909 1.21265 0.92714 0.98452 1.01817 1.72470 1.30781 0.94544 1.03535 1.72618 1.03964 1.19241 1.23540 0.88467 0.77396 0.84551 0.85427 0.83763 0.83404 0.83390 0.82831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -16.21 13.88 56.00 0.78 -15.43 16 2 C 0.06 1.16 5.70 -15.15 -0.09 1.07 16 3 Si 0.89 14.61 27.86 -169.99 -4.74 9.87 16 4 H -0.25 -4.15 7.11 56.52 0.40 -3.75 16 5 H -0.26 -4.18 7.11 56.52 0.40 -3.78 16 6 H -0.25 -4.03 6.62 56.52 0.37 -3.65 16 7 C -0.31 -6.45 10.30 -13.70 -0.14 -6.59 16 8 H 0.13 2.85 5.84 -52.49 -0.31 2.54 16 9 N -0.46 -9.13 5.17 -9.80 -0.05 -9.18 16 10 C 0.22 4.48 7.69 -154.76 -1.19 3.29 16 11 C -0.19 -3.43 9.39 -39.01 -0.37 -3.79 16 12 C -0.06 -1.00 9.54 -38.93 -0.37 -1.37 16 13 C -0.10 -1.67 6.81 -82.73 -0.56 -2.23 16 14 C 0.09 1.30 5.88 -104.90 -0.62 0.69 16 15 C -0.14 -1.75 9.43 -39.24 -0.37 -2.12 16 16 C -0.04 -0.47 9.56 -39.63 -0.38 -0.85 16 17 C -0.05 -0.66 6.89 -79.87 -0.55 -1.21 16 18 N 0.00 -0.01 4.98 34.00 0.17 0.16 16 19 O -0.20 -3.48 19.14 -31.57 -0.60 -4.09 16 20 O -0.20 -3.48 19.14 -31.56 -0.60 -4.08 16 21 C -0.04 -0.55 9.56 -39.63 -0.38 -0.93 16 22 C -0.12 -1.66 9.58 -39.23 -0.38 -2.04 16 23 N -0.16 -3.08 10.62 33.38 0.35 -2.72 16 24 N -0.33 -6.79 11.53 31.25 0.36 -6.43 16 25 H 0.30 5.62 8.26 -40.82 -0.34 5.29 16 26 H 0.39 7.23 6.06 -40.82 -0.25 6.99 16 27 H 0.14 2.38 6.03 -52.49 -0.32 2.07 16 28 H 0.13 1.60 6.29 -52.48 -0.33 1.27 16 29 H 0.14 1.44 6.24 -52.49 -0.33 1.11 16 30 H 0.15 1.59 7.57 -52.48 -0.40 1.20 16 31 H 0.15 1.72 7.57 -52.49 -0.40 1.32 16 32 H 0.15 2.04 7.56 -52.48 -0.40 1.64 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -24.13 294.89 -7.16 -31.29 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -1.88 Total: 12.24 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -5.39 Total: -16.09 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 1.61 Total: -33.59 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -1.21 Total: -8.17 kcal Atomic # 14 Polarization: 14.61 SS G_CDS: -4.74 Total: 9.87 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -24.13 -7.16 -31.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534832.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.746 kcal (2) G-P(sol) polarization free energy of solvation -24.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds