Wall clock time and date at job start Tue Mar 31 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29333 * 1 3 3 Si 1.86800 * 120.00395 * 2 1 4 4 H 1.48508 * 109.46679 * 269.99449 * 3 2 1 5 5 H 1.48494 * 109.47227 * 29.99261 * 3 2 1 6 6 H 1.48502 * 109.47241 * 149.99987 * 3 2 1 7 7 C 1.46785 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99559 * 0.02562 * 7 2 1 9 9 N 1.32763 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.38914 * 119.99693 * 180.27798 * 9 7 2 11 11 C 1.39647 * 120.05000 * 359.71935 * 10 9 7 12 12 C 1.38357 * 118.01147 * 180.02562 * 11 10 9 13 13 C 1.39874 * 117.97314 * 359.97438 * 12 11 10 14 14 C 1.48275 * 120.09541 * 179.97438 * 13 12 11 15 15 C 1.39401 * 120.12764 * 359.72974 * 14 13 12 16 16 C 1.37995 * 119.87090 * 179.76392 * 15 14 13 17 17 C 1.38335 * 120.12884 * 0.50989 * 16 15 14 18 18 N 1.48020 * 119.87436 * 179.76556 * 17 16 15 19 19 O 1.31701 * 119.99577 * 179.97438 * 18 17 16 20 20 O 1.31691 * 119.99939 * 359.97438 * 18 17 16 21 21 C 1.38339 * 120.25593 * 359.74107 * 17 16 15 22 22 C 1.37997 * 120.12465 * 0.02562 * 21 17 16 23 23 N 1.32754 * 119.80553 * 0.02562 * 13 12 11 24 24 N 1.28354 * 122.12227 * 359.70249 * 23 13 12 25 25 H 0.96999 * 119.99753 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99744 * 359.97438 * 9 7 2 27 27 H 1.08000 * 120.99251 * 359.97438 * 11 10 9 28 28 H 1.08003 * 121.01447 * 180.02562 * 12 11 10 29 29 H 1.07999 * 120.06432 * 0.02562 * 15 14 13 30 30 H 1.08005 * 119.94029 * 180.22984 * 16 15 14 31 31 H 1.07996 * 119.93796 * 179.97438 * 21 17 16 32 32 H 1.08003 * 120.06702 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2933 0.0000 0.0000 3 14 2.2274 1.6177 0.0000 4 1 2.4750 2.0462 -1.4002 5 1 1.4249 2.6527 0.6998 6 1 3.5250 1.4400 0.7000 7 6 2.0272 -1.2712 0.0006 8 1 1.4871 -2.2065 0.0006 9 7 3.3549 -1.2713 0.0011 10 6 4.0493 -2.4744 -0.0042 11 6 3.3520 -3.6843 -0.0042 12 6 4.0859 -4.8572 -0.0090 13 6 5.4811 -4.7581 -0.0142 14 6 6.3136 -5.9851 -0.0189 15 6 5.7087 -7.2411 -0.0125 16 6 6.4885 -8.3795 -0.0219 17 6 7.8680 -8.2762 -0.0270 18 7 8.6991 -9.5011 -0.0318 19 8 10.0126 -9.4055 -0.0372 20 8 8.1250 -10.6863 -0.0307 21 6 8.4739 -7.0326 -0.0281 22 6 7.7042 -5.8872 -0.0236 23 7 6.0577 -3.5624 -0.0138 24 7 5.3751 -2.4754 -0.0145 25 1 -0.4850 0.8401 -0.0004 26 1 3.8399 -0.4312 0.0007 27 1 2.2722 -3.7038 0.0004 28 1 3.5964 -5.8199 -0.0096 29 1 4.6319 -7.3229 -0.0045 30 1 6.0210 -9.3532 -0.0207 31 1 9.5512 -6.9579 -0.0317 32 1 8.1782 -4.9167 -0.0249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534832.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:48 Heat of formation + Delta-G solvation = 103.614379 kcal Electronic energy + Delta-G solvation = -20296.790604 eV Core-core repulsion = 16841.095881 eV Total energy + Delta-G solvation = -3455.694723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.70136 -40.88305 -39.27750 -38.01418 -35.52675 -34.91636 -34.34376 -33.00037 -32.25157 -30.91870 -27.97722 -26.31038 -25.57116 -24.05064 -23.52121 -22.47166 -20.74464 -19.76559 -19.13992 -18.84097 -17.99551 -17.85994 -17.02673 -16.75123 -15.98492 -15.88155 -15.73921 -15.39315 -15.03350 -14.76295 -14.56943 -14.24919 -13.94687 -13.56910 -13.52218 -12.73074 -12.61098 -12.55759 -12.38131 -12.23743 -12.13807 -11.93135 -11.86511 -11.39974 -11.09382 -10.46129 -10.35329 -10.25178 -9.24565 -8.93120 -5.79409 -1.87158 -0.29397 0.08970 0.14981 0.34333 0.68069 1.24282 1.27895 1.31885 1.94768 2.25997 2.47642 2.62312 3.19307 3.28759 3.42209 3.54113 3.76966 3.94896 3.95393 4.18567 4.21670 4.33249 4.40125 4.65201 4.73525 4.81340 4.85169 4.91973 5.14557 5.16632 5.39729 5.49055 5.49981 5.66677 5.72549 6.03434 6.90340 7.02758 8.12726 8.23170 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.053728 B = 0.002818 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.013712 B = 9932.983312 C =10444.146327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.026 3.974 3 Si 0.944 3.056 4 H -0.254 1.254 5 H -0.256 1.256 6 H -0.249 1.249 7 C -0.354 4.354 8 H 0.110 0.890 9 N -0.484 5.484 10 C 0.238 3.762 11 C -0.203 4.203 12 C -0.048 4.048 13 C -0.075 4.075 14 C 0.074 3.926 15 C -0.118 4.118 16 C -0.031 4.031 17 C -0.046 4.046 18 N -0.003 5.003 19 O -0.220 6.220 20 O -0.204 6.204 21 C -0.037 4.037 22 C -0.115 4.115 23 N -0.182 5.182 24 N -0.364 5.364 25 H 0.305 0.695 26 H 0.391 0.609 27 H 0.140 0.860 28 H 0.176 0.824 29 H 0.178 0.822 30 H 0.173 0.827 31 H 0.163 0.837 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -6.448 0.010 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.191 4.191 3 Si 0.763 3.237 4 H -0.178 1.178 5 H -0.180 1.180 6 H -0.173 1.173 7 C -0.486 4.486 8 H 0.128 0.872 9 N -0.085 5.085 10 C -0.007 4.007 11 C -0.236 4.236 12 C -0.074 4.074 13 C -0.223 4.223 14 C 0.070 3.930 15 C -0.138 4.138 16 C -0.050 4.050 17 C -0.134 4.134 18 N 0.465 4.535 19 O -0.405 6.405 20 O -0.393 6.393 21 C -0.056 4.056 22 C -0.135 4.135 23 N -0.032 5.032 24 N -0.227 5.227 25 H 0.117 0.883 26 H 0.227 0.773 27 H 0.158 0.842 28 H 0.193 0.807 29 H 0.196 0.804 30 H 0.190 0.810 31 H 0.180 0.820 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.338 -4.735 0.012 7.136 hybrid contribution -0.902 0.012 0.006 0.902 sum 4.436 -4.723 0.018 6.480 Atomic orbital electron populations 1.68625 1.08999 1.32251 1.36035 1.27439 0.95838 1.01813 0.94016 0.85633 0.79838 0.77513 0.80669 1.17785 1.17969 1.17261 1.20462 0.80448 0.95966 1.51710 0.87240 1.39677 1.05673 1.04965 1.58142 1.19807 0.90946 0.87398 1.02566 1.21568 1.01448 0.91287 1.09302 1.22170 0.92766 0.99566 0.92904 1.20475 0.92306 0.92555 1.16955 1.18861 0.92823 0.91353 0.89940 1.21422 1.02285 0.88629 1.01509 1.21180 0.89353 1.02055 0.92457 1.20636 0.91101 0.82049 1.19638 1.50733 1.03254 1.04549 0.94918 1.96250 0.90486 1.95638 1.58079 1.96230 1.75024 1.11061 1.56973 1.21110 1.02752 0.88749 0.93028 1.21329 0.92607 0.98789 1.00763 1.72431 1.31287 0.95156 1.04293 1.72639 1.04187 1.20023 1.25866 0.88261 0.77336 0.84188 0.80680 0.80433 0.80969 0.81962 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -37.50 13.88 23.26 0.32 -37.17 16 2 C 0.03 1.11 5.70 87.30 0.50 1.60 16 3 Si 0.94 31.85 27.86 68.60 1.91 33.76 16 4 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 5 H -0.26 -8.25 7.11 99.48 0.71 -7.55 16 6 H -0.25 -8.10 6.62 99.48 0.66 -7.44 16 7 C -0.35 -15.69 10.30 86.79 0.89 -14.80 16 8 H 0.11 5.12 5.84 -2.91 -0.02 5.11 16 9 N -0.48 -20.15 5.17 -184.91 -0.96 -21.10 16 10 C 0.24 9.72 7.69 133.16 1.02 10.74 16 11 C -0.20 -7.29 9.39 22.64 0.21 -7.08 16 12 C -0.05 -1.38 9.54 22.69 0.22 -1.16 16 13 C -0.08 -2.32 6.81 42.07 0.29 -2.04 16 14 C 0.07 1.78 5.88 -20.05 -0.12 1.66 16 15 C -0.12 -2.15 9.43 22.49 0.21 -1.93 16 16 C -0.03 -0.59 9.56 22.24 0.21 -0.37 16 17 C -0.05 -1.08 6.89 36.42 0.25 -0.82 16 18 N 0.00 -0.08 4.98 -46.35 -0.23 -0.31 16 19 O -0.22 -6.90 19.14 3.51 0.07 -6.83 16 20 O -0.20 -6.12 19.14 3.53 0.07 -6.05 16 21 C -0.04 -0.81 9.56 22.24 0.21 -0.60 16 22 C -0.11 -2.66 9.58 22.49 0.22 -2.45 16 23 N -0.18 -6.76 10.62 -48.31 -0.51 -7.27 16 24 N -0.36 -15.01 11.53 -55.03 -0.63 -15.64 16 25 H 0.30 12.30 8.26 -92.71 -0.77 11.54 16 26 H 0.39 15.30 6.06 -92.71 -0.56 14.74 16 27 H 0.14 4.95 6.03 -2.91 -0.02 4.94 16 28 H 0.18 3.29 6.29 -2.91 -0.02 3.28 16 29 H 0.18 2.13 6.24 -2.91 -0.02 2.11 16 30 H 0.17 2.57 7.57 -2.91 -0.02 2.55 16 31 H 0.16 3.15 7.57 -2.91 -0.02 3.12 16 32 H 0.16 3.64 7.56 -2.91 -0.02 3.62 16 Total: -1.00 -54.28 294.89 4.76 -49.52 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.61 Total: 28.34 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.12 Total: -17.24 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.01 Total: -81.50 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.13 Total: -12.88 kcal Atomic # 14 Polarization: 31.85 SS G_CDS: 1.91 Total: 33.76 kcal Total: -54.28 4.76 -49.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534832.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.139 kcal (2) G-P(sol) polarization free energy of solvation -54.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds