Wall clock time and date at job start Tue Mar 31 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29328 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48500 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46906 * 299.99866 * 3 2 1 6 6 H 1.48501 * 109.47081 * 59.99960 * 3 2 1 7 7 C 1.46778 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 180.02562 * 7 2 1 9 9 N 1.32767 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.38911 * 119.99773 * 179.97438 * 9 7 2 11 11 C 1.39642 * 120.05080 * 359.97438 * 10 9 7 12 12 C 1.38369 * 118.01220 * 179.74870 * 11 10 9 13 13 C 1.39872 * 117.97216 * 0.52735 * 12 11 10 14 14 C 1.48265 * 120.09733 * 179.73758 * 13 12 11 15 15 C 1.39430 * 120.12712 * 353.00788 * 14 13 12 16 16 C 1.37973 * 119.87154 * 180.23423 * 15 14 13 17 17 C 1.38367 * 120.12473 * 359.76187 * 16 15 14 18 18 C 1.38304 * 120.25955 * 359.97438 * 17 16 15 19 19 C 1.38018 * 120.12900 * 359.97438 * 18 17 16 20 20 N 1.48017 * 120.06785 * 180.02562 * 19 18 17 21 21 O 1.31693 * 120.00224 * 127.44631 * 20 19 18 22 22 O 1.31703 * 119.99982 * 307.16729 * 20 19 18 23 23 N 1.32758 * 119.80434 * 359.46195 * 13 12 11 24 24 N 1.28351 * 122.12380 * 0.27905 * 23 13 12 25 25 H 0.97003 * 120.00583 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99563 * 0.02562 * 9 7 2 27 27 H 1.07997 * 120.99691 * 359.97438 * 11 10 9 28 28 H 1.07996 * 121.01295 * 180.28455 * 12 11 10 29 29 H 1.07997 * 120.06458 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.94011 * 179.74679 * 16 15 14 31 31 H 1.08001 * 119.86617 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.93914 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2933 0.0000 0.0000 3 14 2.2273 1.6178 0.0000 4 1 3.6873 1.3464 0.0006 5 1 1.8685 2.3964 -1.2125 6 1 1.8685 2.3965 1.2125 7 6 2.0272 -1.2711 0.0006 8 1 3.1072 -1.2711 0.0010 9 7 1.3634 -2.4209 0.0016 10 6 2.0580 -3.6239 0.0016 11 6 3.4544 -3.6251 0.0000 12 6 4.1033 -4.8472 0.0054 13 6 3.3199 -6.0059 0.0008 14 6 3.9661 -7.3403 0.0004 15 6 5.3489 -7.4482 -0.1422 16 6 5.9443 -8.6928 -0.1467 17 6 5.1723 -9.8324 -0.0051 18 6 3.8009 -9.7313 0.1422 19 6 3.1944 -8.4915 0.1493 20 7 1.7266 -8.3849 0.3076 21 8 1.2197 -7.6027 1.2380 22 8 0.9274 -9.0679 -0.4857 23 7 1.9960 -5.9074 0.0023 24 7 1.3960 -4.7727 0.0026 25 1 -0.4851 0.8400 0.0004 26 1 0.3934 -2.4209 0.0016 27 1 4.0114 -2.6998 -0.0017 28 1 5.1817 -4.9046 0.0090 29 1 5.9523 -6.5594 -0.2532 30 1 7.0148 -8.7779 -0.2612 31 1 5.6427 -10.8046 -0.0096 32 1 3.2034 -10.6241 0.2528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:53 Heat of formation + Delta-G solvation = 135.528197 kcal Electronic energy + Delta-G solvation = -21281.197746 eV Core-core repulsion = 17826.886910 eV Total energy + Delta-G solvation = -3454.310836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.16604 -39.15491 -37.48402 -36.40263 -33.59270 -33.21476 -32.68838 -31.58947 -30.91631 -28.85904 -26.16861 -25.23498 -23.68479 -23.18095 -21.61750 -21.17097 -18.81455 -18.07728 -17.36033 -17.20581 -16.56898 -16.32012 -15.43071 -15.10142 -14.87314 -14.22665 -14.14952 -14.09123 -14.02396 -13.17619 -12.90954 -12.60024 -12.27155 -12.03233 -11.97276 -11.54546 -11.24370 -10.94684 -10.79676 -10.58229 -10.39018 -10.22311 -9.83787 -9.64397 -9.37138 -9.29119 -8.90443 -8.41978 -7.53129 -7.49135 -4.06885 0.16701 0.92440 1.27336 1.89389 2.09128 2.19575 2.74632 2.77042 2.80985 3.44437 3.54450 4.15976 4.35071 4.60615 4.69383 4.79816 4.91636 5.12941 5.13632 5.33701 5.47215 5.70923 5.78416 5.93778 5.99872 6.14178 6.20360 6.27200 6.36420 6.40608 6.61960 6.77810 6.93845 7.03411 7.32409 7.51515 7.74344 8.60668 8.81834 9.59120 10.04692 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029051 B = 0.003988 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.577495 B = 7018.936610 C = 7882.373597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.041 3.959 3 Si 0.949 3.051 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.318 4.318 8 H 0.123 0.877 9 N -0.442 5.442 10 C 0.220 3.780 11 C -0.201 4.201 12 C -0.054 4.054 13 C -0.126 4.126 14 C 0.086 3.914 15 C -0.134 4.134 16 C -0.071 4.071 17 C -0.150 4.150 18 C -0.056 4.056 19 C -0.011 4.011 20 N -0.013 5.013 21 O -0.084 6.084 22 O -0.218 6.218 23 N -0.146 5.146 24 N -0.311 5.311 25 H 0.300 0.700 26 H 0.409 0.591 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 -6.345 0.181 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.453 4.453 8 H 0.141 0.859 9 N -0.035 5.035 10 C -0.025 4.025 11 C -0.233 4.233 12 C -0.080 4.080 13 C -0.268 4.268 14 C 0.082 3.918 15 C -0.155 4.155 16 C -0.089 4.089 17 C -0.170 4.170 18 C -0.076 4.076 19 C -0.096 4.096 20 N 0.477 4.523 21 O -0.303 6.303 22 O -0.400 6.400 23 N -0.003 5.003 24 N -0.178 5.178 25 H 0.112 0.888 26 H 0.245 0.755 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.581 -6.588 -0.041 12.464 hybrid contribution 0.852 1.618 0.060 1.830 sum 11.433 -4.970 0.019 12.466 Atomic orbital electron populations 1.68655 1.08306 1.31983 1.33999 1.27278 0.95281 1.01234 0.94124 0.85488 0.80229 0.78108 0.79039 1.17838 1.19360 1.19332 1.21125 0.94048 0.81911 1.48225 0.85947 1.39820 1.09725 1.02053 1.51872 1.19583 0.89857 0.87753 1.05340 1.21156 0.93404 0.98041 1.10723 1.21479 0.99211 0.91703 0.95595 1.19886 0.92523 0.91251 1.23126 1.18116 0.92209 0.89743 0.91757 1.21094 0.92219 0.98588 1.03567 1.21280 1.00333 0.91994 0.95318 1.20905 0.92004 0.99368 1.04748 1.20720 0.95671 0.94816 0.96361 1.20096 0.77866 0.95701 1.15958 1.49969 1.03744 0.98596 1.00006 1.96243 1.80778 1.30187 1.23088 1.96202 1.57742 1.45384 1.40655 1.72821 1.07559 1.17456 1.02441 1.72708 1.29723 0.92946 1.22431 0.88772 0.75481 0.85049 0.85853 0.84167 0.84783 0.84584 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -17.73 13.08 56.00 0.73 -17.00 16 2 C 0.04 0.86 5.69 -15.16 -0.09 0.77 16 3 Si 0.95 15.82 29.65 -169.99 -5.04 10.78 16 4 H -0.26 -4.14 7.11 56.52 0.40 -3.74 16 5 H -0.27 -4.47 7.11 56.52 0.40 -4.06 16 6 H -0.27 -4.46 7.11 56.52 0.40 -4.06 16 7 C -0.32 -7.03 9.80 -13.70 -0.13 -7.17 16 8 H 0.12 2.53 5.72 -52.49 -0.30 2.23 16 9 N -0.44 -10.30 5.31 -9.80 -0.05 -10.35 16 10 C 0.22 5.20 7.70 -154.76 -1.19 4.01 16 11 C -0.20 -4.17 9.39 -39.01 -0.37 -4.54 16 12 C -0.05 -1.01 9.52 -38.92 -0.37 -1.38 16 13 C -0.13 -2.67 6.68 -82.73 -0.55 -3.22 16 14 C 0.09 1.54 5.87 -104.90 -0.62 0.93 16 15 C -0.13 -1.76 9.42 -39.23 -0.37 -2.13 16 16 C -0.07 -0.73 10.03 -39.63 -0.40 -1.13 16 17 C -0.15 -1.59 10.04 -39.51 -0.40 -1.99 16 18 C -0.06 -0.78 9.88 -39.64 -0.39 -1.18 16 19 C -0.01 -0.20 6.36 -79.60 -0.51 -0.70 16 20 N -0.01 -0.29 3.89 34.13 0.13 -0.16 16 21 O -0.08 -2.00 16.70 -31.56 -0.53 -2.52 16 22 O -0.22 -4.89 19.90 -31.57 -0.63 -5.52 16 23 N -0.15 -3.56 6.97 33.38 0.23 -3.33 16 24 N -0.31 -7.88 11.53 31.26 0.36 -7.52 16 25 H 0.30 5.95 8.26 -40.82 -0.34 5.61 16 26 H 0.41 9.79 8.09 -40.82 -0.33 9.46 16 27 H 0.13 2.45 6.03 -52.49 -0.32 2.13 16 28 H 0.12 1.78 6.35 -52.49 -0.33 1.44 16 29 H 0.14 1.52 6.30 -52.49 -0.33 1.19 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 293.68 15.07 4.43 4.43 Total: -1.00 -28.70 293.68 -7.75 -36.45 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -2.01 Total: 12.46 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -5.38 Total: -17.72 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 1.41 Total: -38.36 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -1.16 Total: -8.04 kcal Atomic # 14 Polarization: 15.82 SS G_CDS: -5.04 Total: 10.78 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.70 -7.75 -36.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.983 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds