Wall clock time and date at job start Tue Mar 31 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29328 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48500 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46906 * 299.99866 * 3 2 1 6 6 H 1.48501 * 109.47081 * 59.99960 * 3 2 1 7 7 C 1.46778 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 180.02562 * 7 2 1 9 9 N 1.32767 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.38911 * 119.99773 * 179.97438 * 9 7 2 11 11 C 1.39642 * 120.05080 * 359.97438 * 10 9 7 12 12 C 1.38369 * 118.01220 * 179.74870 * 11 10 9 13 13 C 1.39872 * 117.97216 * 0.52735 * 12 11 10 14 14 C 1.48265 * 120.09733 * 179.73758 * 13 12 11 15 15 C 1.39430 * 120.12712 * 353.00788 * 14 13 12 16 16 C 1.37973 * 119.87154 * 180.23423 * 15 14 13 17 17 C 1.38367 * 120.12473 * 359.76187 * 16 15 14 18 18 C 1.38304 * 120.25955 * 359.97438 * 17 16 15 19 19 C 1.38018 * 120.12900 * 359.97438 * 18 17 16 20 20 N 1.48017 * 120.06785 * 180.02562 * 19 18 17 21 21 O 1.31693 * 120.00224 * 127.44631 * 20 19 18 22 22 O 1.31703 * 119.99982 * 307.16729 * 20 19 18 23 23 N 1.32758 * 119.80434 * 359.46195 * 13 12 11 24 24 N 1.28351 * 122.12380 * 0.27905 * 23 13 12 25 25 H 0.97003 * 120.00583 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99563 * 0.02562 * 9 7 2 27 27 H 1.07997 * 120.99691 * 359.97438 * 11 10 9 28 28 H 1.07996 * 121.01295 * 180.28455 * 12 11 10 29 29 H 1.07997 * 120.06458 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.94011 * 179.74679 * 16 15 14 31 31 H 1.08001 * 119.86617 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.93914 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2933 0.0000 0.0000 3 14 2.2273 1.6178 0.0000 4 1 3.6873 1.3464 0.0006 5 1 1.8685 2.3964 -1.2125 6 1 1.8685 2.3965 1.2125 7 6 2.0272 -1.2711 0.0006 8 1 3.1072 -1.2711 0.0010 9 7 1.3634 -2.4209 0.0016 10 6 2.0580 -3.6239 0.0016 11 6 3.4544 -3.6251 0.0000 12 6 4.1033 -4.8472 0.0054 13 6 3.3199 -6.0059 0.0008 14 6 3.9661 -7.3403 0.0004 15 6 5.3489 -7.4482 -0.1422 16 6 5.9443 -8.6928 -0.1467 17 6 5.1723 -9.8324 -0.0051 18 6 3.8009 -9.7313 0.1422 19 6 3.1944 -8.4915 0.1493 20 7 1.7266 -8.3849 0.3076 21 8 1.2197 -7.6027 1.2380 22 8 0.9274 -9.0679 -0.4857 23 7 1.9960 -5.9074 0.0023 24 7 1.3960 -4.7727 0.0026 25 1 -0.4851 0.8400 0.0004 26 1 0.3934 -2.4209 0.0016 27 1 4.0114 -2.6998 -0.0017 28 1 5.1817 -4.9046 0.0090 29 1 5.9523 -6.5594 -0.2532 30 1 7.0148 -8.7779 -0.2612 31 1 5.6427 -10.8046 -0.0096 32 1 3.2034 -10.6241 0.2528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:53 Heat of formation + Delta-G solvation = 117.983086 kcal Electronic energy + Delta-G solvation = -21281.958559 eV Core-core repulsion = 17826.886910 eV Total energy + Delta-G solvation = -3455.071649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66995 -40.61263 -38.99314 -37.97138 -35.27531 -34.75785 -34.20370 -32.88460 -32.29474 -30.36727 -27.66538 -26.75409 -25.28419 -24.55375 -22.96548 -22.54644 -20.38126 -19.50358 -18.97255 -18.77232 -17.99188 -17.70838 -16.91321 -16.53740 -15.97310 -15.82750 -15.68205 -15.42927 -15.24244 -14.63645 -14.20440 -14.02373 -13.63464 -13.42981 -13.19427 -12.67545 -12.64604 -12.43913 -12.33203 -12.09733 -12.01342 -11.88134 -11.35273 -11.27617 -10.95624 -10.40623 -10.27168 -10.07779 -9.13334 -8.97827 -5.74983 -1.44042 -0.32943 0.04601 0.40135 0.43701 0.76617 1.38699 1.46476 1.55307 2.08246 2.38820 2.66947 2.76261 3.24360 3.31898 3.49045 3.80221 3.95570 4.08428 4.10218 4.19836 4.34619 4.39344 4.47704 4.76613 4.81608 4.92281 4.97242 5.03918 5.15332 5.26174 5.34760 5.46613 5.67664 5.73321 5.78304 6.20396 6.97719 7.23006 8.13795 8.36576 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029051 B = 0.003988 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.577495 B = 7018.936610 C = 7882.373597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.002 3.998 3 Si 1.019 2.981 4 H -0.244 1.244 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.359 4.359 8 H 0.132 0.868 9 N -0.468 5.468 10 C 0.217 3.783 11 C -0.209 4.209 12 C -0.043 4.043 13 C -0.117 4.117 14 C 0.045 3.955 15 C -0.119 4.119 16 C -0.046 4.046 17 C -0.114 4.114 18 C -0.068 4.068 19 C -0.039 4.039 20 N -0.005 5.005 21 O -0.148 6.148 22 O -0.222 6.222 23 N -0.188 5.188 24 N -0.372 5.372 25 H 0.303 0.697 26 H 0.395 0.605 27 H 0.153 0.847 28 H 0.181 0.819 29 H 0.172 0.828 30 H 0.193 0.807 31 H 0.188 0.812 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.742 -9.169 -0.338 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.212 4.212 3 Si 0.838 3.162 4 H -0.167 1.167 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.492 4.492 8 H 0.149 0.851 9 N -0.064 5.064 10 C -0.029 4.029 11 C -0.241 4.241 12 C -0.069 4.069 13 C -0.264 4.264 14 C 0.041 3.959 15 C -0.139 4.139 16 C -0.064 4.064 17 C -0.132 4.132 18 C -0.087 4.087 19 C -0.124 4.124 20 N 0.480 4.520 21 O -0.356 6.356 22 O -0.410 6.410 23 N -0.039 5.039 24 N -0.237 5.237 25 H 0.115 0.885 26 H 0.229 0.771 27 H 0.170 0.830 28 H 0.199 0.801 29 H 0.189 0.811 30 H 0.210 0.790 31 H 0.205 0.795 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 16.753 -9.405 -0.484 19.219 hybrid contribution -0.626 1.653 0.146 1.773 sum 16.128 -7.753 -0.338 17.897 Atomic orbital electron populations 1.68732 1.09850 1.32828 1.36636 1.28237 0.95931 1.03857 0.93171 0.84496 0.79312 0.73718 0.78691 1.16700 1.19270 1.19294 1.21390 0.94492 0.82124 1.51151 0.85112 1.39803 1.08897 1.02378 1.55279 1.20046 0.91407 0.87614 1.03824 1.21521 0.92320 0.99935 1.10345 1.22040 1.01764 0.89838 0.93276 1.20752 0.92050 0.94159 1.19468 1.18410 0.94347 0.87748 0.95353 1.21597 0.89699 1.01547 1.01023 1.22001 1.03069 0.90092 0.91241 1.21652 0.89996 1.02122 0.99475 1.21164 0.97669 0.93314 0.96538 1.20736 0.75356 0.98072 1.18270 1.50562 1.05638 0.97095 0.98738 1.96255 1.81904 1.32537 1.24887 1.96156 1.59388 1.45197 1.40296 1.72758 1.09744 1.17484 1.03905 1.72628 1.31245 0.93789 1.26011 0.88460 0.77134 0.82962 0.80146 0.81089 0.78990 0.79452 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -40.72 13.08 23.26 0.30 -40.42 16 2 C 0.00 0.11 5.69 87.30 0.50 0.61 16 3 Si 1.02 33.45 29.65 68.60 2.03 35.49 16 4 H -0.24 -7.44 7.11 99.48 0.71 -6.73 16 5 H -0.27 -8.61 7.11 99.48 0.71 -7.90 16 6 H -0.27 -8.64 7.11 99.48 0.71 -7.93 16 7 C -0.36 -16.91 9.80 86.79 0.85 -16.06 16 8 H 0.13 5.61 5.72 -2.91 -0.02 5.59 16 9 N -0.47 -23.81 5.31 -184.91 -0.98 -24.79 16 10 C 0.22 10.90 7.70 133.16 1.02 11.92 16 11 C -0.21 -8.66 9.39 22.64 0.21 -8.44 16 12 C -0.04 -1.54 9.52 22.70 0.22 -1.32 16 13 C -0.12 -4.87 6.68 42.07 0.28 -4.59 16 14 C 0.05 1.49 5.87 -20.05 -0.12 1.37 16 15 C -0.12 -2.30 9.42 22.49 0.21 -2.09 16 16 C -0.05 -0.53 10.03 22.24 0.22 -0.30 16 17 C -0.11 -1.47 10.04 22.32 0.22 -1.25 16 18 C -0.07 -1.57 9.88 22.23 0.22 -1.35 16 19 C -0.04 -1.37 6.36 36.60 0.23 -1.14 16 20 N -0.01 -0.23 3.89 -45.93 -0.18 -0.41 16 21 O -0.15 -7.57 16.70 3.53 0.06 -7.51 16 22 O -0.22 -10.26 19.90 3.51 0.07 -10.19 16 23 N -0.19 -9.68 6.97 -48.32 -0.34 -10.01 16 24 N -0.37 -20.36 11.53 -55.03 -0.63 -20.99 16 25 H 0.30 13.02 8.26 -92.71 -0.77 12.25 16 26 H 0.39 21.21 8.09 -92.71 -0.75 20.46 16 27 H 0.15 5.57 6.03 -2.91 -0.02 5.55 16 28 H 0.18 4.15 6.35 -2.91 -0.02 4.13 16 29 H 0.17 2.28 6.30 -2.91 -0.02 2.26 16 30 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 31 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 32 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -74.66 293.68 4.87 -69.78 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.46 Total: 31.71 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 4.08 Total: -22.65 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -1.83 Total: -96.62 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.13 Total: -17.70 kcal Atomic # 14 Polarization: 33.45 SS G_CDS: 2.03 Total: 35.49 kcal Total: -74.66 4.87 -69.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.766 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds